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Search of human proteins with 122692281
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
(621 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|122692281 hypothetical protein LOC645369 [Homo sapiens] 1226 0.0
gi|29789291 transmembrane protein 200A [Homo sapiens] 119 8e-27
gi|51242137 transmembrane protein 200B [Homo sapiens] 74 5e-13
gi|153070260 myristoylated alanine-rich protein kinase C substra... 72 2e-12
gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo sapi... 60 6e-09
gi|239752594 PREDICTED: hypothetical protein, partial [Homo sapi... 59 1e-08
gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 57 7e-08
gi|110832843 TBP-associated factor 4 [Homo sapiens] 57 7e-08
gi|33188461 GATA binding protein 4 [Homo sapiens] 56 9e-08
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 56 9e-08
gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens] 55 1e-07
gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens] 55 1e-07
gi|18702331 OTU domain containing 7A [Homo sapiens] 55 1e-07
gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens] 55 3e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens] 54 3e-07
gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo sapi... 54 3e-07
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 53 7e-07
gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens] 53 7e-07
gi|102469037 jun D proto-oncogene [Homo sapiens] 53 1e-06
gi|163965366 nascent polypeptide-associated complex alpha subuni... 53 1e-06
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom... 52 2e-06
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom... 52 2e-06
gi|158854042 hypothetical protein LOC222183 [Homo sapiens] 52 2e-06
gi|169206489 PREDICTED: hypothetical protein [Homo sapiens] 51 3e-06
gi|169205942 PREDICTED: hypothetical protein [Homo sapiens] 51 3e-06
gi|123701326 zinc finger protein 831 [Homo sapiens] 51 4e-06
gi|48762934 alpha 2 type I collagen [Homo sapiens] 50 5e-06
gi|117938759 GNAS complex locus XLas [Homo sapiens] 50 5e-06
gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens] 50 6e-06
gi|45439359 triple functional domain (PTPRF interacting) [Homo s... 50 6e-06
>gi|122692281 hypothetical protein LOC645369 [Homo sapiens]
Length = 621
Score = 1226 bits (3171), Expect = 0.0
Identities = 621/621 (100%), Positives = 621/621 (100%)
Query: 1 MIATGGLLRISARKQDPLRPPSQIPKRKRKAKKRRKNDVVVVKGKLKLCSISGLIALCGI 60
MIATGGLLRISARKQDPLRPPSQIPKRKRKAKKRRKNDVVVVKGKLKLCSISGLIALCGI
Sbjct: 1 MIATGGLLRISARKQDPLRPPSQIPKRKRKAKKRRKNDVVVVKGKLKLCSISGLIALCGI 60
Query: 61 LVLLVGIAMAVVGYWPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAP 120
LVLLVGIAMAVVGYWPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAP
Sbjct: 61 LVLLVGIAMAVVGYWPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAP 120
Query: 121 GGVNSSSAGAPRSTPPARAASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLF 180
GGVNSSSAGAPRSTPPARAASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLF
Sbjct: 121 GGVNSSSAGAPRSTPPARAASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLF 180
Query: 181 ICANAVLHENRDKKTKIINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAA 240
ICANAVLHENRDKKTKIINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAA
Sbjct: 181 ICANAVLHENRDKKTKIINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAA 240
Query: 241 PPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAA 300
PPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAA
Sbjct: 241 PPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAA 300
Query: 301 SPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPE 360
SPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPE
Sbjct: 301 SPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPE 360
Query: 361 SWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDL 420
SWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDL
Sbjct: 361 SWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDL 420
Query: 421 SMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRA 480
SMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRA
Sbjct: 421 SMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRA 480
Query: 481 PPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPL 540
PPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPL
Sbjct: 481 PPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPL 540
Query: 541 REAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEK 600
REAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEK
Sbjct: 541 REAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEK 600
Query: 601 LIMISRSHAIGVEEELESTGI 621
LIMISRSHAIGVEEELESTGI
Sbjct: 601 LIMISRSHAIGVEEELESTGI 621
>gi|29789291 transmembrane protein 200A [Homo sapiens]
Length = 491
Score = 119 bits (298), Expect = 8e-27
Identities = 77/226 (34%), Positives = 115/226 (50%), Gaps = 58/226 (25%)
Query: 1 MIATGGLLR--ISARKQDPLRP-------PSQIPKRKRKAKKRRKNDVVVVKGKLKLCSI 51
MIATGG++ + ++QD R PS + K+ ++R + DVVVV+GK++L S
Sbjct: 1 MIATGGVITGLAALKRQDSARSQQHVNLSPSPATQEKKPIRRRPRADVVVVRGKIRLYSP 60
Query: 52 SGLIALCGILVLLVGIAMAVVGYWPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKN 111
SG L++G+ ++++G G
Sbjct: 61 SGFF-------LILGVLISIIGIAMAVLGY------------------------------ 83
Query: 112 RSRSHPRAPGGVNSSSAGAPRSTPPARAASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPL 171
P+ +++ + + T R G R F +LHSDK+K+ GP
Sbjct: 84 ----WPQKEHFIDAETTLSTNETQVIRNEG--------GVVVRFFEQHLHSDKMKMLGPF 131
Query: 172 IMGIGIFLFICANAVLHENRDKKTKIINLRDLYSTVIDVHSLRAKD 217
MGIGIF+FICANA+LHENRDK+TKII++RD+YSTVID+H+LR K+
Sbjct: 132 TMGIGIFIFICANAILHENRDKETKIIHMRDIYSTVIDIHTLRIKE 177
Score = 33.1 bits (74), Expect = 0.78
Identities = 13/18 (72%), Positives = 17/18 (94%)
Query: 591 VQRQFTNKEKLIMISRSH 608
+++ FTNKEKL+MISRSH
Sbjct: 450 IKKDFTNKEKLLMISRSH 467
>gi|51242137 transmembrane protein 200B [Homo sapiens]
Length = 307
Score = 73.6 bits (179), Expect = 5e-13
Identities = 63/214 (29%), Positives = 90/214 (42%), Gaps = 56/214 (26%)
Query: 29 RKAKKRRKNDVVVVKGKLKLCSISGLIALCGILVLLVGIAMAVVGYWPKATGTNREGGKQ 88
R+ + R + + V+ +L+L S SG A G LV+LVG+ +AV GYWP G
Sbjct: 29 RRRRPRSPPEPLRVRARLRLRSPSGAFAALGALVVLVGMGIAVAGYWPHRAGA------- 81
Query: 89 LPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPPARAASPSSSSTS 148
GS A ++SS + R R G RA P
Sbjct: 82 ---PGSR------AANASSPQMSELRREGRGGG----------------RAHGPH----- 111
Query: 149 VGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLFICANAVLHENRDKKTKIINLRDLYSTVI 208
++L++ GP+IMG+G+F+FICAN +L+ENRD +T R L V+
Sbjct: 112 --------------ERLRLLGPVIMGVGLFVFICANTLLYENRDLET-----RRLRQGVL 152
Query: 209 DVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPP 242
+LR D A + S A A P
Sbjct: 153 RAQALRPPDGPGWDCALLPSPGPRSPRAVGCAEP 186
>gi|153070260 myristoylated alanine-rich protein kinase C substrate
[Homo sapiens]
Length = 332
Score = 72.0 bits (175), Expect = 2e-12
Identities = 103/381 (27%), Positives = 140/381 (36%), Gaps = 75/381 (19%)
Query: 215 AKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFG 274
AK AAA AA ASS S A G + +NG S + + GS A
Sbjct: 10 AKGEAAAERPGEAAVASSPSKANGQEN-GHVKVNGDASPAAAESGAKEELQANGSAPAAD 68
Query: 275 AAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAG 334
A GS P+A G P AA+P + +SP +E P+ EA G
Sbjct: 69 KEEPAAAGSGAASPSAAEKGEPAAAAAP-EAGASP-VEKEAPAEGEAAEP---------G 117
Query: 335 SRRAAAATAAAAASSCSSP------APCSPPESWGRQSTASSFVDS-SLSAFALLPLQGG 387
S AA AA+AASS SSP P E+ ++ SF S LS F+ +
Sbjct: 118 SPTAAEGEAASAASSTSSPKAEDGATPSPSNETPKKKKKRFSFKKSFKLSGFSFKKNKKE 177
