Guide to the Human Genome
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Name: CNBP Sequence: fasta or formatted (177aa) NCBI GI: 4827071
Description:

zinc finger protein 9 isoform 3

Referenced in:

Muscle
Zinc Finger Proteins

Other entries for this name:
alt prot [179aa] zinc finger protein 9 isoform 1
alt prot [178aa] zinc finger protein 9 isoform 2
alt prot [172aa] zinc finger protein 9 isoform 4
alt prot [171aa] zinc finger protein 9 isoform 5
alt prot [170aa] zinc finger protein 9 isoform 6
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         10           1
 C cysteine           12.4         22           2
 D aspartate           5.6         10           1
 E glutamate           7.9         14           1
 F phenylalanine       2.8          5           1
 G glycine            13.6         24           3
 H histidine           4.5          8           1
 I isoleucine          2.8          5           1
 K lysine              6.2         11           1
 L leucine             2.8          5           1
 M methionine          1.1          2           1
 N asparagine          2.8          5           1
 P proline             2.3          4           1
 Q glutamine           2.8          5           1
 R arginine            9.0         16           1
 S serine              7.3         13           3
 T threonine           4.0          7           1
 V valine              2.3          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            3.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 9 isoform 3 
CNBP                  0.987   zinc finger protein 9 isoform 2 
CNBP                  0.987   zinc finger protein 9 isoform 1 
CNBP                  0.941   zinc finger protein 9 isoform 6 
CNBP                  0.931   zinc finger protein 9 isoform 5 
CNBP                  0.928   zinc finger protein 9 isoform 4 
ZCCHC13               0.508   zinc finger, CCHC domain containing 13 
ZCCHC7                0.098   zinc finger, CCHC domain containing 7 
ZCCHC9                0.085   zinc finger, CCHC domain containing 9 
ZCCHC9                0.085   zinc finger, CCHC domain containing 9 
ZCCHC9                0.085   zinc finger, CCHC domain containing 9 
ZCCHC3                0.077   zinc finger, CCHC domain containing 3 
ZCCHC11               0.056   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.051   zinc finger, CCHC domain containing 11 isoform c [Ho...
ZNF534                0.048   zinc finger protein 534 isoform 2 
ZNF534                0.048   zinc finger protein 534 isoform 1 
ZNF235                0.048   zinc finger protein 93 homolog 
ZCCHC11               0.048   zinc finger, CCHC domain containing 11 isoform a [Ho...
LOC729806             0.037   PREDICTED: similar to hCG1725380 
LOC729806             0.037   PREDICTED: similar to hCG1725380 
LOC729806             0.037   PREDICTED: similar to hCG1725380 
ZNF696                0.037   zinc finger protein 696 
LIN28B                0.037   lin-28 homolog B 
LOC400713             0.037   zinc finger protein LOC400713 
LIN28                 0.037   lin-28 homolog 
ZCCHC6                0.035   zinc finger, CCHC domain containing 6 
RNF217                0.035   ring finger protein 217 
PRDM9                 0.032   PR domain containing 9 
ZNF99                 0.032   zinc finger protein 99 
LOC646864             0.032   PREDICTED: similar to hCG36734 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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