Guide to the Human Genome
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Name: CNBP Sequence: fasta or formatted (170aa) NCBI GI: 187608750
Description:

zinc finger protein 9 isoform 6

Referenced in:

Muscle
Zinc Finger Proteins

Other entries for this name:
alt prot [179aa] zinc finger protein 9 isoform 1
alt prot [178aa] zinc finger protein 9 isoform 2
alt prot [172aa] zinc finger protein 9 isoform 4
alt prot [171aa] zinc finger protein 9 isoform 5
alt prot [177aa] zinc finger protein 9 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         10           1
 C cysteine           12.9         22           2
 D aspartate           5.3          9           1
 E glutamate           8.2         14           1
 F phenylalanine       2.4          4           1
 G glycine            12.9         22           3
 H histidine           4.7          8           1
 I isoleucine          2.9          5           1
 K lysine              6.5         11           1
 L leucine             2.9          5           1
 M methionine          1.2          2           1
 N asparagine          2.9          5           1
 P proline             2.4          4           1
 Q glutamine           2.9          5           1
 R arginine            8.8         15           1
 S serine              7.1         12           3
 T threonine           3.5          6           1
 V valine              2.4          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            3.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 9 isoform 6 
CNBP                  0.989   zinc finger protein 9 isoform 5 
CNBP                  0.986   zinc finger protein 9 isoform 4 
CNBP                  0.981   zinc finger protein 9 isoform 3 
CNBP                  0.970   zinc finger protein 9 isoform 2 
CNBP                  0.967   zinc finger protein 9 isoform 1 
ZCCHC13               0.543   zinc finger, CCHC domain containing 13 
ZCCHC7                0.105   zinc finger, CCHC domain containing 7 
ZCCHC9                0.089   zinc finger, CCHC domain containing 9 
ZCCHC9                0.089   zinc finger, CCHC domain containing 9 
ZCCHC9                0.089   zinc finger, CCHC domain containing 9 
ZCCHC3                0.080   zinc finger, CCHC domain containing 3 
ZCCHC11               0.058   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZNF235                0.055   zinc finger protein 93 homolog 
PRDM9                 0.053   PR domain containing 9 
ZCCHC11               0.053   zinc finger, CCHC domain containing 11 isoform c [Ho...
ZNF534                0.050   zinc finger protein 534 isoform 2 
ZNF534                0.050   zinc finger protein 534 isoform 1 
ZCCHC11               0.050   zinc finger, CCHC domain containing 11 isoform a [Ho...
LOC729806             0.042   PREDICTED: similar to hCG1725380 
LOC729806             0.042   PREDICTED: similar to hCG1725380 
LOC729806             0.042   PREDICTED: similar to hCG1725380 
LIN28B                0.039   lin-28 homolog B 
LOC400713             0.039   zinc finger protein LOC400713 
LIN28                 0.039   lin-28 homolog 
ZCCHC6                0.036   zinc finger, CCHC domain containing 6 
ZNF99                 0.036   zinc finger protein 99 
RNF217                0.036   ring finger protein 217 
LOC728927             0.033   PREDICTED: hypothetical protein LOC728927 
LOC728927             0.033   PREDICTED: similar to hCG40110 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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