Query: 388 RDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVA 447
GG+AE P E G E G A A
Sbjct: 178 AGEGGEAEA-------PAAEGGKDEAAGG--------------------------AAAAA 204
Query: 448 ARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPP-----SPEPPPSPGSADPDSSPLAK 502
A A G + G AA +G A P +PE PP +S K
Sbjct: 205 AEAGAASGEQAAAPGEEAAAGEEGAAGGDPQEAKPQEAAVAPEKPP--------ASDETK 256
Query: 503 AASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSA 562
AA P ++E + ++ + PS++ G P +EA + E A SA
Sbjct: 257 AA--EEPSKVEEKKAEEAGASAAACEAPSAAGPGAPPEQEAAPAEEP-----AAAAASSA 309
Query: 563 VAAPVLGAEQSSPEGASQEPP 583
AAP ++++ PE + + PP
Sbjct: 310 CAAP---SQEAQPECSPEAPP 327
>gi|239746149 PREDICTED: hypothetical protein LOC80164 [Homo
sapiens]
Length = 816
Score = 60.1 bits (144), Expect = 6e-09
Identities = 104/405 (25%), Positives = 138/405 (34%), Gaps = 53/405 (13%)
Query: 216 KDLAAAAAAAAAAAASS----------SSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGG 265
+D A A AAA AA + S P P A+ + G V + L + GG
Sbjct: 5 RDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGG 64
Query: 266 CGGSGDAFGAA-AMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCP--REPPSLAEAV 322
GG+ A A + S PP P SP ++S R P L +
Sbjct: 65 IGGATIPESAPRAGPTRTSRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQKG 124
Query: 323 YSVYRERSGVAGSRRAA---AATAAAAASSCSSPAPCSPPESWGRQSTASS----FVDSS 375
+ E + G A +A +A A S P P +P + R+S A+ +
Sbjct: 125 LRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRPA 184
Query: 376 LSAFALLPLQGGRDRGGDA------EGASCSWQRPPGERGSQEIPRGELDLSMTNLRG-- 427
SA P +G R A E + + +RP G Q L S T L
Sbjct: 185 PSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPA 244
Query: 428 -AEGSMRGARREPEEPEGAV--AARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSP 484
+ S RG R P P +A R PR AL S+S L A PSP
Sbjct: 245 RSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPL----ATPSP 300
Query: 485 EPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAG 544
PPSP S+P + PSPP T S + Q+ + +PL
Sbjct: 301 SAPPSP------SAPPSLQTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPL---- 350
Query: 545 TSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQ 589
A A+A P L A S P P PQ
Sbjct: 351 --------ATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQ 387
Score = 47.8 bits (112), Expect = 3e-05
Identities = 77/320 (24%), Positives = 97/320 (30%), Gaps = 50/320 (15%)
Query: 299 AASPPDLASS--PRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPC 356
AA P L + P PR PP + A V +G G + A ++ AP
Sbjct: 18 AARAPGLLTPRPPGSPRPPPPVTPAALRVLGA-AGAVGRKPLAERAGGIGGATIPESAPR 76
Query: 357 SPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRG 416
+ P R P G +R A+ S PG P G
Sbjct: 77 AGPTRTSRP-----------------PASGRGERAPPAKNTSPGPVSSPGRASGTTRP-G 118
Query: 417 ELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLP 476
L + E RG E + A++A A R G P T A RR +G
Sbjct: 119 PLGQKGLRISAEETVARGKATEAPK-RSALSAGARRDTSGPTPGTPSPAMARRSRAAGTE 177
Query: 477 DYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRR---DSGSSQSDDPSSS 533
P+P P P P P +S S E SP RR G Q S
Sbjct: 178 VGLPRPAPSARPRP----PTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL 233
Query: 534 NKGYTPLREAGTSTESVLDAVAGQTRDSAV-------------------AAPVLGAEQSS 574
+ TPL S S S AAP LG SS
Sbjct: 234 SSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSS 293
Query: 575 P--EGASQEPPTAEQPQPVQ 592
P + PP+ P +Q
Sbjct: 294 PLATPSPSAPPSPSAPPSLQ 313
Score = 44.7 bits (104), Expect = 3e-04
Identities = 95/402 (23%), Positives = 137/402 (34%), Gaps = 54/402 (13%)
Query: 220 AAAAAAAAAAASSSSSAPAAAP--PGAIPLNGFLSYVQSRGLELKPGG----CGGSGDAF 273
A + AA AP+A P P P S + E P G G
Sbjct: 168 ARRSRAAGTEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQR 227
Query: 274 GAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVA 333
A+ L+ + P A SG RG +PR P P R
Sbjct: 228 PASRSLSSSATPLSSPARSGPSARG---------TPRAPAHPSQPKPKGLQALRPPQVTP 278
Query: 334 GSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGD 393
+ AA A ++S ++P+P +PP +A + + S A P Q G
Sbjct: 279 PRKDAAPALGPLSSSPLATPSPSAPPSP-----SAPPSLQTLPSPPATPPSQATTSLGSP 333
Query: 394 AEGASCSW-QRPPGERGSQEIPRGELDLSMTNLRGAEGSMRG------ARREPEEPEGAV 446
A+ S+ PP + P+ L++ L+ A P+ P A+
Sbjct: 334 TLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATPSPQAPN-AL 392
Query: 447 AARAARGQGGRLPRTGRYA-----ALRRRSTSGLPDYRAPPS---------PEPPPSPGS 492
A + P A A S S P +APPS P PP SP
Sbjct: 393 AVHLLQAPFSPPPSPPVQAPFSPPASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASP-P 451
Query: 493 ADPDSSPLAKAASP--SPPLRLEGSPPTRRDSGSSQS----DDPSSSNKGYTPLREAGTS 546
P ++P +A P +PPL+L PP + ++ P +S G P + +
Sbjct: 452 MSPSATPPPQAPPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASL 511
Query: 547 TESVLDAVAGQTRDSAVAAPVLGAEQSSPEG----ASQEPPT 584
S L A +AAP+L S P A + PPT
Sbjct: 512 PMSPL-ATPPPQAPPVLAAPLLQVPPSPPASPTLQAPRRPPT 552
Score = 37.7 bits (86), Expect = 0.032
Identities = 92/360 (25%), Positives = 121/360 (33%), Gaps = 78/360 (21%)
Query: 275 AAAMLAKGSWPPHPAAPSGGRP------RGAASPPDLASSPRCPREPPSLAEAVYSVYRE 328
A+ ++ + PP A PS P ASPP S+ P+ PP LA + +
Sbjct: 417 ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAK- 475
Query: 329 RSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGR 388
A A ++ A SPP S+ Q+ S +S A P Q
Sbjct: 476 ----------PPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP 525
Query: 389 DRGG------DAEGASCSWQRP-----PGERGSQEIPRGELDLS-----------MTNLR 426
+ AS + Q P PG S PR L L+ + L
Sbjct: 526 VLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLS 585
Query: 427 GAE--GSMRGARREPEE-------PEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLP- 476
G + G A PEE PEG AA P AA + S P
Sbjct: 586 GPDLAGHSSSATSTPEELRGYDSGPEGGAAASP--------PPDAELAACHPAAWSRGPA 637
Query: 477 ---DYR-APPSPEP-PPS--PGSAD----------PDS-SPLAKAASPSPPLRLEGSPPT 518
+R AP +P P PP+ PGSAD P+S +P A P P G
Sbjct: 638 PPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAA 697
Query: 519 RRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGA 578
+ S P + G PL G SV+ + +T A A G P GA
Sbjct: 698 AGAGAGASSRSPKQARLGELPL---GALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGA 754
Score = 36.6 bits (83), Expect = 0.071
Identities = 122/535 (22%), Positives = 171/535 (31%), Gaps = 74/535 (13%)
Query: 77 KATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPP 136
+A GT E G P + R PT S S + + +P SAG P
Sbjct: 172 RAAGT--EVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPA 229
Query: 137 ARAASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLFICANAVLHENRDKKTK 196
+R S SSS+T + R GP G A H ++ K
Sbjct: 230 SR--SLSSSATPLSSPARS-------------GPSARGT-------PRAPAHPSQPKPKG 267
Query: 197 IINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQS 256
+ +LR + AA A SSS A P A P +Q+
Sbjct: 268 L-------------QALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAPPSPSAPPSLQT 314
Query: 257 RGLELKPGGCGGSGD-AFGAAAMLAKGSWPPHP-----AAPSGGRPRGAASPPDLASSPR 310
L P + G+ + A S+ P P A P P A PP L + P
Sbjct: 315 --LPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPP-LQAPPS 371
Query: 311 CPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASS 370
P PP A S + +A + + P SPP S +T S
Sbjct: 372 PPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPPVQAPFSPPASPPVS--PSATPPS 429
Query: 371 FVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEG 430
SL+A L + A+ Q PP + L L+ +
Sbjct: 430 QAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPP------PLAAPPLQLAKPPPQAPPA 483
Query: 431 SMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRS-TSGLPDYRAPPSPEP--- 486
