Search of human proteins with 29648305

Search of human proteins with 29648305

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29648305 zinc finger, CCHC domain containing 3 [Homo
sapiens]
         (403 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]      836   0.0  
gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]            54   2e-07
gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]            54   2e-07
gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]            54   2e-07
gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]            54   2e-07
gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]            54   2e-07
gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]              54   2e-07
gi|30795231 brain abundant, membrane attached signal protein 1 [...    47   4e-05
gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]      46   5e-05
gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]            45   9e-05
gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]            45   9e-05
gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]            44   3e-04
gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]            44   3e-04
gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]            43   4e-04
gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens]      43   4e-04
gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens]      43   4e-04
gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens]       43   4e-04
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      43   6e-04
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      43   6e-04
gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]            42   8e-04
gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]    42   8e-04
gi|95147559 ankyrin repeat domain 43 [Homo sapiens]                    42   0.001
gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Ho...    41   0.002
gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Ho...    41   0.002
gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Ho...    41   0.002
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    41   0.002
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    41   0.002
gi|16579828 zinc finger protein 91 [Homo sapiens]                      41   0.002
gi|27894378 chloride intracellular channel 6 [Homo sapiens]            41   0.002
gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]            40   0.003

>gi|29648305 zinc finger, CCHC domain containing 3 [Homo sapiens]
          Length = 403

 Score =  836 bits (2160), Expect = 0.0
 Identities = 403/403 (100%), Positives = 403/403 (100%)

Query: 1   MATGGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPP 60
           MATGGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPP
Sbjct: 1   MATGGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPP 60

Query: 61  RREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEA 120
           RREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEA
Sbjct: 61  RREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEA 120

Query: 121 GRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGRFLVRICFQGDEGACPT 180
           GRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGRFLVRICFQGDEGACPT
Sbjct: 121 GRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGRFLVRICFQGDEGACPT 180

Query: 181 RDFVVGALILRSIGMDPSDIYAVIQIPGSREFDVSFRSAEKLALFLRVYEEKREQEDCWE 240
           RDFVVGALILRSIGMDPSDIYAVIQIPGSREFDVSFRSAEKLALFLRVYEEKREQEDCWE
Sbjct: 181 RDFVVGALILRSIGMDPSDIYAVIQIPGSREFDVSFRSAEKLALFLRVYEEKREQEDCWE 240

Query: 241 NFVVLGRSKSSLKTLFILFRNETVDVEDIVTWLKRHCDVLAVPVKVTDRFGIWTGEYKCE 300
           NFVVLGRSKSSLKTLFILFRNETVDVEDIVTWLKRHCDVLAVPVKVTDRFGIWTGEYKCE
Sbjct: 241 NFVVLGRSKSSLKTLFILFRNETVDVEDIVTWLKRHCDVLAVPVKVTDRFGIWTGEYKCE 300

Query: 301 IELRQGEGGVRHLPGAFFLGAERGYSWYKGQPKTCFKCGSRTHMSGSCTQDRCFRCGEEG 360
           IELRQGEGGVRHLPGAFFLGAERGYSWYKGQPKTCFKCGSRTHMSGSCTQDRCFRCGEEG
Sbjct: 301 IELRQGEGGVRHLPGAFFLGAERGYSWYKGQPKTCFKCGSRTHMSGSCTQDRCFRCGEEG 360

Query: 361 HLSPYCRKGIVCNLCGKRGHAFAQCPKAVHNSVAAQLTGVAGH 403
           HLSPYCRKGIVCNLCGKRGHAFAQCPKAVHNSVAAQLTGVAGH
Sbjct: 361 HLSPYCRKGIVCNLCGKRGHAFAQCPKAVHNSVAAQLTGVAGH 403


>gi|187608750 zinc finger protein 9 isoform 6 [Homo sapiens]
          Length = 170

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 335 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 385
           C+ CG   H+   CT+ +C+RCGE GH++  C K   + C  CG+ GH   +C
Sbjct: 112 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 164



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 335 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 391
           C+ CG   H++  C    + +C+ CGE GH+   C K + C  CG+ GH    C K   +
Sbjct: 91  CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 147

Query: 392 SVAAQLTGVAGH 403
            V     G +GH
Sbjct: 148 EVNCYRCGESGH 159



 Score = 49.3 bits (116), Expect = 6e-06
 Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 8/74 (10%)

Query: 323 RGYSWYKGQ-PKTCFKCGSRTHMSGSCT--QDRCFRCGEEGHLSPYCR-----KGIVCNL 374
           RG+ +     P  C++CG   H++  C   +D C+ CG  GH++  C+     +   C  
Sbjct: 34  RGFQFVSSSLPDICYRCGESGHLAKDCDLQEDACYNCGRGGHIAKDCKEPKREREQCCYN 93

Query: 375 CGKRGHAFAQCPKA 388
           CGK GH    C  A
Sbjct: 94  CGKPGHLARDCDHA 107



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 24/75 (32%)

Query: 335 CFKCGSRTHMSGSCTQ-----------------------DRCFRCGEEGHLSPYC-RKGI 370
           CFKCG   H +  C                         D C+RCGE GHL+  C  +  
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65

Query: 371 VCNLCGKRGHAFAQC 385
            C  CG+ GH    C
Sbjct: 66  ACYNCGRGGHIAKDC 80


>gi|187608744 zinc finger protein 9 isoform 5 [Homo sapiens]
          Length = 171

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 335 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 385
           C+ CG   H+   CT+ +C+RCGE GH++  C K   + C  CG+ GH   +C
Sbjct: 113 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 165



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 335 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 391
           C+ CG   H++  C    + +C+ CGE GH+   C K + C  CG+ GH    C K   +
Sbjct: 92  CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 148

Query: 392 SVAAQLTGVAGH 403
            V     G +GH
Sbjct: 149 EVNCYRCGESGH 160



 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 9/75 (12%)

Query: 323 RGYSWYKGQ-PKTCFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCR-----KGIVCN 373
           RG+ +     P  C++CG   H++  C     + C+ CG  GH++  C+     +   C 
Sbjct: 34  RGFQFVSSSLPDICYRCGESGHLAKDCDLQEDEACYNCGRGGHIAKDCKEPKREREQCCY 93

Query: 374 LCGKRGHAFAQCPKA 388
            CGK GH    C  A
Sbjct: 94  NCGKPGHLARDCDHA 108



 Score = 42.0 bits (97), Expect = 0.001
 Identities = 23/76 (30%), Positives = 29/76 (38%), Gaps = 25/76 (32%)

Query: 335 CFKCGSRTHMSGSCTQ-----------------------DRCFRCGEEGHLSPYC--RKG 369
           CFKCG   H +  C                         D C+RCGE GHL+  C  ++ 
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65

Query: 370 IVCNLCGKRGHAFAQC 385
             C  CG+ GH    C
Sbjct: 66  EACYNCGRGGHIAKDC 81


>gi|187608738 zinc finger protein 9 isoform 4 [Homo sapiens]
          Length = 172

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 335 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 385
           C+ CG   H+   CT+ +C+RCGE GH++  C K   + C  CG+ GH   +C
Sbjct: 114 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 166



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 335 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 391
           C+ CG   H++  C    + +C+ CGE GH+   C K + C  CG+ GH    C K   +
Sbjct: 93  CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 149

Query: 392 SVAAQLTGVAGH 403
            V     G +GH
Sbjct: 150 EVNCYRCGESGH 161



 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 10/76 (13%)

Query: 323 RGYSWYKGQ-PKTCFKCGSRTHMSGSCTQ----DRCFRCGEEGHLSPYCR-----KGIVC 372
           RG+ +     P  C++CG   H++  C      + C+ CG  GH++  C+     +   C
Sbjct: 34  RGFQFVSSSLPDICYRCGESGHLAKDCDLQEDVEACYNCGRGGHIAKDCKEPKREREQCC 93

Query: 373 NLCGKRGHAFAQCPKA 388
             CGK GH    C  A
Sbjct: 94  YNCGKPGHLARDCDHA 109



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 26/77 (33%)

Query: 335 CFKCGSRTHMSGSCTQ-----------------------DRCFRCGEEGHLSPYC---RK 368
           CFKCG   H +  C                         D C+RCGE GHL+  C     
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGFQFVSSSLPDICYRCGESGHLAKDCDLQED 65

Query: 369 GIVCNLCGKRGHAFAQC 385
              C  CG+ GH    C
Sbjct: 66  VEACYNCGRGGHIAKDC 82


>gi|187608732 zinc finger protein 9 isoform 2 [Homo sapiens]
          Length = 178

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 335 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 385
           C+ CG   H+   CT+ +C+RCGE GH++  C K   + C  CG+ GH   +C
Sbjct: 120 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 172



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 335 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 391
           C+ CG   H++  C    + +C+ CGE GH+   C K + C  CG+ GH    C K   +
Sbjct: 99  CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 155

Query: 392 SVAAQLTGVAGH 403
            V     G +GH
Sbjct: 156 EVNCYRCGESGH 167



 Score = 48.9 bits (115), Expect = 8e-06
 Identities = 31/109 (28%), Positives = 46/109 (42%), Gaps = 13/109 (11%)

Query: 289 RFGIWTGEYKCEIELRQGEGGVRHLPGAFFLGAERGYSWYKGQ-PKTCFKCGSRTHMSGS 347
           R G W  E  C     +G G      G F   ++RG+ +     P  C++CG   H++  
Sbjct: 11  RSGHWARE--CPTGGGRGRGMRSRGRGGFT--SDRGFQFVSSSLPDICYRCGESGHLAKD 66

Query: 348 CT---QDRCFRCGEEGHLSPYCR-----KGIVCNLCGKRGHAFAQCPKA 388
           C     + C+ CG  GH++  C+     +   C  CGK GH    C  A
Sbjct: 67  CDLQEDEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 115



