Guide to the Human Genome
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Name: CNBP Sequence: fasta or formatted (172aa) NCBI GI: 187608738
Description:

zinc finger protein 9 isoform 4

Referenced in:

Muscle
Zinc Finger Proteins

Other entries for this name:
alt prot [179aa] zinc finger protein 9 isoform 1
alt prot [178aa] zinc finger protein 9 isoform 2
alt prot [171aa] zinc finger protein 9 isoform 5
alt prot [170aa] zinc finger protein 9 isoform 6
alt prot [177aa] zinc finger protein 9 isoform 3
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.8         10           1
 C cysteine           12.8         22           2
 D aspartate           5.2          9           1
 E glutamate           8.7         15           1
 F phenylalanine       2.3          4           1
 G glycine            12.8         22           3
 H histidine           4.7          8           1
 I isoleucine          2.9          5           1
 K lysine              6.4         11           1
 L leucine             2.9          5           1
 M methionine          1.2          2           1
 N asparagine          2.9          5           1
 P proline             2.3          4           1
 Q glutamine           2.9          5           1
 R arginine            8.7         15           1
 S serine              7.0         12           3
 T threonine           3.5          6           1
 V valine              2.9          5           1
 W tryptophan          0.6          1           1
 Y tyrosine            3.5          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   zinc finger protein 9 isoform 4 
CNBP                  0.984   zinc finger protein 9 isoform 5 
CNBP                  0.981   zinc finger protein 9 isoform 1 
CNBP                  0.975   zinc finger protein 9 isoform 6 
CNBP                  0.964   zinc finger protein 9 isoform 2 
CNBP                  0.956   zinc finger protein 9 isoform 3 
ZCCHC13               0.529   zinc finger, CCHC domain containing 13 
ZCCHC7                0.121   zinc finger, CCHC domain containing 7 
ZCCHC9                0.082   zinc finger, CCHC domain containing 9 
ZCCHC9                0.082   zinc finger, CCHC domain containing 9 
ZCCHC9                0.082   zinc finger, CCHC domain containing 9 
ZCCHC3                0.079   zinc finger, CCHC domain containing 3 
ZNF235                0.058   zinc finger protein 93 homolog 
ZCCHC11               0.055   zinc finger, CCHC domain containing 11 isoform c [Ho...
ZNF534                0.055   zinc finger protein 534 isoform 2 
ZNF534                0.055   zinc finger protein 534 isoform 1 
PRDM9                 0.055   PR domain containing 9 
LOC729806             0.047   PREDICTED: similar to hCG1725380 
LOC729806             0.047   PREDICTED: similar to hCG1725380 
LOC729806             0.047   PREDICTED: similar to hCG1725380 
ZCCHC11               0.047   zinc finger, CCHC domain containing 11 isoform b [Ho...
ZCCHC11               0.047   zinc finger, CCHC domain containing 11 isoform a [Ho...
LOC728927             0.044   PREDICTED: hypothetical protein LOC728927 
LOC728927             0.044   PREDICTED: similar to hCG40110 
LOC728927             0.041   PREDICTED: similar to hCG40110 
LOC728927             0.041   PREDICTED: similar to hCG40110 
LOC400713             0.041   zinc finger protein LOC400713 
ZNF696                0.041   zinc finger protein 696 
ZCCHC6                0.038   zinc finger, CCHC domain containing 6 
LOC646864             0.038   PREDICTED: similar to hCG36734 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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