+ P + +A LP + + P + PPSP
Sbjct: 484 LATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPPASPT 543
Query: 487 ------PPSPGSADPDSSP-LAKAASPSPPLRLEGSPPTRRDSGSSQSDDPS--SSNKGY 537
PP+PG S P L A +P PP PP+R S + D + SS+
Sbjct: 544 LQAPRRPPTPGPDTSVSGPRLTLALAPGPP-----PPPSRSPSSTLSGPDLAGHSSSATS 598
Query: 538 TPLREAGTSTESVLDAVAGQTRDSAVAA--PVLGAEQSSPEGASQEPPTAEQPQP 590
TP G + A A D+ +AA P + +P A + P A P P
Sbjct: 599 TPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWP 653
Score = 30.8 bits (68), Expect = 3.9
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 224 AAAAAAASSSSSAPAAAPPGAIPLNGF----LSYVQSRGLEL--KPGGCGGSGDAFGAA 276
AAA A A +SS +P A G +PL + ++ SR L L G GGSG G A
Sbjct: 696 AAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGA 754
>gi|239752594 PREDICTED: hypothetical protein, partial [Homo
sapiens]
Length = 673
Score = 58.9 bits (141), Expect = 1e-08
Identities = 90/382 (23%), Positives = 148/382 (38%), Gaps = 35/382 (9%)
Query: 219 AAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELK-PGGCGGSG--DAFGA 275
+ A+ + AS + + P A+P G+ P LS + S L ++ P +G
Sbjct: 207 STASITRTLSRASPTGTPPRASPTGSPP-RASLSMMPSTALLIRTPPRASPTGMLSRTSL 265
Query: 276 AAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRC-------PREPPSLAEAVYSVYRE 328
M + S P+ PS P G S L+ +P PR P+ + S+ +
Sbjct: 266 TKMDSTASITRTPSRPSTASPTGTPSRASLSMTPSTASLMRMLPRASPTGMLSRTSLTKM 325
Query: 329 RSGVAGSR---RAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQ 385
S + SR RA+ + AS P+ SP + R S S +SL+ +
Sbjct: 326 DSTASISRTPPRASITRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASP 385
Query: 386 GGRDRGGDAEG--ASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPE-EP 442
G G ++ S R P P G L S T++ + + R P P
Sbjct: 386 TGTPPRASPTGTPSTASLTRKPPRAS----PTGML--SRTSITKMDSTASPTRTPPRASP 439
Query: 443 EGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAK 502
G + G R TG + S +G +P + P SP +A P SP ++
Sbjct: 440 TGTPPRASPTGTPSRASPTGTQSTA---SPTG-----SPSTASPTGSPSTASPTGSP-SR 490
Query: 503 AASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSA 562
A+ P R + T+ +S +S + PS ++ +TP + T + S A+ +R +
Sbjct: 491 ASLTRTPSR---ASLTKMESTASITRTPSRASPTWTPSTASPTGSPSTALAMGSPSRAAL 547
Query: 563 VAAPVLGAEQSSPEGASQEPPT 584
P + +P AS P+
Sbjct: 548 TRTPSRASLTRTPSRASLTTPS 569
Score = 42.4 bits (98), Expect = 0.001
Identities = 114/541 (21%), Positives = 181/541 (33%), Gaps = 57/541 (10%)
Query: 90 PPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPPARAASPSSSSTSV 149
P S R P+TA+ + + S+ P + + S + TPP + ++S S+
Sbjct: 8 PSRASPTRTPSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTPPRASLKGTTSMASL 67
Query: 150 GFF-FRIFSGYLHSDKLKVFGPLIMGIGIFLFICANAVLHENRDKKTKIINLRDLYSTVI 208
R + S L P + A+ R +T+ + L
Sbjct: 68 MVSPSRASLTRMQSSSLLTRTPSM----------ASLKRMPPRASRTRTLPRASLMRRPS 117
Query: 209 DVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRG-LELKPGGCG 267
R+ A+ + A+ S + S AA +P L+ R L + P
Sbjct: 118 TASLTRSPSRASLTTTPSRASLSMTPSTAAAL---TMPSRASLTRTPPRASLTMTP---- 170
Query: 268 GSGDAFGAAAMLAKGSWPPHPAA-PSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVY 326
+ A L + P PS P G S L +L+ A +
Sbjct: 171 -------STASLTRTPPRASPTGMPSRTSPTGMPSTASLTKMDSTASITRTLSRASPTGT 223
Query: 327 RERSGVAGSR-RAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQ 385
R+ GS RA+ + + A +P SP R S +DS+ S
Sbjct: 224 PPRASPTGSPPRASLSMMPSTALLIRTPPRASPTGMLSRTSLTK--MDSTASITRTPSRP 281
Query: 386 GGRDRGGDAEGASCSWQRPPGERGSQEIPRGELD--LSMTNLRGAEGSMRGARREPE--- 440
G AS S P + +PR LS T+L + + +R P
Sbjct: 282 STASPTGTPSRASLS-MTPSTASLMRMLPRASPTGMLSRTSLTKMDSTASISRTPPRASI 340
Query: 441 -------EPEGAVAARAARGQGGRLPRTGR--YAALRRRSTSGLPDYRAPPSPEPPPSPG 491
P G + + G R TG A+L S++ P PP P +P
Sbjct: 341 TRTPSRASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTASPT-GTPPRASPTGTPS 399
Query: 492 SAD-----PDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTS 546
+A P +SP + S + PTR +S + P ++ TP R + T
Sbjct: 400 TASLTRKPPRASPTGMLSRTSITKMDSTASPTRTPPRASPTGTPPRASPTGTPSRASPTG 459
Query: 547 TESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEKLIMISR 606
T+S A T + A+P +SP G+ P + T E I+R
Sbjct: 460 TQS----TASPTGSPSTASPTGSPSTASPTGSPSRASLTRTPS--RASLTKMESTASITR 513
Query: 607 S 607
+
Sbjct: 514 T 514
Score = 40.4 bits (93), Expect = 0.005
Identities = 74/341 (21%), Positives = 112/341 (32%), Gaps = 45/341 (13%)
Query: 222 AAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAK 281
A+ + +S + P+ A P P L+ + S P G G + +
Sbjct: 347 ASPTGKPSTASPTGTPSRASPTGSPSTASLTGLSSTA---SPTGTPPRASPTGTPSTASL 403
Query: 282 GSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAA 341
PP A+P+G R + + D +SP R PP + +G RA+
Sbjct: 404 TRKPPR-ASPTGMLSRTSITKMDSTASPT--RTPPRASPTGTPPRASPTGTPS--RASPT 458
Query: 342 TAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSW 401
+ AS SP+ SP G STAS S ++ P + + + +
Sbjct: 459 GTQSTASPTGSPSTASPT---GSPSTASPTGSPSRASLTRTPSRASLTKMESTASITRTP 515
Query: 402 QRP-PGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEE------PEGAVAARAARGQ 454
R P S P G T L S R P P A +R
Sbjct: 516 SRASPTWTPSTASPTGS---PSTALAMGSPSRAALTRTPSRASLTRTPSRASLTTPSRAS 572
Query: 455 GGRLPRTGRYAAL----------RRRSTSGLPDY-------------RAPPSPEPPPSPG 491
R P T + R S +G+P R PP P +P
Sbjct: 573 LTRTPSTVLLTRMPPSASPTGMPSRTSPTGMPSSALLTKMDSTASITRTPPRASPTETPP 632
Query: 492 SADPDSSPLAKAASPSPP-LRLEGSPPTRRDSGSSQSDDPS 531
A P +P + + +PP G+PP +G+ P+
Sbjct: 633 RASPTGTPPRASPTGTPPRASPTGTPPRASPTGTPSRASPT 673
Score = 30.8 bits (68), Expect = 3.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 515 SPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAP 566
+PPTR S +S + PS+++ TP R + T T S + +R S P
Sbjct: 2 APPTRTPSRASPTRTPSTASLTGTPSRASLTGTPSTASLMGTPSRASLTGTP 53
>gi|239751637 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 1124
Score = 56.6 bits (135), Expect = 7e-08
Identities = 99/389 (25%), Positives = 141/389 (36%), Gaps = 61/389 (15%)
Query: 216 KDLAAAAAAAAAAAASS----------SSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGG 265
+D A A AAA AA + S P P A+ + G V + L + GG
Sbjct: 5 RDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGG 64
Query: 266 CGGS---GDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSP---------RCPR 313
GG+ A A + G+ +PA+ RG +PP +SP
Sbjct: 65 IGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTT 124
Query: 314 EPPSLAEAVYSVYRERSGVAGSRRAA---AATAAAAASSCSSPAPCSPPESWGRQSTAS- 369
P L + + E + G A +A +A A S P P +P + R+S A+
Sbjct: 125 RPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAG 184
Query: 370 ---SFVDSSLSAFALLPLQGGRDRGGDA------EGASCSWQRPPGERGSQEIPRGELDL 420
+ SA P +G R A E + + +RP G Q L
Sbjct: 185 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSS 244
Query: 421 SMTNLRG---AEGSMRGARREPEEPE--GAVAARAARGQGGRLPRTGRYAALRRRSTSGL 475
S T L + S RG R P P +A R PR AL S+S L
Sbjct: 245 SATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPL 304
Query: 476 PDYRAPPSP-----EPPPSPGSADPDSSPLAKAASPSPPLRL--------EGSPPTRRDS 522
A PSP P P P +A ++PL PSPPL +PP+ +
Sbjct: 305 ----ATPSPSGTKARPVPPPDNA---ATPLPATLPPSPPLATPLPLAPPSPSAPPSLQTL 357
Query: 523 GSSQSDDPSSSNKGY-TPLREAGTSTESV 550
S + PS + TP +A S +++
Sbjct: 358 PSPPATPPSQAPPSMTTPPMQAPPSLQTI 386
Score = 51.6 bits (122), Expect = 2e-06
Identities = 80/316 (25%), Positives = 96/316 (30%), Gaps = 39/316 (12%)
Query: 299 AASPPDLASS--PRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPC 356
AA P L + P PR PP + A V V A A A+
Sbjct: 18 AARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGGIGGATI------- 70
Query: 357 SPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRG 416