 Score = 40.8 bits (94), Expect = 0.002
 Identities = 25/83 (30%), Positives = 31/83 (37%), Gaps = 32/83 (38%)

Query: 335 CFKCGSRTHMSGSC------------------TQDR------------CFRCGEEGHLSP 364
           CFKCG   H +  C                  T DR            C+RCGE GHL+ 
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65

Query: 365 YC--RKGIVCNLCGKRGHAFAQC 385
            C  ++   C  CG+ GH    C
Sbjct: 66  DCDLQEDEACYNCGRGGHIAKDC 88


>gi|187608726 zinc finger protein 9 isoform 1 [Homo sapiens]
          Length = 179

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 335 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 385
           C+ CG   H+   CT+ +C+RCGE GH++  C K   + C  CG+ GH   +C
Sbjct: 121 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 173



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 335 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 391
           C+ CG   H++  C    + +C+ CGE GH+   C K + C  CG+ GH    C K   +
Sbjct: 100 CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 156

Query: 392 SVAAQLTGVAGH 403
            V     G +GH
Sbjct: 157 EVNCYRCGESGH 168



 Score = 47.8 bits (112), Expect = 2e-05
 Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 14/110 (12%)

Query: 289 RFGIWTGEYKCEIELRQGEGGVRHLPGAFFLGAERGYSWYKGQ-PKTCFKCGSRTHMSGS 347
           R G W  E  C     +G G      G F   ++RG+ +     P  C++CG   H++  
Sbjct: 11  RSGHWARE--CPTGGGRGRGMRSRGRGGFT--SDRGFQFVSSSLPDICYRCGESGHLAKD 66

Query: 348 CTQ----DRCFRCGEEGHLSPYCR-----KGIVCNLCGKRGHAFAQCPKA 388
           C      + C+ CG  GH++  C+     +   C  CGK GH    C  A
Sbjct: 67  CDLQEDVEACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 116



 Score = 38.5 bits (88), Expect = 0.011
 Identities = 25/84 (29%), Positives = 29/84 (34%), Gaps = 33/84 (39%)

Query: 335 CFKCGSRTHMSGSC------------------TQDR------------CFRCGEEGHLSP 364
           CFKCG   H +  C                  T DR            C+RCGE GHL+ 
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65

Query: 365 YC---RKGIVCNLCGKRGHAFAQC 385
            C        C  CG+ GH    C
Sbjct: 66  DCDLQEDVEACYNCGRGGHIAKDC 89


>gi|4827071 zinc finger protein 9 isoform 3 [Homo sapiens]
          Length = 177

 Score = 54.3 bits (129), Expect = 2e-07
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 335 CFKCGSRTHMSGSCTQDRCFRCGEEGHLSPYCRK--GIVCNLCGKRGHAFAQC 385
           C+ CG   H+   CT+ +C+RCGE GH++  C K   + C  CG+ GH   +C
Sbjct: 119 CYSCGEFGHIQKDCTKVKCYRCGETGHVAINCSKTSEVNCYRCGESGHLAREC 171



 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 32/108 (29%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 289 RFGIWTGEYKCEIELRQGEGGVRHLPGAFFLGAERGYSWYKGQ-PKTCFKCGSRTHMSGS 347
           R G W  E  C     +G G      G F   ++RG+ +     P  C++CG   H++  
Sbjct: 11  RSGHWARE--CPTGGGRGRGMRSRGRGGFT--SDRGFQFVSSSLPDICYRCGESGHLAKD 66

Query: 348 CT--QDRCFRCGEEGHLSPYCR-----KGIVCNLCGKRGHAFAQCPKA 388
           C   +D C+ CG  GH++  C+     +   C  CGK GH    C  A
Sbjct: 67  CDLQEDACYNCGRGGHIAKDCKEPKREREQCCYNCGKPGHLARDCDHA 114



 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 335 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKAVHN 391
           C+ CG   H++  C    + +C+ CGE GH+   C K + C  CG+ GH    C K   +
Sbjct: 98  CYNCGKPGHLARDCDHADEQKCYSCGEFGHIQKDCTK-VKCYRCGETGHVAINCSKT--S 154

Query: 392 SVAAQLTGVAGH 403
            V     G +GH
Sbjct: 155 EVNCYRCGESGH 166



 Score = 39.7 bits (91), Expect = 0.005
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 31/82 (37%)

Query: 335 CFKCGSRTHMSGSC------------------TQDR------------CFRCGEEGHLSP 364
           CFKCG   H +  C                  T DR            C+RCGE GHL+ 
Sbjct: 6   CFKCGRSGHWARECPTGGGRGRGMRSRGRGGFTSDRGFQFVSSSLPDICYRCGESGHLAK 65

Query: 365 YC-RKGIVCNLCGKRGHAFAQC 385
            C  +   C  CG+ GH    C
Sbjct: 66  DCDLQEDACYNCGRGGHIAKDC 87


>gi|30795231 brain abundant, membrane attached signal protein 1
           [Homo sapiens]
          Length = 227

 Score = 46.6 bits (109), Expect = 4e-05
 Identities = 46/163 (28%), Positives = 68/163 (41%), Gaps = 20/163 (12%)

Query: 10  ERKRGRPQLLPPARPAARGEEADG------GREKMGWAQVVKNLAEKKGEFREPRPPRRE 63
           E K G+ +  P      + EE +G       +E+   A+  K     + +   P+ P +E
Sbjct: 50  EAKEGKEK--PDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQE 107

Query: 64  EESGG--GGGSA-----GLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKG 116
           + + G   GG A         PA  AAP  G+ P    G+PK +   PA  A    K  G
Sbjct: 108 QAAPGPAAGGEAPKAAEAAAAPAESAAPAAGEEPSKEEGEPK-KTEAPAAPAAQETKSDG 166

Query: 117 A-AEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAA 158
           A A   +   +EAA ++  TPA     E  +  P    PAA+A
Sbjct: 167 APASDSKPGSSEAAPSSKETPA---ATEAPSSTPKAQGPAASA 206



 Score = 32.7 bits (73), Expect = 0.60
 Identities = 27/77 (35%), Positives = 33/77 (42%), Gaps = 8/77 (10%)

Query: 93  GRGDPKGRRRDPAGEA-----VDPRKKKGAAEA-GRRKKAEAAAAAMATPARPGEAEDAA 146
           G+ + K   +D A         +P K +GAAEA     KA     A   PA  GEA  AA
Sbjct: 64  GKAEEKEGEKDAAAAKEEAPKAEPEKTEGAAEAKAEPPKAPEQEQAAPGPAAGGEAPKAA 123

Query: 147 ERPLQDEPAAAAGPGKG 163
           E      PA +A P  G
Sbjct: 124 EAAA--APAESAAPAAG 138



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 13/82 (15%)

Query: 95  GDPKGRRRDPAGEAVDPRKKK--------GAAEAGRRKKAEAAAAAMATPARPGEAEDAA 146
           G PK      A E  + ++ K        G AE    +K  AAA   A  A P + E AA
Sbjct: 35  GTPKESEPQAAAEPAEAKEGKEKPDQDAEGKAEEKEGEKDAAAAKEEAPKAEPEKTEGAA 94

Query: 147 ERPLQ-----DEPAAAAGPGKG 163
           E   +     ++  AA GP  G
Sbjct: 95  EAKAEPPKAPEQEQAAPGPAAG 116


>gi|42558260 zinc finger, CCHC domain containing 13 [Homo sapiens]
          Length = 166

 Score = 46.2 bits (108), Expect = 5e-05
 Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 335 CFKCGSRTHMSGSCT---QDRCFRCGEEGHLSPYCRKGIVCNLCGKRGHAFAQCPKA 388
           C+ CG   H++  C    + +C+ CG+ GH+   C + + C  CG+ GH    C KA
Sbjct: 91  CYTCGRLGHLARDCDRQKEQKCYSCGKLGHIQKDCAQ-VKCYRCGEIGHVAINCSKA 146



 Score = 37.7 bits (86), Expect = 0.019
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 7/61 (11%)

Query: 334 TCFKCGSRTHMSGSCTQ--DRCFRCGEEGHLSPYCR-----KGIVCNLCGKRGHAFAQCP 386
           TC+ CG     + +C    + C+ CG  GH++  C+     +   C  CG+ GH    C 
Sbjct: 46  TCYCCGESGRNAKNCVLLGNICYNCGRSGHIAKDCKDPKRERRQHCYTCGRLGHLARDCD 105

Query: 387 K 387
           +
Sbjct: 106 R 106


>gi|169162152 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 51/170 (30%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 7   AEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEES 66
           A EE   G        RPAARG        ++  A  V +LA        P  PR     
Sbjct: 231 AREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAV-SLAASLARSPPPLQPRL---- 285

Query: 67  GGGGGSAGLGGP-AGLAAPDLGDFP----------PAGRGDPKGRRRDPAGEAVDPRKKK 115
            G      L  P AG  AP L  FP          PAG G P  R     GE V  R+++
Sbjct: 286 -GSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRR 344

Query: 116 GAAEAGRRKKAEAAAAAM----ATPARPGEAEDAAERPLQDEPAAAAGPG 161
           G  E   R + +  A       A PA PG A +   R  +       GPG
Sbjct: 345 GGEERRVRGRRQGCALGSPPIPAGPAAPGRAGE--RRAARQWRKRGGGPG 392


>gi|169161145 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 520

 Score = 45.4 bits (106), Expect = 9e-05
 Identities = 51/170 (30%), Positives = 61/170 (35%), Gaps = 23/170 (13%)

Query: 7   AEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEES 66
           A EE   G        RPAARG        ++  A  V +LA        P  PR     
Sbjct: 231 AREEAAAGSRGRGGAERPAARGSAQQPPLARLLLASAV-SLAASLARSPPPLQPRL---- 285

