Guide to the Human Genome
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Name: CNBP Sequence: fasta or formatted (178aa) NCBI GI: 187608732
Description:

zinc finger protein 9 isoform 2

Referenced in:

Muscle
Zinc Finger Proteins

Other entries for this name:
alt prot [179aa] zinc finger protein 9 isoform 1
alt prot [172aa] zinc finger protein 9 isoform 4
alt prot [171aa] zinc finger protein 9 isoform 5
alt prot [170aa] zinc finger protein 9 isoform 6
alt prot [177aa] zinc finger protein 9 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.6         10           1
 C cysteine           12.4         22           2
 D aspartate           5.6         10           1
 E glutamate           8.4         15           1
 F phenylalanine       2.8          5           1
 G glycine            13.5         24           3
 H histidine           4.5          8           1
 I isoleucine          2.8          5           1
 K lysine              6.2         11           1
 L leucine             2.8          5           1
 M methionine          1.1          2           1
 N asparagine          2.8          5           1
 P proline             2.2          4           1
 Q glutamine           2.8          5           1
 R arginine            9.0         16           1
 S serine              7.3         13           3
 T threonine           3.9          7           1
 V valine              2.2          4           1
 W tryptophan          0.6          1           1
 Y tyrosine            3.4          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 9 isoform 2 
CNBP                  0.987   zinc finger protein 9 isoform 1 
CNBP                  0.981   zinc finger protein 9 isoform 3 
CNBP                  0.942   zinc finger protein 9 isoform 5 
CNBP                  0.931   zinc finger protein 9 isoform 4 
CNBP                  0.926   zinc finger protein 9 isoform 6 
ZCCHC13               0.495   zinc finger, CCHC domain containing 13 
ZCCHC7                0.098   zinc finger, CCHC domain containing 7 
ZCCHC9                0.079   zinc finger, CCHC domain containing 9 
ZCCHC9                0.079   zinc finger, CCHC domain containing 9 
ZCCHC9                0.079   zinc finger, CCHC domain containing 9 
ZCCHC3                0.077   zinc finger, CCHC domain containing 3 
ZCCHC11               0.056   zinc finger, CCHC domain containing 11 isoform a [Ho...
ZNF534                0.056   zinc finger protein 534 isoform 2 
ZNF534                0.056   zinc finger protein 534 isoform 1 
ZCCHC11               0.056   zinc finger, CCHC domain containing 11 isoform c [Ho...
ZNF235                0.050   zinc finger protein 93 homolog 
ZCCHC11               0.045   zinc finger, CCHC domain containing 11 isoform b [Ho...
LOC400713             0.045   zinc finger protein LOC400713 
LOC729806             0.045   PREDICTED: similar to hCG1725380 
LOC729806             0.045   PREDICTED: similar to hCG1725380 
LOC729806             0.045   PREDICTED: similar to hCG1725380 
ZNF480                0.040   zinc finger protein 480 
ZNF696                0.040   zinc finger protein 696 
ZNF99                 0.040   zinc finger protein 99 
ZNF416                0.037   zinc finger protein 416 
PRDM9                 0.037   PR domain containing 9 
ZNF681                0.037   zinc finger protein 681 
ZNF470                0.037   zinc finger protein 470 
ZCCHC6                0.034   zinc finger, CCHC domain containing 6 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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