PES R S SS + + P G +R A+ S PG P G
Sbjct: 71 --PESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRP-G 127
Query: 417 ELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLP 476
L + E RG E + A++A A R G P T A RR +G
Sbjct: 128 PLGQKGLRISAEETVARGKATEAPK-RSALSAGARRDTSGPTPGTPSPAMARRSRAAGTE 186
Query: 477 DYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRR---DSGSSQSDDPSSS 533
P+P P P P P +S S E SP RR G Q S
Sbjct: 187 VGLPRPAPSARPRP----PTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSL 242
Query: 534 NKGYTPLREAGTSTESVLDAVAGQTRDSAV-------------------AAPVLGAEQSS 574
+ TPL S S S AAP LG SS
Sbjct: 243 SSSATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSS 302
Query: 575 PEGASQEPPTAEQPQP 590
P T +P P
Sbjct: 303 PLATPSPSGTKARPVP 318
Score = 48.5 bits (114), Expect = 2e-05
Identities = 76/322 (23%), Positives = 110/322 (34%), Gaps = 30/322 (9%)
Query: 220 AAAAAAAAAAASSSSSAPAAAPPG------AIPLN----GFLSYVQSRGLELKPGGCGGS 269
+A A +A +SS PA+ PP A P G +S +PG G
Sbjct: 73 SAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQK 132
Query: 270 GDAFGAAAMLAKG--SWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAV----- 322
G A +A+G + P +A S G R + P SP R + V
Sbjct: 133 GLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP 192
Query: 323 YSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALL 382
R R G R++ ++ + + + S A P G Q AS + SS + +
Sbjct: 193 APSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSP 252
Query: 383 PLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEP 442
G RG A S +P +G Q + ++ + A G + + P
Sbjct: 253 ARSGPSARGTPRAPAHPSQPKP---KGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSP 309
Query: 443 EGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPP------PSPGSADPD 496
G A P A L P APPSP P PSP + P
Sbjct: 310 SGTKARPVPPPDNAATPLP---ATLPPSPPLATPLPLAPPSPSAPPSLQTLPSPPATPPS 366
Query: 497 SSPLAKAASP-SPPLRLEGSPP 517
+P + P P L+ PP
Sbjct: 367 QAPPSMTTPPMQAPPSLQTIPP 388
Score = 42.4 bits (98), Expect = 0.001
Identities = 93/346 (26%), Positives = 115/346 (33%), Gaps = 63/346 (18%)
Query: 285 PPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAA 344
PP A P P ASPP S+ PR PP LA V A
Sbjct: 728 PPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQ 787
Query: 345 AAASSCSSP--APCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGG------DAEG 396
A + + P A SPP S+ Q+ S +S A P Q +
Sbjct: 788 APPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPPVLAAPLLQVPPSPP 847
Query: 397 ASCSWQRP-----PGERGSQEIPRGELDLS-----------MTNLRGAE--GSMRGARRE 438
AS + Q P PG S PR L L+ + L G + G A
Sbjct: 848 ASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLSGPDLAGHSSSATST 907
Query: 439 PEE-------PEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLP----DYR-APPSPEP 486
PEE PEG AA P AA + S P +R AP +P P
Sbjct: 908 PEELRGYDSGPEGGAAASP--------PPDAELAACHPAAWSRGPAPPLAFRGAPGAPLP 959
Query: 487 -PPS--PGSAD----------PDS-SPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSS 532
PP+ PGSAD P+S +P A P P G + S P
Sbjct: 960 WPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAAAGAGAGASSRSPKQ 1019
Query: 533 SNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGA 578
+ G PL G SV+ + +T A A G P GA
Sbjct: 1020 ARLGELPL---GALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGA 1062
Score = 36.6 bits (83), Expect = 0.071
Identities = 34/120 (28%), Positives = 44/120 (36%), Gaps = 9/120 (7%)
Query: 476 PDYRAPPSP--EPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSS 533
P +AP SP PP SP + P +P + AA PPL++ SPP S + P +
Sbjct: 671 PPVQAPFSPPASPPVSPSATPPSQAPPSLAA---PPLQVPPSPPASPPMSPSATPPPQAP 727
Query: 534 NKGYTPLREAGTSTESVLDAVAGQTRDSAV----AAPVLGAEQSSPEGASQEPPTAEQPQ 589
P + S + T V AAP L S P P PQ
Sbjct: 728 PPLAAPPLQVPPSPPASPPMSPSATPPPRVPPLLAAPPLQVPPSPPASLPMSPLAKPPPQ 787
Score = 35.8 bits (81), Expect = 0.12
Identities = 88/407 (21%), Positives = 137/407 (33%), Gaps = 87/407 (21%)
Query: 196 KIINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQ 255
K ++ +ST + R + A A+ + SSS+ P ++P + P
Sbjct: 207 KSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSPARSGPSARGTPRAP 266
Query: 256 SRGLELKPGGCGG---------SGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLA 306
+ + KP G DA A L+ S P +PSG + R PPD A
Sbjct: 267 AHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLS--SSPLATPSPSGTKAR-PVPPPDNA 323
Query: 307 SSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQS 366
++P PPS A + P+P +PP S
Sbjct: 324 ATPLPATLPPS------------------------PPLATPLPLAPPSPSAPPSLQTLPS 359
Query: 367 TASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLR 426
++ + + P+Q PP Q IP ++ S+T+
Sbjct: 360 PPATPPSQAPPSMTTPPMQA-----------------PPS---LQTIPPIQVPHSLTS-- 397
Query: 427 GAEGSMRGARREPEEPEGAVAARAARGQGG-RLPRTGRYAALRRRSTSGLPDYRAPPSPE 485
+ + P P + +A G L T + + R T S
Sbjct: 398 -------PSLQAPPSPLALSSLQATTSLGSPTLQATHSFLTMSPRQTQA--------SLT 442
Query: 486 PPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGT 545
P P S PDS PL PL L SPP + + S + P SS PL+
Sbjct: 443 SPSRPASTPPDSPPL------QAPLSLPASPPLQ--TSLSPAVSPLSSPLTIHPLQAL-- 492
Query: 546 STESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQ 592
S L + + Q S++ P L + S + Q PP + P++
Sbjct: 493 ---SSLASHSPQAPLSSLIMPPLETQSSLAPPSLQTPPASLTTPPLE 536
Score = 35.4 bits (80), Expect = 0.16
Identities = 36/128 (28%), Positives = 50/128 (39%), Gaps = 13/128 (10%)
Query: 471 STSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPS------PPLRLEGSPPTRRDSGS 524
S+ P +APP+ PP G P SPLA + PPL+ SPP
Sbjct: 585 SSIATPPPQAPPALASPPLQGLPSPPLSPLATPPPQAPPXLALPPLQAPPSPPASPPLSP 644
Query: 525 SQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPT 584
+ P + N L +A S + Q S A+P + + P SQ PP+
Sbjct: 645 LATPSPQAPNALAVHLLQAPFSPP---PSPPVQAPFSPPASPPVSPSATPP---SQAPPS 698
Query: 585 AEQPQPVQ 592
P P+Q
Sbjct: 699 LAAP-PLQ 705
Score = 35.0 bits (79), Expect = 0.21
Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 10/113 (8%)
Query: 483 SPEPPPSPGSADPDSSP-LAKAASPSPPLRLEGSPPTRRDSGSSQSDDPS--SSNKGYTP 539
+P PP+PG S P L A +P PP PP+R S + D + SS+ TP
Sbjct: 854 APRRPPTPGPDTSVSGPRLTLALAPGPP-----PPPSRSPSSTLSGPDLAGHSSSATSTP 908
Query: 540 LREAGTSTESVLDAVAGQTRDSAVAA--PVLGAEQSSPEGASQEPPTAEQPQP 590
G + A A D+ +AA P + +P A + P A P P
Sbjct: 909 EELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPAPPLAFRGAPGAPLPWP 961
Score = 34.7 bits (78), Expect = 0.27
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 471 STSGLPDYRAPPS---------PEPPPSPGSADPDSSPLAKAASP--SPPLRLEGSPPTR 519
S S P +APPS P PP SP P ++P +A P +PPL++ SPP
Sbjct: 686 SPSATPPSQAPPSLAAPPLQVPPSPPASP-PMSPSATPPPQAPPPLAAPPLQVPPSPPAS 744
Query: 520 RDSGSSQSDDP 530
S + P
Sbjct: 745 PPMSPSATPPP 755
Score = 32.3 bits (72), Expect = 1.3
Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 479 RAPPSP--EPPPSPGSADPDSSPLAKAASPSPPLRLEGSPP 517
+APPSP PPP S+ P A A SPPL+ SPP
Sbjct: 570 QAPPSPLTTPPPETPSSIATPPPQAPPALASPPLQGLPSPP 610
Score = 30.8 bits (68), Expect = 3.9
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 224 AAAAAAASSSSSAPAAAPPGAIPLNGF----LSYVQSRGLEL--KPGGCGGSGDAFGAA 276
AAA A A +SS +P A G +PL + ++ SR L L G GGSG G A
Sbjct: 1004 AAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGA 1062
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 56.6 bits (135), Expect = 7e-08
Identities = 92/368 (25%), Positives = 123/368 (33%), Gaps = 48/368 (13%)
Query: 226 AAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWP 285
AA+AA AP A ++V S P G G+G A A A A G+ P
Sbjct: 34 AASAAHHHHLAPRTPEVRAAAAGALGNHVVSGS----PAGAAGAGPA--APAEGAPGAAP 87