Query: 67  GGGGGSAGLGGP-AGLAAPDLGDFP----------PAGRGDPKGRRRDPAGEAVDPRKKK 115
            G      L  P AG  AP L  FP          PAG G P  R     GE V  R+++
Sbjct: 286 -GSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGGEVVGARRRR 344

Query: 116 GAAEAGRRKKAEAAAAAM----ATPARPGEAEDAAERPLQDEPAAAAGPG 161
           G  E   R + +  A       A PA PG A +   R  +       GPG
Sbjct: 345 GGEERRVRGRRQGCALGSPPIPAGPAAPGRAGE--RRAARQWRKRGGGPG 392


>gi|169171388 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 62  REEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAG 121
           R+ +  GGGG  G GG  G A         A  G P GRRR P  E   P++ +G   A 
Sbjct: 45  RDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPA-PKEFQGDGAAA 103

Query: 122 RRKKAEAAAAAMATPARPG---EAEDAAERPLQDEPAAAAGPG 161
           R     A  +A   P   G     E A+ER  + E A   GPG
Sbjct: 104 RADALTAGKSAEPAPGGEGGERGEESASER--ESERAPGRGPG 144


>gi|239749096 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 154

 Score = 43.5 bits (101), Expect = 3e-04
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 6/103 (5%)

Query: 62  REEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAG 121
           R+ +  GGGG  G GG  G A         A  G P GRRR P  E   P++ +G   A 
Sbjct: 45  RDCDIKGGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPA-PKEFQGDGAAA 103

Query: 122 RRKKAEAAAAAMATPARPG---EAEDAAERPLQDEPAAAAGPG 161
           R     A  +A   P   G     E A+ER  + E A   GPG
Sbjct: 104 RADALTAGKSAEPAPGGEGGERGEESASER--ESERAPGRGPG 144


>gi|239743123 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 123

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 35/97 (36%), Positives = 41/97 (42%), Gaps = 6/97 (6%)

Query: 68  GGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAE 127
           GGGG  G GG  G A         A  G P GRRR P  E   P++ +G   A R     
Sbjct: 20  GGGGGGGAGGAEGGAGGAGRARERAESGRPCGRRRHPQAEPA-PKEFQGDGAAARADALT 78

Query: 128 AAAAAMATPARPG---EAEDAAERPLQDEPAAAAGPG 161
           A  +A   P   G     E A+ER  + E A   GPG
Sbjct: 79  AGKSAEPAPGGEGGERGEESASER--ESERAPGRGPG 113


>gi|196259805 zinc finger, CCHC domain containing 9 [Homo sapiens]
          Length = 271

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 19/73 (26%)

Query: 335 CFKCGSRTHMSGSCTQD-----------RCFRCGEEGHLSPYC---RKGIV-----CNLC 375
           C++CGS  H    C              +CF CGE GHLS  C    KG+      C LC
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLC 216

Query: 376 GKRGHAFAQCPKA 388
           G   H    CP++
Sbjct: 217 GSVEHLKKDCPES 229



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 367 RKGIVCNLCGKRGHAFAQCPKAVHN 391
           +  +VC  C K GH  A CP A+ N
Sbjct: 125 KNAMVCFHCRKPGHGIADCPAALEN 149


>gi|196259803 zinc finger, CCHC domain containing 9 [Homo sapiens]
          Length = 271

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 19/73 (26%)

Query: 335 CFKCGSRTHMSGSCTQD-----------RCFRCGEEGHLSPYC---RKGIV-----CNLC 375
           C++CGS  H    C              +CF CGE GHLS  C    KG+      C LC
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLC 216

Query: 376 GKRGHAFAQCPKA 388
           G   H    CP++
Sbjct: 217 GSVEHLKKDCPES 229



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 367 RKGIVCNLCGKRGHAFAQCPKAVHN 391
           +  +VC  C K GH  A CP A+ N
Sbjct: 125 KNAMVCFHCRKPGHGIADCPAALEN 149


>gi|14150027 zinc finger, CCHC domain containing 9 [Homo sapiens]
          Length = 271

 Score = 43.1 bits (100), Expect = 4e-04
 Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 19/73 (26%)

Query: 335 CFKCGSRTHMSGSCTQD-----------RCFRCGEEGHLSPYC---RKGIV-----CNLC 375
           C++CGS  H    C              +CF CGE GHLS  C    KG+      C LC
Sbjct: 157 CYRCGSTEHEITKCKAKVDPALGEFPFAKCFVCGEMGHLSRSCPDNPKGLYADGGGCKLC 216

Query: 376 GKRGHAFAQCPKA 388
           G   H    CP++
Sbjct: 217 GSVEHLKKDCPES 229



 Score = 29.3 bits (64), Expect = 6.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 367 RKGIVCNLCGKRGHAFAQCPKAVHN 391
           +  +VC  C K GH  A CP A+ N
Sbjct: 125 KNAMVCFHCRKPGHGIADCPAALEN 149


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 59/194 (30%), Positives = 63/194 (32%), Gaps = 36/194 (18%)

Query: 5   GGAEEERKRG-RPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRP--PR 61
           G A EE KRG R +  P   P   GE    G      A  V       GE   P P  P+
Sbjct: 461 GPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGFPGADGVAGPKGPAGERGSPGPAGPK 520

Query: 62  REEESGGGGGSAGLGGPAGLA------APDLGDFPPA-----GRGDPKG--RRRDPAGEA 108
                 G  G AGL G  GL        PD    PP      GR  P G    R  AG  
Sbjct: 521 GSPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVM 580

Query: 109 VDPRKKKGAAEAGRR----------------KKAEAAAAAMATPARP----GEAEDAAER 148
             P  K  A E G+                 K  EA A     PA P    GE   A   
Sbjct: 581 GFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 640

Query: 149 PLQDEPAAAAGPGK 162
             Q  P  A  PG+
Sbjct: 641 GFQGLPGPAGPPGE 654



 Score = 39.3 bits (90), Expect = 0.006
 Identities = 49/169 (28%), Positives = 57/169 (33%), Gaps = 37/169 (21%)

Query: 20   PPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESG-----GGGGSAG 74
            PP  P   G+E  GG+   G        A + GE   P PP    E G     G  G+ G
Sbjct: 894  PPGPPGPAGKE--GGKGPRGET----GPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPG 947

Query: 75   LGGPAGLAA----------------PDL-GDFPPAGRGDPKGR--RRDPAGEAVDPRKKK 115
              GP G+A                 P L G     G+  P G    R P G    P    
Sbjct: 948  TPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAG 1007

Query: 116  GAAEAGRRKKAEAAAAAMATPAR---PGEAEDAAERPLQDEPAAAAGPG 161
               E+GR    E A  A  +P R   PG   D  E      P A   PG
Sbjct: 1008 PPGESGR----EGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPG 1052



 Score = 36.6 bits (83), Expect = 0.041
 Identities = 36/111 (32%), Positives = 42/111 (37%), Gaps = 12/111 (10%)

Query: 57  PRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDP--KGRRRD-----PAGEAV 109
           P  P     + G  G  G  GPAG A P   D  P  +G+P   G + D     PAG A 
Sbjct: 789 PAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPA- 847

Query: 110 DPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGP 160
            P    G   A   K A  +A        PG    AA R     P+  AGP
Sbjct: 848 GPPGPIGNVGAPGAKGARGSAGPPGATGFPG----AAGRVGPPGPSGNAGP 894



 Score = 34.7 bits (78), Expect = 0.16
 Identities = 28/95 (29%), Positives = 32/95 (33%), Gaps = 14/95 (14%)

Query: 68  GGGGSAGLGGPAGLAAPDLGDFPPAGRGDP-KGRRRDPAGEAVDPRKKKGAAEAGRRKKA 126
           G  G  GL GP G   P     PP   G+P       P G    P K     EAG+    
Sbjct: 182 GPSGPRGLPGPPGAPGPQGFQGPPGEPGEPGASGPMGPRGPPGPPGKNGDDGEAGK---- 237

Query: 127 EAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
                    P RPGE      +  +  P  A  PG
Sbjct: 238 ---------PGRPGERGPPGPQGARGLPGTAGLPG 263



 Score = 33.5 bits (75), Expect = 0.35
 Identities = 46/169 (27%), Positives = 60/169 (35%), Gaps = 17/169 (10%)

Query: 6    GAEEER----KRGRPQLLPP----ARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREP 57
            GA  ER      G P L  P     R  A G E   GR+    A+  +      G    P
Sbjct: 989  GASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGPPGAP 1048

Query: 58   RPPRREEESGGGG--GSAGLGGPAGLAAP--DLGDFPPAGRGDPKGRRRDPAGEAVDPRK 113
              P      G  G  G  G  GPAG A P   +G   PAG   P+G + +  GE  D   
Sbjct: 1049 GAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGE-TGEQGDRGI 1107

Query: 114  KKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGK 162
            K     +G     +       +P   G +  +     +  P +A  PGK
Sbjct: 1108 KGHRGFSG----LQGPPGPPGSPGEQGPSGASGPAGPRGPPGSAGAPGK 1152



 Score = 32.3 bits (72), Expect = 0.78
 Identities = 47/183 (25%), Positives = 57/183 (31%), Gaps = 42/183 (22%)

Query: 12  KRGRPQLLPPA----RPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESG 67
           +RGRP    PA       A G     G                KGE   P+ PR  E   
Sbjct: 309 ERGRPGAPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGE-AGPQGPRGSEGPQ 367

Query: 68  GGGGSAGLGGPAGLA-------------------APDLGDFP----------PAGRGDPK 98
           G  G  G  GPAG A                   AP +   P          P G G P 
Sbjct: 368 GVRGEPGPPGPAGAAGPAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPP 427

Query: 99  GRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAA 158
           G    P G + +P       + G   K E     +  P  PG A +  +R  + EP    
Sbjct: 428 G----PKGNSGEPGAPGSKGDTG--AKGEPGPVGVQGP--PGPAGEEGKRGARGEPGPTG 479

Query: 159 GPG 161
            PG
Sbjct: 480 LPG 482



 Score = 32.3 bits (72), Expect = 0.78
 Identities = 35/141 (24%), Positives = 45/141 (31%), Gaps = 13/141 (9%)

Query: 24  PAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPAGLAA 83
           P  +G+  D G +    +     +    G    P P        G  G  G  GP+G A 
Sbjct: 739 PGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGP-------AGAPGDKGESGPSGPAG 791

Query: 84  PDLGDFPPAGRGDP----KGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARP 139
           P      P  RG+P          P G    P  K    +AG   K +A     A PA P
Sbjct: 792 PTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAG--AKGDAGPPGPAGPAGP 849

Query: 140 GEAEDAAERPLQDEPAAAAGP 160
                    P       +AGP
Sbjct: 850 PGPIGNVGAPGAKGARGSAGP 870



 Score = 31.2 bits (69), Expect = 1.7
 Identities = 35/151 (23%), Positives = 48/151 (31%), Gaps = 8/151 (5%)

Query: 20  PPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRP------PRREEESGGGG--G 71
           PP    A G++ + G          +     +GE   P P      P  + + G  G  G
Sbjct: 771 PPGPAGAPGDKGESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG 830

Query: 72  SAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAA 131
            AG  G AG   P     PP   G+        A  +  P    G   A  R      + 
Sbjct: 831 DAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSG 890

Query: 132 AMATPARPGEAEDAAERPLQDEPAAAAGPGK 162
               P  PG A     +  + E   A  PG+
Sbjct: 891 NAGPPGPPGPAGKEGGKGPRGETGPAGRPGE 921



 Score = 29.6 bits (65), Expect = 5.1
 Identities = 25/105 (23%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 57   PRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKG 116
            P+ PR ++   G  G  G+ G  G +       PP   G P  +    A     PR   G
Sbjct: 1089 PQGPRGDKGETGEQGDRGIKGHRGFSGLQ---GPPGPPGSPGEQGPSGASGPAGPRGPPG 1145

Query: 117  AAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
            +A A  +         +  P   G   DA        P     PG
Sbjct: 1146 SAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPG 1190


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 42/153 (27%), Positives = 55/153 (35%), Gaps = 25/153 (16%)

Query: 20  PPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRP------PRREEESGGGG--- 70
           PP      G++ +GG   +      +    ++GE   P P      P +  E GG G   
Sbjct: 769 PPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGFPGAPGQNGEPGGKGERG 828

Query: 71  --GSAGLGGPAGLAAPDLGDFP--PAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKA 126
             G  G GGP G+A P  G  P  P G    KG R  P G         GAA     +  
Sbjct: 829 APGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGG--------PGAAGFPGARGL 880

Query: 127 EAAAAAMATPARPGEAEDAAERPLQDEPAAAAG 159
                +   P  PG +      P +D P   AG
Sbjct: 881 PGPPGSNGNPGPPGPSGS----PGKDGPPGPAG 909



 Score = 36.2 bits (82), Expect = 0.054
 Identities = 40/135 (29%), Positives = 50/135 (37%), Gaps = 18/135 (13%)

Query: 5   GGAEEERKRG----------RPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGE- 53
           GGA E  K G          R +   P  P A+GE+   G      A  +   A ++G  
Sbjct: 429 GGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPGEPGANGLPGAAGERGAP 488

Query: 54  -FREPRPPRR---EEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAV 109
            FR P  P     E+   G  G+ G  GP G A     D  P G G  +G    P G   
Sbjct: 489 GFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPG-MRGMPGSPGGPGS 547

Query: 110 D--PRKKKGAAEAGR 122
           D  P       E+GR
Sbjct: 548 DGKPGPPGSQGESGR 562



 Score = 33.1 bits (74), Expect = 0.46
 Identities = 38/119 (31%), Positives = 43/119 (36%), Gaps = 12/119 (10%)

Query: 50  KKGEFREPRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAV 109
           K GE   P+ P      GG  G  G  GP GL        PP   G P      P G+A 
Sbjct: 610 KNGE-TGPQGPPGPTGPGGDKGDTGPPGPQGLQGLPGTGGPPGENGKP--GEPGPKGDAG 666

Query: 110 DPRKKKGAAEAG----RRKKAEAAAAAM---ATPARPGEAEDAAERPLQDEPAAAAGPG 161
            P    G  +AG    R     A A  +   A P  P   + AA  P    P AA  PG
Sbjct: 667 APGAPGGKGDAGAPGERGPPGLAGAPGLRGGAGPPGPEGGKGAAGPP--GPPGAAGTPG 723



 Score = 31.2 bits (69), Expect = 1.7
 Identities = 36/146 (24%), Positives = 48/146 (32%), Gaps = 9/146 (6%)

Query: 20  PPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPA 79
           PP     +G     G         ++ +  ++G    P P   + E GG G   G+ G  
Sbjct: 700 PPGPEGGKGAAGPPGPPGAAGTPGLQGMPGERGGLGSPGPKGDKGEPGGPGAD-GVPGKD 758

Query: 80  GLAAP--DLGDFPPAGRGDPKGRRRDPAGEAV-DPRKKKG-AAEAGRRKKAEAAAAAMAT 135
           G   P   +G   PAG+   KG    P    +  PR   G   E G        A     
Sbjct: 759 GPRGPTGPIGPPGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETG----PPGPAGFPGA 814

Query: 136 PARPGEAEDAAERPLQDEPAAAAGPG 161
           P + GE     ER    E      PG
Sbjct: 815 PGQNGEPGGKGERGAPGEKGEGGPPG 840



 Score = 30.8 bits (68), Expect = 2.3
 Identities = 38/160 (23%), Positives = 52/160 (32%), Gaps = 22/160 (13%)

Query: 20   PPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPA 79
            PP    + G++   G      A     ++  KG+  +P     E+ S G  G  G  GP 
Sbjct: 892  PPGPSGSPGKDGPPGPAGNTGAPGSPGVSGPKGDAGQPG----EKGSPGAQGPPGAPGPL 947

Query: 80   GLA----APDLGDFP--PAGRGDP-----KGRRRDPAGEAVD-------PRKKKGAAEAG 121
            G+A    A  L   P  P  RG P     KG    P    +        P+   G A   
Sbjct: 948  GIAGITGARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTA 1007

Query: 122  RRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
                 +    +   P R G      +R     P A   PG
Sbjct: 1008 GEPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPG 1047



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 44/178 (24%), Positives = 55/178 (30%), Gaps = 32/178 (17%)

Query: 12  KRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGE--FREPRPPRREEESGGG 69
           +RGRP L  P    ARG +   G +           A   G    +    P     S G 
Sbjct: 307 ERGRPGL--PGAAGARGNDGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGA 364

Query: 70  GGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRR-------------------DPAGEAVD 110
            G  G  GP G A       PP   G P G+                      PAG    
Sbjct: 365 PGQRGEPGPQGHAGAQGPPGPPGINGSPGGKGEMGPAGIPGAPGLMGARGPPGPAGANGA 424

Query: 111 PRKKKGAAEAGRR-------KKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
           P  + GA E G+         + E   A +  P  PG   +  +     EP A   PG
Sbjct: 425 PGLRGGAGEPGKNGAKGEPGPRGERGEAGI--PGVPGAKGEDGKDGSPGEPGANGLPG 480



 Score = 30.0 bits (66), Expect = 3.9
 Identities = 39/154 (25%), Positives = 47/154 (30%), Gaps = 15/154 (9%)

Query: 12  KRGRPQLLPPARP-AARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPP--RREEESGG 68
           +RG P    PA P    GE+   G          +  A + G    P  P  R    S G
Sbjct: 484 ERGAPGFRGPAGPNGIPGEKGPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPG 543

Query: 69  GGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAV-DPRKKKGAAEAGRRKKAE 127
           G GS G  GP G      G+    G   P G R  P       P+   GA      +   
Sbjct: 544 GPGSDGKPGPPG----SQGESGRPGPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGP 599

Query: 128 AAAAAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
                   P + GE            P    GPG
Sbjct: 600 GGPGPQGPPGKNGETGPQG-------PPGPTGPG 626


>gi|169160903 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 426

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 35/119 (29%), Positives = 44/119 (36%), Gaps = 16/119 (13%)

Query: 57  PRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFP----------PAGRGDPKGRRRDPAG 106
           P+PP  +   G           AG  AP L  FP          PAG G P  R     G
Sbjct: 182 PKPPPLQPRLGSASPPRLAAPLAGSRAPSLSPFPRRCRRRAERSPAGHGLPLPRSLSRGG 241

Query: 107 EAVDPRKKKGAAEAGRRKKAEAAAAAM----ATPARPGEAEDAAERPLQDEPAAAAGPG 161
           E V  R+++G  E   R + +  A       A PA PG A +   R  +       GPG
Sbjct: 242 EVVGARRRRGGEERRVRGRRQGCALGSPPIPAGPAAPGRAGE--RRAARQWRKRGGGPG 298



 Score = 35.4 bits (80), Expect = 0.092
 Identities = 37/118 (31%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 58  RPPRREEESGGGGGSAGLGG--PAGLAAPD---LGDFPPAGRGDPKG------RRRDPAG 106
           RPP R  E  G   +AG  G   A LA P    LG  P   R    G      R R   G
Sbjct: 52  RPPTRAREWEGAAWAAGATGVGAALLALPGSRRLGRVPLTFREASPGPAPGAPRARGSCG 111

Query: 107 EAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGR 164
               PR+++  + AG+R     AAAA A P R         R +      + GP   R
Sbjct: 112 REPGPRRRRAPSSAGKR----PAAAARAAPPRQRSLARCLPRSVGSCVRPSVGPSLPR 165


>gi|7657387 CCR4-NOT transcription complex, subunit 3 [Homo sapiens]
          Length = 753