Query: 286 PHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAA 345
P A RP G SPR P P A + G AGS A AAA
Sbjct: 88 EPPPA-GRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEGSAGS--CAPVPAAA 144
Query: 346 AASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPP 405
A ++ PAP P + G + A+ R G G P
Sbjct: 145 AVAAGPEPAPAGPAKPAGPAALAA--------------------RAGPGPGPGPG----P 180
Query: 406 GERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAA--RGQGGRLPRTGR 463
G P G GA ++ G+ A A + G LP
Sbjct: 181 GPGPGPGKPAGP---------GAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKP 231
Query: 464 YA---ALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRR 520
A ++ G AP +P PP +P A P ++P +P+ R G P
Sbjct: 232 AAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPP 291
Query: 521 DSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQT-RDSAVAAPVLGAEQSSPEGAS 579
+ + ++ N G A V+GQ +A AAP G + SP+
Sbjct: 292 TAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVV 351
Query: 580 QEPPTAEQ 587
Q P A Q
Sbjct: 352 QAAPPAAQ 359
Score = 48.5 bits (114), Expect = 2e-05
Identities = 100/416 (24%), Positives = 148/416 (35%), Gaps = 59/416 (14%)
Query: 216 KDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGA 275
K AA +A+ +S AAAP ++ NG + + PG + GA
Sbjct: 188 KPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPK-PAAPGTVIQTPPFVGA 246
Query: 276 AAMLAKGS----WPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSG 331
AA A + P PAAP+ P +P LA P P PP+ A AV ++G
Sbjct: 247 AAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGHPAGPPTAAPAVPPPAAAQNG 306
Query: 332 VAGSRRAAAATAAAA------------ASSCSSPAPCSPPESWGRQSTASSFVDSSLSAF 379
GS AA A A AA ++ ++PAP ES R A+ +L+A
Sbjct: 307 --GSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAAS 364
Query: 380 ALLPLQGGRDRGGDAEGA--SCSWQRPPGERGSQEIPRGELDLSMTNL-RGAEGSMRGAR 436
G +GA S + PP +P+G +L R + G R
Sbjct: 365 GPASTAASMVIGPTMQGALPSPAAVPPPAPGTPTGLPKGAAGAVTQSLSRTPTATTSGIR 424
Query: 437 ----------REPEEPE------------GAVAARAARGQGGRLPRTGRYAALRRRSTSG 474
R P+ P+ G V R+ GQ +P+ AL +
Sbjct: 425 ATLTPTVLAPRLPQPPQNPTNIQNFQLPPGMVLVRSENGQLLMIPQ----QALAQMQA-- 478
Query: 475 LPDYRAPPSPEPPPSPGSADPDSSP---LAKAASPSPPLRLEGSPPTRRDSGSSQSDDPS 531
+A P+ +P A P S+P ++ +P P+ PT SQ+ +
Sbjct: 479 ----QAHAQPQTTMAPRPATPTSAPPVQISTVQAPGTPIIARQVTPTTIIKQVSQAQ--T 532
Query: 532 SSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQ 587
+ T R G + VL A A G Q + GA+ A +
Sbjct: 533 TVQPSATLQRSPGVQPQLVLGGAAQTASLGTATAVQTGTPQRTVPGATTTSSAATE 588
Score = 37.4 bits (85), Expect = 0.041
Identities = 46/176 (26%), Positives = 54/176 (30%), Gaps = 25/176 (14%)
Query: 439 PEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPE------------- 485
P GA A A G G P A R R G P PPSP
Sbjct: 67 PAGAAGAGPAAPAEGAPGAAPEPP--PAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAA 124
Query: 486 ---PPP--SPGSADPDSSPLAKAASPSP----PLRLEGSPPTRRDSGSSQSDDPSSSNKG 536
PPP S GS P + A AA P P P + G +G P G
Sbjct: 125 KLRPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGP-GPGPG 183
Query: 537 YTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQ 592
P + AG L+ A AAP + + P P A +Q
Sbjct: 184 PGPGKPAGPGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQ 239
>gi|33188461 GATA binding protein 4 [Homo sapiens]
Length = 442
Score = 56.2 bits (134), Expect = 9e-08
Identities = 102/415 (24%), Positives = 147/415 (35%), Gaps = 51/415 (12%)
Query: 221 AAAAAAAAAASSSSSAPAAAPPGAIPLNGF-LSYVQSRGLELKPGGCGGSGDAFGAAAML 279
A A + ++S+P P +P + LSY+Q G GG G G + GAA+
Sbjct: 20 AGGPGAFMHGAGAASSPVYVPTPRVPSSVLGLSYLQGGGAGSASGGASG-GSSGGAASGA 78
Query: 280 AKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSV-------YRERSGV 332
G+ P G A +PP ++ P SLA A + Y G
Sbjct: 79 GPGTQQGSPGWSQAGADGAAYTPPPVSPRFSFPGTTGSLAAAAAAAAAREAAAYSSGGGA 138
Query: 333 AGSRRAAAATAAAA--ASSCSSPAPCSPPE---SWGRQSTASS--FVDSSLSAFALLPLQ 385
AG+ A A A S SSP P + SW + AS+ F L +
Sbjct: 139 AGAGLAGREQYGRAGFAGSYSSPYPAYMADVGASWAAAAAASAGPFDSPVLHSLPGRANP 198
Query: 386 GGRDRGGD-----AEGASCSWQRPPGERGSQEIPRGELDLS---MTNLRGAEGSMRGARR 437
R D +EG C G+ P D + + N G M G R
Sbjct: 199 AARHPNLDMFDDFSEGRECV------NCGAMSTPLWRRDGTGHYLCNACGLYHKMNGINR 252
Query: 438 EPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRA---------PPSPEPPP 488
+P+ ++A G +T L RR+ G P A P P
Sbjct: 253 PLIKPQRRLSASRRVGLSCANCQTTT-TTLWRRNAEGEPVCNACGLYMKLHGVPRPLAMR 311
Query: 489 SPGSADPDSSP--LAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTS 546
G P L K+ +P+ P E PP S +S + SSS + E G S
Sbjct: 312 KEGIQTRKRKPKNLNKSKTPAAPSGSESLPPASGASSNSSNATTSSSEEMRPIKTEPGLS 371
Query: 547 TESVLDAVAGQTRDSAVAA-------PVLGAEQSSPEGASQEPPTAEQPQPVQRQ 594
+ + QT + + PVL A + SP+G + P ++ PQ +Q
Sbjct: 372 SHYGHSSSVSQTFSVSAMSGHGPSIHPVLSALKLSPQGYAS--PVSQSPQTSSKQ 424
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 56.2 bits (134), Expect = 9e-08
Identities = 80/345 (23%), Positives = 123/345 (35%), Gaps = 42/345 (12%)
Query: 288 PAAPSGGRPRGAASPPDLASSPRCPRE------PPSLAEAVYSVYRER-SGVAGSRRAAA 340
P PS R A+SP PR P P L + + R SG + +
Sbjct: 1411 PRTPSRERSSSASSPEMKDGLPRTPSRRSRSGSSPGLRDGSGTPSRHSLSGSSPGMKDIP 1470
Query: 341 ATAAAAASSC-SSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASC 399
T + S C SSP P + P++ +S + S + + + G + D + +
Sbjct: 1471 RTPSRGRSECDSSPEPKALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVA- 1529
Query: 400 SWQRPPGERG----SQEIP---------RGELDLSMTNLRGAEGSMRGARREPEEPEGAV 446
+ P G+R SQE+ R E D S + +R R PE
Sbjct: 1530 --RTPLGQRSRSGSSQELDVKPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDS 1587
Query: 447 AARAA--RGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAA 504
+R + R + G P R+ SG P +P P P + SS +
Sbjct: 1588 KSRLSPRRSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGP 1647
Query: 505 SPSPPLRLEGS---PPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDS 561
SP E S PP R + P K TP R + + L A +R S
Sbjct: 1648 SPEGSSSTESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRS 1707
Query: 562 AVAAPVLGAEQSSPEGASQEP------PTAEQPQPVQRQFTNKEK 600
A+ SSPE S+ P P+ P+P ++ +++ +
Sbjct: 1708 RSAS-------SSPETRSRTPPRHRRSPSVSSPEPAEKSRSSRRR 1745
Score = 49.3 bits (116), Expect = 1e-05
Identities = 89/408 (21%), Positives = 147/408 (36%), Gaps = 53/408 (12%)
Query: 211 HSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGA------IPLNGFLSYVQSRGLELKPG 264
H+ ++A + AAA A AS +S+ A A GA +PL+ + L
Sbjct: 2345 HATAPVNIAGSRTAAALAPASLTSARMAPALSGANLTSPRVPLSAYERVSGRTSPPLLDR 2404
Query: 265 GCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYS 324
+ + + + + P P++ G P + PP PR P P + ++
Sbjct: 2405 ARSRTPPSAPSQSRMTSER-APSPSSRMGQAPSQSLLPP-AQDQPRSP-VPSAFSDQSRC 2461
Query: 325 VYRERSGVAGSRRAAAATAAAAASSC-------SSPAPCSPPESWGRQSTASSFVDSSLS 377
+ + + VAGS+ ++ A SS S PAP P G ++ S
Sbjct: 2462 LIAQTTPVAGSQSLSSGAVATTTSSAGDHNGMLSVPAPGVPHSDVGEPPASTGAQQPS-- 2519
Query: 378 AFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARR 437
AL LQ ++R + +S S S S ++ G+ S
Sbjct: 2520 --ALAALQPAKERRSSSSSSSSSSSSSSSSSSS----------SSSSSSGSSSSDSEGSS 2567
Query: 438 EPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDS 497
P +PE A+ R+P A + G P PEP P+ S
Sbjct: 2568 LPVQPEVALK---------RVPSPT--PAPKEAVREGRP-------PEPTPAKRKRRSSS 2609
Query: 498 SPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLR---EAGTSTESVLDAV 554
S + ++S S S + S SS S SSS+ +P + +A S
Sbjct: 2610 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPP 2669
Query: 555 AGQTRDSAVAAPV--LGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEK 600
G+ R + P+ L +S + + QP P +Q ++ E+
Sbjct: 2670 PGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSER 2717