 Score = 42.4 bits (98), Expect = 8e-04
 Identities = 41/149 (27%), Positives = 59/149 (39%), Gaps = 18/149 (12%)

Query: 20  PPARPAARGEEADGGREKMG-----WAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAG 74
           P A P+A G +A             +AQ V   A       +PRPP  +   GGGGGS G
Sbjct: 346 PAAPPSALGPKASPAPSHNSGTPAPYAQAVAPPAPSGPSTTQPRPPSVQPSGGGGGGSGG 405

Query: 75  LGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMA 134
            GG +  +    G     G G   G     +  A  P +   ++  G      A++ A+ 
Sbjct: 406 -GGSSSSSNSSAG----GGAGKQNGATSYSSVVADSPAEVALSSSGGN----NASSQALG 456

Query: 135 TPARPGEAEDAAERPLQDEPAAAAGPGKG 163
            P+ P     +  +    EP+AAA  G G
Sbjct: 457 PPSGPHNPPPSTSK----EPSAAAPTGAG 481


>gi|95147559 ankyrin repeat domain 43 [Homo sapiens]
          Length = 549

 Score = 42.0 bits (97), Expect = 0.001
 Identities = 45/168 (26%), Positives = 58/168 (34%), Gaps = 21/168 (12%)

Query: 18  LLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEF--REPRPPRREEESGGGGGSAGL 75
           LL    P  R    D  ++ +    VVK L   K     ++PRPP  E    G  G+A  
Sbjct: 42  LLDAGDPRGRAARRDRFKQFVNNVAVVKELDGVKFVVLRKKPRPPEPEPAPFGPPGAAAQ 101

Query: 76  GG-------PAGLAAPDLGDF--------PPAGRGDPKGRRRDPAGEAVDPRKKKGAAEA 120
                    P   +AP             PP   G P   +  P G A +P +  G   A
Sbjct: 102 PSKPTSTVLPRSASAPGAPPLVRVPRPVEPPGDLGLPTEPQDTPGGPASEPAQPPGERSA 161

Query: 121 G----RRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGR 164
                  + A+A     A  A P  A   A  P  D P A  GPG  +
Sbjct: 162 DPPLPALELAQATERPSADAAPPPRAPSEAASPCSDPPDAEPGPGAAK 209


>gi|98985810 alpha 1 type XI collagen isoform B preproprotein [Homo
            sapiens]
          Length = 1818

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 50/174 (28%), Positives = 60/174 (34%), Gaps = 30/174 (17%)

Query: 20   PPARPAARGEE----ADGGREKMGWAQVVKNLAEK--KGEFREPRPPRREEESGGGGGSA 73
            PP  P  RG +    ADG +   G    V  + EK   GE   P PP       G GG  
Sbjct: 1232 PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE----AGVGGPK 1287

Query: 74   GLGGPAGLAAPDLGDFPPAGRG-----DPKGRRRDPAGEAVDPRKKKGAAEAGR-----R 123
            G  G  G A P     PP  +G      PKG    P G   DP        AG+      
Sbjct: 1288 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPPGEPGPAGQDGVGGD 1346

Query: 124  KKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGRFLVRICFQGDEGA 177
            K  +        P   GEA        +  P AA   G+         QG++GA
Sbjct: 1347 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR---------QGEKGA 1391



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 39/121 (32%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 50  KKGEFREPRPPRREEESGGGGGSAGLGGPAGLAAP-----DLGDFPPAGR-GDP--KGRR 101
           +KGE     P    E   G  G AG+ GP GL  P     D GD  P GR G P   G  
Sbjct: 439 QKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLP 498

Query: 102 RDPAGEAVDPRKKKGAAEAGRRKKA-EAAAAAMATPARPGEAEDAAERPLQDEPAAAAGP 160
             P    + P +  G    G    A EA A A+   AR           L   P    GP
Sbjct: 499 GPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 558

Query: 161 G 161
           G
Sbjct: 559 G 559



 Score = 33.1 bits (74), Expect = 0.46
 Identities = 41/142 (28%), Positives = 50/142 (35%), Gaps = 10/142 (7%)

Query: 5   GGAEEERKRGRPQLLP-PARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRRE 63
           G A E+ K G P L   P R   +G     G       +  + +A K G  R  R P   
Sbjct: 841 GQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP-RGQRGPTGP 899

Query: 64  EESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRR-----RDPAGEAVDPRKKKGAA 118
             S G  G  G  GP G +  D    PP  RG P+G +       P G    P K     
Sbjct: 900 RGSRGARGPTGKPGPKGTSGGDGPPGPPGERG-PQGPQGPVGFPGPKGPPGPPGKDGLPG 958

Query: 119 EAGRRKKAEAAAAAMATPARPG 140
             G+R   E        P  PG
Sbjct: 959 HPGQR--GETGFQGKTGPPGPG 978



 Score = 32.3 bits (72), Expect = 0.78
 Identities = 33/93 (35%), Positives = 37/93 (39%), Gaps = 13/93 (13%)

Query: 57   PRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKG 116
            P+ P     S G  GSAG  GP GL           GR  P+G    PAGE   P +K  
Sbjct: 1061 PQGPPGPVGSPGERGSAGTAGPIGL----------PGRPGPQG-PPGPAGEKGAPGEKGP 1109

Query: 117  AAEAGR-RKKAEAAAAAMATPA-RPGEAEDAAE 147
               AGR   +        A PA  PGE  D  E
Sbjct: 1110 QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGE 1142



 Score = 28.9 bits (63), Expect = 8.6
 Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 20  PPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPA 79
           PP     RGE+ + G   +      + L   +G    P  P       G  G  G  GP 
Sbjct: 638 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQP-------GMAGVDGPPGPK 690

Query: 80  GLAAPDLGDFPPAGRGDPKGR-RRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPAR 138
           G   P     PP  +G+P  +    P G    P +K    + G          A   P  
Sbjct: 691 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG----LAGLPGADGPPGH 746

Query: 139 PGEAEDAAER 148
           PG+   + E+
Sbjct: 747 PGKEGQSGEK 756


>gi|98985808 alpha 1 type XI collagen isoform C preproprotein [Homo
            sapiens]
          Length = 1767

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 50/174 (28%), Positives = 60/174 (34%), Gaps = 30/174 (17%)

Query: 20   PPARPAARGEE----ADGGREKMGWAQVVKNLAEK--KGEFREPRPPRREEESGGGGGSA 73
            PP  P  RG +    ADG +   G    V  + EK   GE   P PP       G GG  
Sbjct: 1181 PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE----AGVGGPK 1236

Query: 74   GLGGPAGLAAPDLGDFPPAGRG-----DPKGRRRDPAGEAVDPRKKKGAAEAGR-----R 123
            G  G  G A P     PP  +G      PKG    P G   DP        AG+      
Sbjct: 1237 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPPGEPGPAGQDGVGGD 1295

Query: 124  KKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGRFLVRICFQGDEGA 177
            K  +        P   GEA        +  P AA   G+         QG++GA
Sbjct: 1296 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR---------QGEKGA 1340



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 39/121 (32%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 50  KKGEFREPRPPRREEESGGGGGSAGLGGPAGLAAP-----DLGDFPPAGR-GDP--KGRR 101
           +KGE     P    E   G  G AG+ GP GL  P     D GD  P GR G P   G  
Sbjct: 388 QKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLP 447

Query: 102 RDPAGEAVDPRKKKGAAEAGRRKKA-EAAAAAMATPARPGEAEDAAERPLQDEPAAAAGP 160
             P    + P +  G    G    A EA A A+   AR           L   P    GP
Sbjct: 448 GPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 507

Query: 161 G 161
           G
Sbjct: 508 G 508



 Score = 33.1 bits (74), Expect = 0.46
 Identities = 41/142 (28%), Positives = 50/142 (35%), Gaps = 10/142 (7%)

Query: 5   GGAEEERKRGRPQLLP-PARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRRE 63
           G A E+ K G P L   P R   +G     G       +  + +A K G  R  R P   
Sbjct: 790 GQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP-RGQRGPTGP 848

Query: 64  EESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRR-----RDPAGEAVDPRKKKGAA 118
             S G  G  G  GP G +  D    PP  RG P+G +       P G    P K     
Sbjct: 849 RGSRGARGPTGKPGPKGTSGGDGPPGPPGERG-PQGPQGPVGFPGPKGPPGPPGKDGLPG 907

Query: 119 EAGRRKKAEAAAAAMATPARPG 140
             G+R   E        P  PG
Sbjct: 908 HPGQR--GETGFQGKTGPPGPG 927



 Score = 32.3 bits (72), Expect = 0.78
 Identities = 33/93 (35%), Positives = 37/93 (39%), Gaps = 13/93 (13%)

Query: 57   PRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKG 116
            P+ P     S G  GSAG  GP GL           GR  P+G    PAGE   P +K  
Sbjct: 1010 PQGPPGPVGSPGERGSAGTAGPIGL----------PGRPGPQG-PPGPAGEKGAPGEKGP 1058

Query: 117  AAEAGR-RKKAEAAAAAMATPA-RPGEAEDAAE 147
               AGR   +        A PA  PGE  D  E
Sbjct: 1059 QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGE 1091



 Score = 28.9 bits (63), Expect = 8.6
 Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 20  PPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPA 79
           PP     RGE+ + G   +      + L   +G    P  P       G  G  G  GP 
Sbjct: 587 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQP-------GMAGVDGPPGPK 639

Query: 80  GLAAPDLGDFPPAGRGDPKGR-RRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPAR 138
           G   P     PP  +G+P  +    P G    P +K    + G          A   P  
Sbjct: 640 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG----LAGLPGADGPPGH 695

Query: 139 PGEAEDAAER 148
           PG+   + E+
Sbjct: 696 PGKEGQSGEK 705


>gi|98985806 alpha 1 type XI collagen isoform A preproprotein [Homo
            sapiens]
          Length = 1806