Score = 46.6 bits (109), Expect = 7e-05
Identities = 103/463 (22%), Positives = 163/463 (35%), Gaps = 87/463 (18%)
Query: 208 IDVHSLRAKDLA--AAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGG 265
+ + SLR A A+ AA+AAA + +SA A P A+ L + + + L
Sbjct: 2215 VPLMSLRTAPAANLASRIPAASAAAMNLASARTPAIPTAVNLADSRTPAAAAAMNLASPR 2274
Query: 266 CGGSGDAFGAA------AMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLA 319
+ A A A + PAA + G+ +PP A+ P R P + A
Sbjct: 2275 TAVAPSAVNLADPRTPTAPAVNLAGARTPAALAALSLTGSGTPPTAANYPSSSRTPQAPA 2334
Query: 320 EAVYSVYRERS-------GVAGSRRAAAATAAAAASSCSSPA-----------PCS---- 357
A ++ RS +AGSR AAA A+ S+ +PA P S
Sbjct: 2335 SA--NLVGPRSAHATAPVNIAGSRTAAALAPASLTSARMAPALSGANLTSPRVPLSAYER 2392
Query: 358 -----------------PPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGD------- 393
PP + + S S S P Q D
Sbjct: 2393 VSGRTSPPLLDRARSRTPPSAPSQSRMTSERAPSPSSRMGQAPSQSLLPPAQDQPRSPVP 2452
Query: 394 ---AEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGA------RREPEEPEG 444
++ + C + GSQ + G + + T+ G M + EP
Sbjct: 2453 SAFSDQSRCLIAQTTPVAGSQSLSSGAV-ATTTSSAGDHNGMLSVPAPGVPHSDVGEPPA 2511
Query: 445 AVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSS------ 498
+ A+ P R ++ S+S + S S GS+ DS
Sbjct: 2512 STGAQQPSALAALQPAKERRSS-SSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPV 2570
Query: 499 ----PLAKAASPSPPLR---LEGSPP------TRRDSGSSQSDDPSSSNKGYTPLREAGT 545
L + SP+P + EG PP +R S SS S SSS+ + + +
Sbjct: 2571 QPEVALKRVPSPTPAPKEAVREGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSS 2630
Query: 546 STESVLDAVAGQTRDSAVAAPVLGAEQSSPEGAS-QEPPTAEQ 587
S+ S + + + S+ +P Q+ P+ AS ++PP E+
Sbjct: 2631 SSSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGER 2673
Score = 44.3 bits (103), Expect = 3e-04
Identities = 67/295 (22%), Positives = 117/295 (39%), Gaps = 28/295 (9%)
Query: 215 AKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLE-------LKPGGCG 267
++ L++ A A ++A + + PG +P + S G + L+P
Sbjct: 2472 SQSLSSGAVATTTSSAGDHNGMLSVPAPG-VPHSDVGEPPASTGAQQPSALAALQPAKER 2530
Query: 268 GSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSP-----RCPREPPSLAEAV 322
S + +++ + S ++ S G + L P R P P+ EAV
Sbjct: 2531 RSSSSSSSSSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAV 2590
Query: 323 YSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALL 382
A +R +++++++++SS SS + S S S++SS SS S+ +
Sbjct: 2591 REGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
Query: 383 PLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEP 442
P + G + + PPGER S+ PR +D S+ + R S RR +P
Sbjct: 2651 PAKPGPQA---LPKPASPKKPPPGERRSRS-PRKPID-SLRDSRSLSYSPVERRRPSPQP 2705
Query: 443 EGAVAARAARGQGGRLPRTG--RYAALRRRSTSGLPDYRAPPSPEPPPSPGSADP 495
++ +G R + G R + +RR R PSP P S P
Sbjct: 2706 SPRDQQSSSSERGSRRGQRGDSRSPSHKRR--------RETPSPRPMRHRSSRSP 2752
Score = 41.2 bits (95), Expect = 0.003
Identities = 70/295 (23%), Positives = 103/295 (34%), Gaps = 41/295 (13%)
Query: 327 RERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQG 386
R RSG + R+ + T+ + S SSP S R + SS + S +L
Sbjct: 721 RGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLR---- 776
Query: 387 GRDRGGDAEGASCSWQRPPGE-RGSQEIPRGELDLSMTNLRGAEGSM----RGARREPEE 441
R G + Q PP R P+ + S T R + S + + P
Sbjct: 777 -RSLSGSSPCPKQKSQTPPRRSRSGSSQPKAK---SRTPPRRSRSSSSPPPKQKSKTPSR 832
Query: 442 PEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRA----PPSPE------------ 485
+ ++ + + G PR G + + S P R+ P PE
Sbjct: 833 QSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHSCS 892
Query: 486 ---PPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLRE 542
PP S P SP ++++SP P ++ SP R SGSS S PS TP R
Sbjct: 893 GSSPPRVKSSTPPRQSP-SRSSSPQPKVKAIISPRQRSHSGSS-SPSPSRVTSRTTPRRS 950
Query: 543 AGTSTESVLD-------AVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQP 590
S S ++ + +G + P QS S P Q P
Sbjct: 951 RSVSPCSNVESRLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPKVKAQTPP 1005
Score = 33.9 bits (76), Expect = 0.46
Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 75 WPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAP--- 131
W ++ R G + P R T S S R RSH R+P S + P
Sbjct: 522 WGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARR 581
Query: 132 ---RSTPPARAASPSSSST 147
RS PAR S S + T
Sbjct: 582 GRSRSRTPARRRSRSRTPT 600
Score = 33.5 bits (75), Expect = 0.60
Identities = 113/496 (22%), Positives = 158/496 (31%), Gaps = 88/496 (17%)
Query: 96 HRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPPARAASPSSSSTSVGFFFRI 155
HR PT + S K R RS P S A RST A +AS S +S S R
Sbjct: 229 HRSPTPKSKRKSKDKKRKRSRSTTPA---PKSRRAHRSTS-ADSASSSDTSRSRS---RS 281
Query: 156 FSGYLHSDKLKVFGPLIM----GIGIFLFICANAVLHENRDKKTKIINLRDLYSTVIDVH 211
+ H+ L P G G +A E T+ + + +T
Sbjct: 282 AAAKTHTTALAGRSPSPASGRRGEG-------DAPFSEPGTTSTQRPSSPET-ATKQPSS 333
Query: 212 SLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGD 271
KD +A + S S+ PP PL + R GGS
Sbjct: 334 PYEDKDKDKKEKSATRPSPSPERSSTGPEPPAPTPL------LAERH--------GGSPQ 379
Query: 272 AFGAAAMLAKGSWPPHPAAPSGGR---------PRGAAS---PPD---------LASSPR 310
+ + PP A+P+ R P+ ++S PP +SSP
Sbjct: 380 PLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVSRHASSSPE 439
Query: 311 CPREPPS------LAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGR 364
P+ P+ ++ + S R G A ++ + T + SPA S R
Sbjct: 440 SPKPAPAPGSHREISSSPTSKNRSH-GRAKRDKSHSHTPSRRMGRSRSPATAKRGRSRSR 498
Query: 365 QSTASSFVDSSLSAF--ALLPLQGGRDRGGDAEGASCSWQRPPGERG--------SQEIP 414
T S + + + GR R G S S QRP R S+
Sbjct: 499 TPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNTQRRGRSRSAR 558
Query: 415 RGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSG 474
RG RG S ARR R+ R R A R RS S
Sbjct: 559 RGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSR 618
Query: 475 LPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEG----SPPTRRDSGSSQSDDP 530
P R + SP+ + + P R G P RR S++
Sbjct: 619 TPARRRSRT-------------RSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPAR 665
Query: 531 SSSNKGYTPLREAGTS 546
++ TP R +G S
Sbjct: 666 RGRSRSRTPARRSGRS 681
Score = 32.3 bits (72), Expect = 1.3
Identities = 64/255 (25%), Positives = 94/255 (36%), Gaps = 45/255 (17%)
Query: 335 SRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGD- 393
SRRA +T+A +ASS + S +S A+ ++L+ + P G R G
Sbjct: 257 SRRAHRSTSADSASSSDTSRSRS-------RSAAAKTHTTALAGRSPSPASGRRGEGDAP 309
Query: 394 -AEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPE------EPEGAV 446
+E + S QRP + + P + + + E S PE EP
Sbjct: 310 FSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKK--EKSATRPSPSPERSSTGPEPPAPT 367
Query: 447 AARAARGQGGRLPRT------------GRYAALRRRSTSGLPDY--------RAPPSPEP 486
A R G P + R RS P+ +PPSP+
Sbjct: 368 PLLAERHGGSPQPLATTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQ- 426
Query: 487 PPSPGSADPDSSPLAKAASPSPPLRLE--GSPPTRRDSGSSQSDDPSSSNKGYTPLREAG 544
P+ S SSP + +P+P E SP ++ S D S S +TP R G
Sbjct: 427 -PTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHS---HTPSRRMG 482
Query: 545 TSTESVLDAVAGQTR 559
S S A G++R
Sbjct: 483 RS-RSPATAKRGRSR 496
Score = 31.2 bits (69), Expect = 3.0
Identities = 19/69 (27%), Positives = 32/69 (46%)
Query: 76 PKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTP 135
P+ T R+ + SS ++++SSSS S + S S + +SSS+ +P
Sbjct: 2596 PEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPG 2655
Query: 136 PARAASPSS 144
P P+S
Sbjct: 2656 PQALPKPAS 2664
Score = 30.8 bits (68), Expect = 3.9
Identities = 21/71 (29%), Positives = 27/71 (38%)
Query: 76 PKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTP 135
P + T R G + P + R P SS S + ++ SSS TP