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 50/174 (28%), Positives = 60/174 (34%), Gaps = 30/174 (17%)

Query: 20   PPARPAARGEE----ADGGREKMGWAQVVKNLAEK--KGEFREPRPPRREEESGGGGGSA 73
            PP  P  RG +    ADG +   G    V  + EK   GE   P PP       G GG  
Sbjct: 1220 PPGPPGPRGPQGPNGADGPQGPPGSVGSVGGVGEKGEPGEAGNPGPPGE----AGVGGPK 1275

Query: 74   GLGGPAGLAAPDLGDFPPAGRG-----DPKGRRRDPAGEAVDPRKKKGAAEAGR-----R 123
            G  G  G A P     PP  +G      PKG    P G   DP        AG+      
Sbjct: 1276 GERGEKGEAGPPGAAGPPGAKGPPGDDGPKG-NPGPVGFPGDPGPPGEPGPAGQDGVGGD 1334

Query: 124  KKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKGRFLVRICFQGDEGA 177
            K  +        P   GEA        +  P AA   G+         QG++GA
Sbjct: 1335 KGEDGDPGQPGPPGPSGEAGPPGPPGKRGPPGAAGAEGR---------QGEKGA 1379



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 39/121 (32%), Positives = 44/121 (36%), Gaps = 9/121 (7%)

Query: 50  KKGEFREPRPPRREEESGGGGGSAGLGGPAGLAAP-----DLGDFPPAGR-GDP--KGRR 101
           +KGE     P    E   G  G AG+ GP GL  P     D GD  P GR G P   G  
Sbjct: 427 QKGEPAVVEPGMLVEGPPGPAGPAGIMGPPGLQGPTGPPGDPGDRGPPGRPGLPGADGLP 486

Query: 102 RDPAGEAVDPRKKKGAAEAGRRKKA-EAAAAAMATPARPGEAEDAAERPLQDEPAAAAGP 160
             P    + P +  G    G    A EA A A+   AR           L   P    GP
Sbjct: 487 GPPGTMLMLPFRYGGDGSKGPTISAQEAQAQAILQQARIALRGPPGPMGLTGRPGPVGGP 546

Query: 161 G 161
           G
Sbjct: 547 G 547



 Score = 33.1 bits (74), Expect = 0.46
 Identities = 41/142 (28%), Positives = 50/142 (35%), Gaps = 10/142 (7%)

Query: 5   GGAEEERKRGRPQLLP-PARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRRE 63
           G A E+ K G P L   P R   +G     G       +  + +A K G  R  R P   
Sbjct: 829 GQAGEKGKLGVPGLPGYPGRQGPKGSTGFPGFPGANGEKGARGVAGKPGP-RGQRGPTGP 887

Query: 64  EESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRR-----RDPAGEAVDPRKKKGAA 118
             S G  G  G  GP G +  D    PP  RG P+G +       P G    P K     
Sbjct: 888 RGSRGARGPTGKPGPKGTSGGDGPPGPPGERG-PQGPQGPVGFPGPKGPPGPPGKDGLPG 946

Query: 119 EAGRRKKAEAAAAAMATPARPG 140
             G+R   E        P  PG
Sbjct: 947 HPGQR--GETGFQGKTGPPGPG 966



 Score = 32.3 bits (72), Expect = 0.78
 Identities = 33/93 (35%), Positives = 37/93 (39%), Gaps = 13/93 (13%)

Query: 57   PRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKG 116
            P+ P     S G  GSAG  GP GL           GR  P+G    PAGE   P +K  
Sbjct: 1049 PQGPPGPVGSPGERGSAGTAGPIGL----------PGRPGPQG-PPGPAGEKGAPGEKGP 1097

Query: 117  AAEAGR-RKKAEAAAAAMATPA-RPGEAEDAAE 147
               AGR   +        A PA  PGE  D  E
Sbjct: 1098 QGPAGRDGVQGPVGLPGPAGPAGSPGEDGDKGE 1130



 Score = 28.9 bits (63), Expect = 8.6
 Identities = 31/130 (23%), Positives = 44/130 (33%), Gaps = 12/130 (9%)

Query: 20  PPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPA 79
           PP     RGE+ + G   +      + L   +G    P  P       G  G  G  GP 
Sbjct: 626 PPGDDGMRGEDGEIGPRGLPGEAGPRGLLGPRGTPGAPGQP-------GMAGVDGPPGPK 678

Query: 80  GLAAPDLGDFPPAGRGDPKGR-RRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPAR 138
           G   P     PP  +G+P  +    P G    P +K    + G          A   P  
Sbjct: 679 GNMGPQGEPGPPGQQGNPGPQGLPGPQGPIGPPGEKGPQGKPG----LAGLPGADGPPGH 734

Query: 139 PGEAEDAAER 148
           PG+   + E+
Sbjct: 735 PGKEGQSGEK 744


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
           sapiens]
          Length = 1487

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 35/162 (21%)

Query: 13  RGRPQLLP-PARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPP--------RRE 63
           RG+P ++  P    A GE    G + +  A  ++ L  K GE     PP        R E
Sbjct: 596 RGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGE 655

Query: 64  EESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEA-----VDPRKKKGAA 118
           + + G  G  GL GP G          P G G   G +  P GEA     V PR ++G  
Sbjct: 656 QGAPGPSGFQGLPGPPG----------PPGEGGKPGDQGVP-GEAGAPGLVGPRGERGFP 704

Query: 119 EAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGP 160
                  A+        P  PG           D P  A+GP
Sbjct: 705 GERGSPGAQGLQGPRGLPGTPG----------TDGPKGASGP 736



 Score = 37.7 bits (86), Expect = 0.019
 Identities = 45/163 (27%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 12   KRGRPQLLPPARPAAR----------GEEADGGREKMGWAQVVKNLAEKKGEFREPRPPR 61
            + G P L  PA P             G E   G + +   + +  L  ++GE   P  P 
Sbjct: 940  RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPG 999

Query: 62   REEESG--GGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAE 119
               E G  G  G++G  GP G   P  G   PAG     GR   P  +   P  + GAA 
Sbjct: 1000 PSGEPGKQGAPGASGDRGPPGPVGPP-GLTGPAGE---PGREGSPGADG--PPGRDGAAG 1053

Query: 120  AGRRKKAEAAAAAMATPARPGEAEDAAERPLQDE--PAAAAGP 160
                +    A  A   P  PG    A     Q +   A A GP
Sbjct: 1054 VKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1096



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 44/166 (26%), Positives = 57/166 (34%), Gaps = 29/166 (17%)

Query: 23   RPAARGEEADGGREKMGWA------------QVVKNLAEKKGEFREPRPPRREEESGGGG 70
            +P A+GE+ + G++    A            Q    +   KG      PP      G  G
Sbjct: 844  QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 903

Query: 71   -----GSAGLGGPAGLAAPDLGDFPPAGRGD--PKGRRRDPA--GEAVDPRKK-----KG 116
                 GS G  GP G   P   D P   RGD  P GR  +P   G A  P +K      G
Sbjct: 904  RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG 963

Query: 117  AAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGK 162
             + A      +  A        PG+     ER     P  +  PGK
Sbjct: 964  PSGAEGPPGPQGLAGQRGIVGLPGQ---RGERGFPGLPGPSGEPGK 1006



 Score = 33.5 bits (75), Expect = 0.35
 Identities = 45/151 (29%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 21  PARPAARGEEA----DGGREKMGWAQVVKNLAEKKGEFREPRP--PRREEESGGGGGSAG 74
           P  P  +G       DG + + G A  VK  +   GE   P P  PR      G  G  G
Sbjct: 281 PGLPGVKGHRGYPGLDGAKGEAG-APGVKGESGSPGENGSPGPMGPR------GLPGERG 333

Query: 75  LGGPAGLAAP--DLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRR--KKAEAAA 130
             GPAG A    + G   PAG   P G    P G    P  K  A   G R  + A+   
Sbjct: 334 RTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP-GFPGAPGAKGEAGPTGARGPEGAQGPR 392

Query: 131 AAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
               TP  PG A  +        P A    G
Sbjct: 393 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAG 423



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 33/121 (27%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 50  KKGEFREPRPPRREEESGGGG--GSAGLGGPAGLAAPDLGDFPPAGRGD--PKGRRRD-- 103
           +KGE   P P       G  G  G  G  GPAG A P   D  P  +G+    G++ D  
Sbjct: 802 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 861

Query: 104 ---PAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGP 160
              P G +  P  +      G  K A  A         PG A           P     P
Sbjct: 862 APGPQGPSGAPGPQGPTGVTG-PKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 920

Query: 161 G 161
           G
Sbjct: 921 G 921



 Score = 30.4 bits (67), Expect = 3.0
 Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 16/120 (13%)

Query: 51  KGEFREPRPPRREEESG-----GGGGSAGLGGPAGL----AAPDLGDFPPAGRGDPKGRR 101
           KGE   P P  R+ E G     G  G  G  GP GL    AA   G F     G   G  
Sbjct: 140 KGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVM 199

Query: 102 RDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
           + P G  + PR   G A       A         P  PGE   +     +  P     PG
Sbjct: 200 QGPMG-PMGPRGPPGPA------GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 252



 Score = 30.4 bits (67), Expect = 3.0
 Identities = 37/149 (24%), Positives = 45/149 (30%), Gaps = 8/149 (5%)

Query: 20   PPARPAARGEEADGGREKMGWAQVVKNLAEKKGE--FREPRPPRREEESGGGGGSAGLGG 77
            PP  P   G     G      AQ     +   G    + P+ PR ++   G  G  GL G
Sbjct: 1072 PPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKG 1131

Query: 78   PAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATP- 136
              G         PP   GD       PAG +  PR   G      +  A      +  P 
Sbjct: 1132 HRGFTGLQGLPGPPGPSGDQGA--SGPAGPS-GPRGPPGPVGPSGKDGANGIPGPIGPPG 1188

Query: 137  --ARPGEAEDAAERPLQDEPAAAAGPGKG 163
               R GE   A        P     PG G
Sbjct: 1189 PRGRSGETGPAGPPGNPGPPGPPGPPGPG 1217



 Score = 29.6 bits (65), Expect = 5.1
 Identities = 48/174 (27%), Positives = 62/174 (35%), Gaps = 25/174 (14%)

Query: 9   EERKRGRPQLL-PPARPAARGEEAD-GGREKMGWAQVVKNLAEKKGEFREPRPPRREEES 66
           E+  +G P    P   P   GEE   G R + G    +    E+        P   ++  
Sbjct: 466 EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPG--QDGL 523

Query: 67  GGGGGSAGLGGPAGLAAPDLGDFPPAGRGDP--------KGRRRD--PAGEAVDPRKKKG 116
            G  G+ G  GP+GLA P   +  P   G+P         GR  D  P G+ V P    G
Sbjct: 524 AGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK-VGPSGAPG 582

Query: 117 AAEAGR-----RKKAEAAAAAMATP---ARPGEAEDAAERPLQDEPAAAAGPGK 162
             E GR      + A      M  P      GE   A E+ L   P     PGK
Sbjct: 583 --EDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGK 634


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
           sapiens]
          Length = 1418

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 45/162 (27%), Positives = 59/162 (36%), Gaps = 35/162 (21%)

Query: 13  RGRPQLLP-PARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPP--------RRE 63
           RG+P ++  P    A GE    G + +  A  ++ L  K GE     PP        R E
Sbjct: 527 RGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGKDGETGAAGPPGPAGPAGERGE 586

Query: 64  EESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEA-----VDPRKKKGAA 118
           + + G  G  GL GP G          P G G   G +  P GEA     V PR ++G  
Sbjct: 587 QGAPGPSGFQGLPGPPG----------PPGEGGKPGDQGVP-GEAGAPGLVGPRGERGFP 635

Query: 119 EAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGP 160
                  A+        P  PG           D P  A+GP
Sbjct: 636 GERGSPGAQGLQGPRGLPGTPG----------TDGPKGASGP 667



 Score = 37.7 bits (86), Expect = 0.019
 Identities = 45/163 (27%), Positives = 58/163 (35%), Gaps = 20/163 (12%)

Query: 12   KRGRPQLLPPARPAAR----------GEEADGGREKMGWAQVVKNLAEKKGEFREPRPPR 61
            + G P L  PA P             G E   G + +   + +  L  ++GE   P  P 
Sbjct: 871  RAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPG 930

Query: 62   REEESG--GGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAE 119
               E G  G  G++G  GP G   P  G   PAG     GR   P  +   P  + GAA 
Sbjct: 931  PSGEPGKQGAPGASGDRGPPGPVGPP-GLTGPAGE---PGREGSPGADG--PPGRDGAAG 984

Query: 120  AGRRKKAEAAAAAMATPARPGEAEDAAERPLQDE--PAAAAGP 160
                +    A  A   P  PG    A     Q +   A A GP
Sbjct: 985  VKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEAGAQGP 1027



 Score = 34.3 bits (77), Expect = 0.21
 Identities = 44/166 (26%), Positives = 57/166 (34%), Gaps = 29/166 (17%)

Query: 23  RPAARGEEADGGREKMGWA------------QVVKNLAEKKGEFREPRPPRREEESGGGG 70
           +P A+GE+ + G++    A            Q    +   KG      PP      G  G
Sbjct: 775 QPGAKGEQGEAGQKGDAGAPGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAG 834

Query: 71  -----GSAGLGGPAGLAAPDLGDFPPAGRGD--PKGRRRDPA--GEAVDPRKK-----KG 116
                GS G  GP G   P   D P   RGD  P GR  +P   G A  P +K      G
Sbjct: 835 RVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPPGRAGEPGLQGPAGPPGEKGEPGDDG 894

Query: 117 AAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGK 162
            + A      +  A        PG+     ER     P  +  PGK
Sbjct: 895 PSGAEGPPGPQGLAGQRGIVGLPGQ---RGERGFPGLPGPSGEPGK 937



 Score = 33.5 bits (75), Expect = 0.35
 Identities = 45/151 (29%), Positives = 53/151 (35%), Gaps = 18/151 (11%)

Query: 21  PARPAARGEEA----DGGREKMGWAQVVKNLAEKKGEFREPRP--PRREEESGGGGGSAG 74
           P  P  +G       DG + + G A  VK  +   GE   P P  PR      G  G  G
Sbjct: 212 PGLPGVKGHRGYPGLDGAKGEAG-APGVKGESGSPGENGSPGPMGPR------GLPGERG 264

Query: 75  LGGPAGLAAP--DLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRR--KKAEAAA 130
             GPAG A    + G   PAG   P G    P G    P  K  A   G R  + A+   
Sbjct: 265 RTGPAGAAGARGNDGQPGPAGPPGPVGPAGGP-GFPGAPGAKGEAGPTGARGPEGAQGPR 323

Query: 131 AAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
               TP  PG A  +        P A    G
Sbjct: 324 GEPGTPGSPGPAGASGNPGTDGIPGAKGSAG 354



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 33/121 (27%), Positives = 40/121 (33%), Gaps = 10/121 (8%)

Query: 50  KKGEFREPRPPRREEESGGGG--GSAGLGGPAGLAAPDLGDFPPAGRGD--PKGRRRD-- 103
           +KGE   P P       G  G  G  G  GPAG A P   D  P  +G+    G++ D  
Sbjct: 733 EKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 792

Query: 104 ---PAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGP 160
              P G +  P  +      G  K A  A         PG A           P     P
Sbjct: 793 APGPQGPSGAPGPQGPTGVTG-PKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPP 851

Query: 161 G 161
           G
Sbjct: 852 G 852



 Score = 30.4 bits (67), Expect = 3.0
 Identities = 35/120 (29%), Positives = 40/120 (33%), Gaps = 16/120 (13%)

Query: 51  KGEFREPRPPRREEESG-----GGGGSAGLGGPAGL----AAPDLGDFPPAGRGDPKGRR 101
           KGE   P P  R+ E G     G  G  G  GP GL    AA   G F     G   G  
Sbjct: 71  KGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFDEKAGGAQLGVM 130

Query: 102 RDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
           + P G  + PR   G A       A         P  PGE   +     +  P     PG
Sbjct: 131 QGPMG-PMGPRGPPGPA------GAPGPQGFQGNPGEPGEPGVSGPMGPRGPPGPPGKPG 183



 Score = 30.4 bits (67), Expect = 3.0
 Identities = 37/149 (24%), Positives = 45/149 (30%), Gaps = 8/149 (5%)

Query: 20   PPARPAARGEEADGGREKMGWAQVVKNLAEKKGE--FREPRPPRREEESGGGGGSAGLGG 77
            PP  P   G     G      AQ     +   G    + P+ PR ++   G  G  GL G
Sbjct: 1003 PPGSPGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAGEPGERGLKG 1062

Query: 78   PAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATP- 136
              G         PP   GD       PAG +  PR   G      +  A      +  P 
Sbjct: 1063 HRGFTGLQGLPGPPGPSGDQGA--SGPAGPS-GPRGPPGPVGPSGKDGANGIPGPIGPPG 1119

Query: 137  --ARPGEAEDAAERPLQDEPAAAAGPGKG 163
               R GE   A        P     PG G
Sbjct: 1120 PRGRSGETGPAGPPGNPGPPGPPGPPGPG 1148



 Score = 29.6 bits (65), Expect = 5.1
 Identities = 48/174 (27%), Positives = 62/174 (35%), Gaps = 25/174 (14%)

Query: 9   EERKRGRPQLL-PPARPAARGEEAD-GGREKMGWAQVVKNLAEKKGEFREPRPPRREEES 66
           E+  +G P    P   P   GEE   G R + G    +    E+        P   ++  
Sbjct: 397 EQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPG--QDGL 454

Query: 67  GGGGGSAGLGGPAGLAAPDLGDFPPAGRGDP--------KGRRRD--PAGEAVDPRKKKG 116
            G  G+ G  GP+GLA P   +  P   G+P         GR  D  P G+ V P    G
Sbjct: 455 AGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGK-VGPSGAPG 513

Query: 117 AAEAGR-----RKKAEAAAAAMATP---ARPGEAEDAAERPLQDEPAAAAGPGK 162
             E GR      + A      M  P      GE   A E+ L   P     PGK
Sbjct: 514 --EDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGAPGLRGLPGK 565


>gi|16579828 zinc finger protein 91 [Homo sapiens]
          Length = 570

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 33/106 (31%), Positives = 47/106 (44%), Gaps = 14/106 (13%)

Query: 52  GEFREPRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGR--------GDPKGRRRD 103
           GE  EPRPP ++++ GG    A    P     P+     PAG         G  +GR   
Sbjct: 3   GETEEPRPPEQQDQEGGEAAKAAPEEPQ-QRPPEAVAAAPAGTTSSRVLRGGRDRGRAAA 61

Query: 104 PAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERP 149
            A  A   R++K  AE  RR+++  +A     P  PG+   AA+ P
Sbjct: 62  AAAAAAVSRRRK--AEYPRRRRSSPSA---RPPDVPGQQPQAAKSP 102


>gi|27894378 chloride intracellular channel 6 [Homo sapiens]
          Length = 686

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 39/144 (27%), Positives = 52/144 (36%), Gaps = 17/144 (11%)

Query: 21  PARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPAG 80
           P  P A G EA+G     G  +              PR     +E+GGGG   G    A 
Sbjct: 28  PGEPGAAGGEAEGPEGSEGAEEA-------------PRGAAAVKEAGGGGPDRGPEAEAR 74