Sbjct: 1662 PPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPETRSRTP 1721
Query: 136 PARAASPSSSS 146
P SPS SS
Sbjct: 1722 PRHRRSPSVSS 1732
Score = 30.4 bits (67), Expect = 5.1
Identities = 34/135 (25%), Positives = 52/135 (38%), Gaps = 11/135 (8%)
Query: 468 RRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPT----RRDSG 523
R RST+ P R S S+D S AA+ + L G P+ RR G
Sbjct: 247 RSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAAAKTHTTALAGRSPSPASGRRGEG 306
Query: 524 SSQSDDPSSSNKGYTPLREAGT-STESVLDAVAGQTRDSAVAAPVLGAEQSS--PEGASQ 580
+ +P +++ E T S + ++ + P E+SS PE +
Sbjct: 307 DAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDKDKKEKSATRPSPSPERSSTGPEPPAP 366
Query: 581 EPPTAEQ----PQPV 591
P AE+ PQP+
Sbjct: 367 TPLLAERHGGSPQPL 381
Score = 30.4 bits (67), Expect = 5.1
Identities = 72/317 (22%), Positives = 105/317 (33%), Gaps = 33/317 (10%)
Query: 281 KGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAA 340
K P + PR +S P S R P + + R SG + S +
Sbjct: 882 KSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSG-SSSPSPSR 940
Query: 341 ATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDR--GGDAEGAS 398
T+ S +PCS ES R S SS + P R G +
Sbjct: 941 VTSRTTPRRSRSVSPCSNVES--RLLPRYSHSGSSSPDTKVKPETPPRQSHSGSISPYPK 998
Query: 399 CSWQRPPGERGSQEIPRGELDLSMTNL-RGAEGSMR-----GARREPEEPEGAVAARAAR 452
Q PPG S + S +L + GS+ + P E V++ +
Sbjct: 999 VKAQTPPGPSLSGSKSPCPQEKSKDSLVQSCPGSLSLCAGVKSSTPPGESYFGVSSLQLK 1058
Query: 453 GQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRL 512
GQ P RS + P+ R S P S S S ++ S SP L
Sbjct: 1059 GQSQTSPD--------HRSDTSSPEVRQSHSESP--SLQSKSQTSPKGGRSRSSSPVTEL 1108
Query: 513 EGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQ 572
P R+D G + +P+ ++G S E + + + +LG Q
Sbjct: 1109 ASRSPIRQDRGEFSA----------SPMLKSGMSPEQSRFQSDSSSYPTVDSNSLLG--Q 1156
Query: 573 SSPEGASQEPPTAEQPQ 589
S E A + A PQ
Sbjct: 1157 SRLETAESKEKMALPPQ 1173
Score = 30.4 bits (67), Expect = 5.1
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 8/66 (12%)
Query: 83 REGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPPARAASP 142
REG P R ++++SSSS S + S S +SSS+ + S+ + ++S
Sbjct: 2591 REGRPPEPTPAKRKRRSSSSSSSSSSSSSSSSS--------SSSSSSSSSSSSSSSSSSS 2642
Query: 143 SSSSTS 148
SSSS+S
Sbjct: 2643 SSSSSS 2648
Score = 29.6 bits (65), Expect = 8.6
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 86 GKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPPARAASPS 143
G+ P + + ++++SSSS S + S S + +SSS+ + S+ + ++SPS
Sbjct: 2593 GRPPEPTPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPS 2650
>gi|21264565 AT rich interactive domain 1A isoform a [Homo sapiens]
Length = 2285
Score = 55.5 bits (132), Expect = 1e-07
Identities = 113/464 (24%), Positives = 151/464 (32%), Gaps = 109/464 (23%)
Query: 221 AAAAAAA------AAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGG---SGD 271
AAAAAAA AAA S PA PP PL L G E GG GG SG
Sbjct: 39 AAAAAAAERGEMKAAAGQESEGPAVGPPQ--PLGKELQ----DGAESNGGGGGGGAGSGG 92
Query: 272 AFGAAAML--AKGSWPPHPAAPS----------GGRPRGAASPPDLASSPRCP------- 312
GA L + G+ P PA + GG G +PP A++ P
Sbjct: 93 GPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQ 152
Query: 313 ---REPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAAS--SCSSPAPCSPPESWGRQST 367
R P ++A A +V+ ++ G S AA + + P S +
Sbjct: 153 PYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQY 212
Query: 368 ASSFVDSSL-----SAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSM 422
S + + S A+AL +GG G A A + PP S
Sbjct: 213 NSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGS--KPPPSSSASASSSSSSFAQQR 270
Query: 423 TNLRGAEG----------------------SMRGARREPEEPEGAVAARAARGQGGRLPR 460
G G S AR P G + G G+ P
Sbjct: 271 FGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPA 330
Query: 461 T-------GRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPL--- 510
AA + SG R S P SPGS+ PLA+ PS P+
Sbjct: 331 DMASQCWGAAAAAAAAAAASGGAQQR---SHHAPMSPGSSGGGGQPLARTPQPSSPMDQM 387
Query: 511 -RLEGSPPTRRDSGSSQSDDPSSSNKGY----------TPLREAGTSTESVLDAVAGQTR 559
++ P + S Q PS +G+ TP R T A+ G +
Sbjct: 388 GKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSY 447
Query: 560 DSAVAAPVLGAE---------------QSSPEGASQEPPTAEQP 588
+ P G + Q SP Q+PP ++QP
Sbjct: 448 TQQI--PPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQP 489
Score = 49.7 bits (117), Expect = 8e-06
Identities = 94/399 (23%), Positives = 134/399 (33%), Gaps = 65/399 (16%)
Query: 220 AAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAML 279
AAAAA + SSS+SA +++ S+ Q R G GG G
Sbjct: 243 AAAAAGSKPPPSSSASASSSSS----------SFAQQRF-----GAMGGGG--------- 278
Query: 280 AKGSWPPHPAAPSGGRPRGAASPP--DLASSPRCPREPPSLAEAVYSVYRERSGV----- 332
P+A GG P+ A+P L +SP R YS + G
Sbjct: 279 --------PSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPA 330
Query: 333 --------AGSRRAAAATAAAAASSCSSPAPCSPPESWG------RQSTASSFVDSSLSA 378
A + AAAA A+ A S AP SP S G R SS +D +
Sbjct: 331 DMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQ-MGK 389
Query: 379 FALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARRE 438
P GG + +G Q+ G G + MT A+ +M G
Sbjct: 390 MRPQPY-GGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYT 448
Query: 439 PEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSS 498
+ P + GQ G+ P + + ++ P + PPS P P S
Sbjct: 449 QQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQP--PYSQQPPSQTPHAQPSYQQQPQS 506
Query: 499 PLAKAASPSPPLRLEGSPPTRRDSGS------SQSDDPSSSNKGYTPLREAGTSTESVLD 552
+ S PP + S P + S + S + S Y+ + +
Sbjct: 507 QPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQ 566
Query: 553 AVAGQTRDSAVAAPVLGAEQSSPEGASQE--PPTAEQPQ 589
A T A P ++QS SQ+ PP E Q
Sbjct: 567 QPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQ 605
Score = 30.4 bits (67), Expect = 5.1
Identities = 78/319 (24%), Positives = 107/319 (33%), Gaps = 94/319 (29%)
Query: 339 AAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDR---GGDAE 395
AA A AAASS +P P PP S +++ ++ A A + G + G ++E
Sbjct: 2 AAQVAPAAASSLGNPPP--PPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESE 59
Query: 396 GASCSWQRPPGER----------------GSQEIPRGELDLSMTNLR------------- 426
G + +P G+ GS P E DL +N
Sbjct: 60 GPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTE 119
Query: 427 ----GAEGSMRGARREPE--------------EPEG----AVAARAA----RGQGGRLPR 460
G GS G P +P G AVAA AA + GG+ +
Sbjct: 120 PPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQ--Q 177
Query: 461 TGRYAALRRRSTSGLPDYRAPP--------------------SPEPPPSPGSADPDSSPL 500
+ AAL+ GL Y P S PPP+P A SSP
Sbjct: 178 SPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYA--LSSP- 234
Query: 501 AKAASP-SPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTR 559
+ +P S GS P S S+ S S + + + + G S AG
Sbjct: 235 -RGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPS-------AAGGGT 286
Query: 560 DSAVAAPVLGAEQSSPEGA 578
A P L +SP A
Sbjct: 287 PQPTATPTLNQLLTSPSSA 305
>gi|21264575 AT rich interactive domain 1A isoform b [Homo sapiens]
Length = 2068
Score = 55.5 bits (132), Expect = 1e-07
Identities = 113/464 (24%), Positives = 151/464 (32%), Gaps = 109/464 (23%)
Query: 221 AAAAAAA------AAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGG---SGD 271
AAAAAAA AAA S PA PP PL L G E GG GG SG
Sbjct: 39 AAAAAAAERGEMKAAAGQESEGPAVGPPQ--PLGKELQ----DGAESNGGGGGGGAGSGG 92
Query: 272 AFGAAAML--AKGSWPPHPAAPS----------GGRPRGAASPPDLASSPRCP------- 312
GA L + G+ P PA + GG G +PP A++ P
Sbjct: 93 GPGAEPDLKNSNGNAGPRPALNNNLTEPPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQ 152