Query: 81  LAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATP---A 137
                 G+   A  G P+G      GE     ++   A  GR  + E    A   P   A
Sbjct: 75  GTRGAHGE-TEAEEGAPEGAEVPQGGEETSGAQQVEGASPGRGAQGEPRGEAQREPEDSA 133

Query: 138 RPGEAEDAAERPLQDEPAAAAGPG 161
            P   E+A +RP   E +A+   G
Sbjct: 134 APERQEEAEQRPEVPEGSASGEAG 157



 Score = 35.8 bits (81), Expect = 0.071
 Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 17/103 (16%)

Query: 25  AARGE-EADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGG----------GGGSA 73
           AA G+  AD G +++G     +   +++   R P  PR EE +GG          G  S 
Sbjct: 345 AAPGDARADAGEDRVGDGPQQEPGEDEERRERSPEGPREEEAAGGEEESPDSSPHGEASR 404

Query: 74  GLGGPAGLAAPDLGDFPPA-GRGDP---KGRRRDPAGEAVDPR 112
           G   P    +  L +  PA G G+     GRR D  GEA +PR
Sbjct: 405 GAAEPEAQLSNHLAEEGPAEGSGEAARVNGRRED--GEASEPR 445


>gi|239758013 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 819

 Score = 40.4 bits (93), Expect = 0.003
 Identities = 46/174 (26%), Positives = 66/174 (37%), Gaps = 41/174 (23%)

Query: 4   GGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRRE 63
           G G ++ R+RG+      A    RG    GG++K      V  +  +K + R  + PRR+
Sbjct: 319 GRGGKKPRRRGQKATKAAAAGTKRG---GGGQQKAA----VVGVKSRKKQRRRGKKPRRQ 371

Query: 64  EESGGGGGSAGLGGPAGLA-APDLGD-------------------FPPAGRGDPKGRRRD 103
           + S  G  S G G   GL  A   GD                     P G G  K RRR 
Sbjct: 372 KASAAGAKSRGGGDKKGLREAKRRGDGRKKPRWQNPRRRAQKAPAAKPRGGGSKKPRRRG 431

Query: 104 P-----------AGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAA 146
           P           +G    PR++    +  R+K AEA A +     +  +   AA
Sbjct: 432 PKAAKSRGGKSRSGGGKKPRRR---GQKARQKAAEAGAESRGDKKQGRQKASAA 482



 Score = 35.0 bits (79), Expect = 0.12
 Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 19/161 (11%)

Query: 4   GGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRRE 63
           GGG + +++R R Q       +  G+   GG +K+        LA  K         +  
Sbjct: 240 GGGKKPQKQRRRGQKAATGGKSRVGKSRGGGDKKLRRQGQNAALAGAKRRGAATAGEKPA 299

Query: 64  EESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRR-DPAGEAVDPRKKKGAAEAGR 122
            +  GG G   LG          G  P  GRG  K RRR   A +A     K+G    G+
Sbjct: 300 AKGRGGRGPKSLG----------GQNPRWGRGGKKPRRRGQKATKAAAAGTKRGG--GGQ 347

Query: 123 RKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGKG 163
           +K A     +     R G      ++P + + +AA    +G
Sbjct: 348 QKAAVVGVKSRKKQRRRG------KKPRRQKASAAGAKSRG 382



 Score = 34.7 bits (78), Expect = 0.16
 Identities = 30/113 (26%), Positives = 48/113 (42%), Gaps = 19/113 (16%)

Query: 26  ARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGG-----------SAG 74
           +RG+E   GR++   ++  K    ++ + R P+P     +S  GGG            A 
Sbjct: 197 SRGDEDKKGRQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAA 256

Query: 75  LGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAE 127
            GG + +           G GD K  RR     A+   K++GAA AG +  A+
Sbjct: 257 TGGKSRVG-------KSRGGGDKK-LRRQGQNAALAGAKRRGAATAGEKPAAK 301



 Score = 33.1 bits (74), Expect = 0.46
 Identities = 41/171 (23%), Positives = 58/171 (33%), Gaps = 14/171 (8%)

Query: 4   GGGAEEER-----KRGRPQLLPPARPAARGEEADGG----REKMGWAQVVKNLAEKKGEF 54
           GGG +        +RG+       +  A G ++ G     R+K   A     +   K   
Sbjct: 488 GGGLKSHSGKNLWRRGQKAEAAGEKATAAGAKSRGRKQPRRQKPAVAGAKSRVGGSKSRQ 547

Query: 55  REPRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPA----GRGDPKGRRRDPAGEAVD 110
           R+          GGGG     GG  G      G    A    G GD +   +  A     
Sbjct: 548 RQKAVAAGATSHGGGGNKQSRGG-GGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTK 606

Query: 111 PRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPG 161
            R   G  +A R+K A   A +   P R G+ + AA        A + G G
Sbjct: 607 SRSGDGGKKAWRQKAAGTGAKSRKKPWRRGQKDAAAAEKAWATGATSRGSG 657



 Score = 32.0 bits (71), Expect = 1.0
 Identities = 42/177 (23%), Positives = 63/177 (35%), Gaps = 22/177 (12%)

Query: 2   ATGGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLA--EKKGEFREPRP 59
           A G G  E R  G        + AA G ++ GGR +    +  K  A   KK  +R  + 
Sbjct: 92  AAGAGGAENRGGGEQ------KAAAAGTKSLGGRGRKPRRRGQKAAATGSKKPRWRAQKS 145

Query: 60  PRREEESGGGGG-----SAGLGGPAGLAAPDLGDFPPAGRGDPKGRRR--------DPAG 106
                ++ G G      +AG+    G             R   K RRR        D  G
Sbjct: 146 AAAGSKNRGAGAQKAAAAAGVKSQGGEKPQKAAAAGAKSRSGKKPRRRGAKSRGDEDKKG 205

Query: 107 EAVDPRKKKGAAEAGRRKK-AEAAAAAMATPARPGEAEDAAERPLQDEPAAAAGPGK 162
              + + + G    GRRKK      AA    +R G  +   ++  + + AA  G  +
Sbjct: 206 RQREAKSRFGKTRGGRRKKHRRPKPAAGGAKSRRGGGKKPQKQRRRGQKAATGGKSR 262



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 44/171 (25%), Positives = 59/171 (34%), Gaps = 29/171 (16%)

Query: 2   ATGGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPR 61
           AT  GA+  R R +P+   PA   A+     G + +     V        G         
Sbjct: 513 ATAAGAKS-RGRKQPRRQKPAVAGAKSR-VGGSKSRQRQKAVAAGATSHGGG-------G 563

Query: 62  REEESGGGGGSAGLGGPAGLAAPDLG--DFPP-------------AGRGDPKGRRRDPAG 106
            ++  GGGG      G    AA   G  D  P             +G G  K  R+  AG
Sbjct: 564 NKQSRGGGGNKPRQWGQTAAAAKTRGGGDKQPGWQKAAAGVTKSRSGDGGKKAWRQKAAG 623

Query: 107 EAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAA 157
                RKK       RR + +AAAA  A            ++P   +PAAA
Sbjct: 624 TGAKSRKK-----PWRRGQKDAAAAEKAWATGATSRGSGGKQPRWQKPAAA 669



 Score = 31.6 bits (70), Expect = 1.3
 Identities = 42/158 (26%), Positives = 60/158 (37%), Gaps = 21/158 (13%)

Query: 2   ATGGGAEEERKRGRPQLLPPARPAARGEEADGGREKMGWAQVVKNLAEKKGEFREPRPPR 61
           A  G   E RK+ R +     R  +RG   DGG+     A V  N  +++G+    +P  
Sbjct: 677 AAVGQEAEARKKPRRR-----RAKSRG---DGGQN----AAVGINPWQRRGK----KPRL 720

Query: 62  REEESGGGGGSAGLGGPAGLAAPDLGDFPPAGRGDPKGRRRDPAGEAVDPRKKKGAAEAG 121
            +   GGG  S G GG     A   G      R   K       G     R++ G A++ 
Sbjct: 721 GKSRGGGGAKSRGSGG-----AKSRGSGGAKSRSGKKAAASKSHGGGGAKRRRGGGAKSR 775

Query: 122 RRKKAEAAAAAMATPARPGEAEDAAERPLQDEPAAAAG 159
             +KA  A    A  A   +      R  + + AAA G
Sbjct: 776 SGEKAVTAGGQKAAAAGGKKPPRVKSRGGRGQKAAAGG 813



 Score = 30.8 bits (68), Expect = 2.3
 Identities = 31/125 (24%), Positives = 44/125 (35%), Gaps = 4/125 (3%)

Query: 35  REKMGWAQVVKNLAEKKGEFREPRPPRREEESGGGGGSAGLGGPAGLAAPDLGDFPPAGR 94
           R+K         L  +KG        +  +++ G GG+   GG    AA   G     GR
Sbjct: 61  RQKAAAGGKKARLRGQKGAVAGKEARQHWQKAAGAGGAENRGGGEQKAAA-AGTKSLGGR 119

Query: 95  GDPKGRRRDPAGEAVDPRKKKGAAEAGRRKKAEAAAAAMATPARPGEAEDAAERPLQDEP 154
           G    RR   A      + +  A ++         A A    A  G      E+P   + 
Sbjct: 120 GRKPRRRGQKAAATGSKKPRWRAQKSAAAGSKNRGAGAQKAAAAAGVKSQGGEKP---QK 176

Query: 155 AAAAG 159
           AAAAG
Sbjct: 177 AAAAG 181


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.138    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,091,006
Number of Sequences: 37866
Number of extensions: 1115851
Number of successful extensions: 11428
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 649
Number of HSP's that attempted gapping in prelim test: 9262
Number of HSP's gapped (non-prelim): 2334
length of query: 403
length of database: 18,247,518
effective HSP length: 105
effective length of query: 298
effective length of database: 14,271,588
effective search space: 4252933224
effective search space used: 4252933224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.