Query: 313 ---REPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAAS--SCSSPAPCSPPESWGRQST 367
R P ++A A +V+ ++ G S AA + + P S +
Sbjct: 153 PYGRSPSAVAAAAAAVFHQQHGGQQSPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQY 212
Query: 368 ASSFVDSSL-----SAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSM 422
S + + S A+AL +GG G A A + PP S
Sbjct: 213 NSYYPNRSAYPPPAPAYALSSPRGGTPGSGAAAAAGS--KPPPSSSASASSSSSSFAQQR 270
Query: 423 TNLRGAEG----------------------SMRGARREPEEPEGAVAARAARGQGGRLPR 460
G G S AR P G + G G+ P
Sbjct: 271 FGAMGGGGPSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPA 330
Query: 461 T-------GRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPL--- 510
AA + SG R S P SPGS+ PLA+ PS P+
Sbjct: 331 DMASQCWGAAAAAAAAAAASGGAQQR---SHHAPMSPGSSGGGGQPLARTPQPSSPMDQM 387
Query: 511 -RLEGSPPTRRDSGSSQSDDPSSSNKGY----------TPLREAGTSTESVLDAVAGQTR 559
++ P + S Q PS +G+ TP R T A+ G +
Sbjct: 388 GKMRPQPYGGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSY 447
Query: 560 DSAVAAPVLGAE---------------QSSPEGASQEPPTAEQP 588
+ P G + Q SP Q+PP ++QP
Sbjct: 448 TQQI--PPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQPPYSQQP 489
Score = 49.7 bits (117), Expect = 8e-06
Identities = 94/399 (23%), Positives = 134/399 (33%), Gaps = 65/399 (16%)
Query: 220 AAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAML 279
AAAAA + SSS+SA +++ S+ Q R G GG G
Sbjct: 243 AAAAAGSKPPPSSSASASSSSS----------SFAQQRF-----GAMGGGG--------- 278
Query: 280 AKGSWPPHPAAPSGGRPRGAASPP--DLASSPRCPREPPSLAEAVYSVYRERSGV----- 332
P+A GG P+ A+P L +SP R YS + G
Sbjct: 279 --------PSAAGGGTPQPTATPTLNQLLTSPSSARGYQGYPGGDYSGGPQDGGAGKGPA 330
Query: 333 --------AGSRRAAAATAAAAASSCSSPAPCSPPESWG------RQSTASSFVDSSLSA 378
A + AAAA A+ A S AP SP S G R SS +D +
Sbjct: 331 DMASQCWGAAAAAAAAAAASGGAQQRSHHAPMSPGSSGGGGQPLARTPQPSSPMDQ-MGK 389
Query: 379 FALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARRE 438
P GG + +G Q+ G G + MT A+ +M G
Sbjct: 390 MRPQPY-GGTNPYSQQQGPPSGPQQGHGYPGQPYGSQTPQRYPMTMQGRAQSAMGGLSYT 448
Query: 439 PEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSS 498
+ P + GQ G+ P + + ++ P + PPS P P S
Sbjct: 449 QQIPPYGQQGPSGYGQQGQTPYYNQQSPHPQQQQP--PYSQQPPSQTPHAQPSYQQQPQS 506
Query: 499 PLAKAASPSPPLRLEGSPPTRRDSGS------SQSDDPSSSNKGYTPLREAGTSTESVLD 552
+ S PP + S P + S + S + S Y+ + +
Sbjct: 507 QPPQLQSSQPPYSQQPSQPPHQQSPAPYPSQQSTTQQHPQSQPPYSQPQAQSPYQQQQPQ 566
Query: 553 AVAGQTRDSAVAAPVLGAEQSSPEGASQE--PPTAEQPQ 589
A T A P ++QS SQ+ PP E Q
Sbjct: 567 QPAPSTLSQQAAYPQPQSQQSQQTAYSQQRFPPPQELSQ 605
Score = 30.4 bits (67), Expect = 5.1
Identities = 78/319 (24%), Positives = 107/319 (33%), Gaps = 94/319 (29%)
Query: 339 AAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDR---GGDAE 395
AA A AAASS +P P PP S +++ ++ A A + G + G ++E
Sbjct: 2 AAQVAPAAASSLGNPPP--PPPSELKKAEQQQREEAGGEAAAAAAAERGEMKAAAGQESE 59
Query: 396 GASCSWQRPPGER----------------GSQEIPRGELDLSMTNLR------------- 426
G + +P G+ GS P E DL +N
Sbjct: 60 GPAVGPPQPLGKELQDGAESNGGGGGGGAGSGGGPGAEPDLKNSNGNAGPRPALNNNLTE 119
Query: 427 ----GAEGSMRGARREPE--------------EPEG----AVAARAA----RGQGGRLPR 460
G GS G P +P G AVAA AA + GG+ +
Sbjct: 120 PPGGGGGGSSDGVGAPPHSAAAALPPPAYGFGQPYGRSPSAVAAAAAAVFHQQHGGQ--Q 177
Query: 461 TGRYAALRRRSTSGLPDYRAPP--------------------SPEPPPSPGSADPDSSPL 500
+ AAL+ GL Y P S PPP+P A SSP
Sbjct: 178 SPGLAALQSGGGGGLEPYAGPQQNSHDHGFPNHQYNSYYPNRSAYPPPAPAYA--LSSP- 234
Query: 501 AKAASP-SPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTR 559
+ +P S GS P S S+ S S + + + + G S AG
Sbjct: 235 -RGGTPGSGAAAAAGSKPPPSSSASASSSSSSFAQQRFGAMGGGGPS-------AAGGGT 286
Query: 560 DSAVAAPVLGAEQSSPEGA 578
A P L +SP A
Sbjct: 287 PQPTATPTLNQLLTSPSSA 305
>gi|18702331 OTU domain containing 7A [Homo sapiens]
Length = 926
Score = 55.5 bits (132), Expect = 1e-07
Identities = 68/266 (25%), Positives = 103/266 (38%), Gaps = 31/266 (11%)
Query: 101 TANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPPARAASPSSSSTSVGFFFRIFSGYL 160
+AN + S R + + +GA ST P+ +PS + + G G
Sbjct: 548 SANGKNGDSAERGKEKKAKSRKGSKEESGASASTSPSEKTTPSPTDKAAGASPAEKGGGP 607
Query: 161 HSDKLKVFGPLIMGIGIFL--------FICANAVLHENRDKKTK------IINLRDLYST 206
D K + + + I FI A +L +R + + + + ++ +S
Sbjct: 608 RGDAWKYSTDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQFHEEMIGYYLTSAQERFSA 667
Query: 207 VIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGC 266
R +D A AAAAAAAAAA+++ P +P+ S L LK
Sbjct: 668 E---QEQRRRDAATAAAAAAAAAAATAKRPPRRPETEGVPVPERASPGPPTQLVLKLKER 724
Query: 267 GGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVY 326
G A G AA A G A+P GG R +AS P SP P ++V V
Sbjct: 725 PSPGPAAGRAARAAAGG----TASPGGGARRASASGPVPGRSPPAPAR-----QSVIHVQ 775
Query: 327 RERSGVAGSRRAAAATAAAAASSCSS 352
+G+R A A A A C++
Sbjct: 776 -----ASGARDEACAPAVGALRPCAT 796
Score = 40.4 bits (93), Expect = 0.005
Identities = 91/368 (24%), Positives = 129/368 (35%), Gaps = 67/368 (18%)
Query: 257 RGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPP 316
RG E K GS + GA+A + P PS ASP + PR
Sbjct: 559 RGKEKKAKSRKGSKEESGASASTS----PSEKTTPSPTDKAAGASPAEKGGGPRGDAWKY 614
Query: 317 SLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSL 376
S + S+ R+ + G R+ A + + ++ S+
Sbjct: 615 S-TDVKLSLNILRAAMQGERKFIFAGLLLTSHRHQF-----------HEEMIGYYLTSAQ 662
Query: 377 SAFALLPLQGGRDRG----GDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGS- 431
F+ Q RD A A+ + +RPP ++ +P E R + G
Sbjct: 663 ERFSAEQEQRRRDAATAAAAAAAAAAATAKRPPRRPETEGVPVPE--------RASPGPP 714
Query: 432 MRGARREPEEPE-GAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPP--- 487
+ + E P G A RAAR G G A RR S SG R+PP+P
Sbjct: 715 TQLVLKLKERPSPGPAAGRAARAAAGGTASPGGGA--RRASASGPVPGRSPPAPARQSVI 772
Query: 488 --PSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGT 545
+ G+ D +P A P + P + S SSQS P+ + LR T
Sbjct: 773 HVQASGARDEACAPAVGALRPC------ATYPQQNRSLSSQSYSPARA----AALRTVNT 822
Query: 546 STESVLDAVAGQTRDSAVAAPV-----------LGAEQSSPEGASQEPPTAEQ------- 587
ES+ AV G +A A GA + E A + PTA
Sbjct: 823 -VESLARAVPGALPGAAGTAGAAEHKSQTYTNGFGALRDGLEFADADAPTARSNGECGRG 881
Query: 588 -PQPVQRQ 594
P PVQR+
Sbjct: 882 GPGPVQRR 889
>gi|42542379 serine/arginine repetitive matrix 1 [Homo sapiens]
Length = 904
Score = 54.7 bits (130), Expect = 3e-07
Identities = 75/323 (23%), Positives = 115/323 (35%), Gaps = 28/323 (8%)
Query: 290 APSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASS 349
+PS PR P A+ P R P+ ++ + R V+ R + T
Sbjct: 389 SPSASPPRRRHRPSPPATPPPKTRHSPTPQQS-NRTRKSRVSVSPGRTSGKVTKHKGTEK 447
Query: 350 CSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERG 409
SP+P P + +A ++ + R + + S S ER
Sbjct: 448 RESPSPAPKPRKVELSESEEDKGGKMAAADSVQQRRQYRRQNQQSSSDSGSSSSSEDERP 507
Query: 410 SQE-IPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAAL- 467
+ + GE+ R R A P + + + R R + P T R +
Sbjct: 508 KRSHVKNGEV-----GRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPS 562
Query: 468 -----RRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGS----PPT 518
RRR T P R PSP P S S P+ + SPSPP + + PP
Sbjct: 563 PAPPPRRRRTPTPPPRRRTPSPPPRRRSPSPRRYSPPIQRRYSPSPPPKRRTASPPPPPK 622
Query: 519 RRDSGS-------SQSDDPSSSNKGYTPLREAGTSTESVL-DAVAGQTRDSAVAAPVLGA 570
RR S S S S P + T R S++ + + TR++ P
Sbjct: 623 RRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQP---N 679
Query: 571 EQSSPEGASQEPPTAEQPQPVQR 593
++ SP + P T+ P PV+R
Sbjct: 680 KRHSPSPRPRAPQTSSSPPPVRR 702
Score = 45.4 bits (106), Expect = 2e-04
Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 439 PEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSS 498
P++ V R + + + + R + S P+ R PSP P S+ P
Sbjct: 641 PKQRSSPVTKRRSPSLSSKHRKGSSPSRSTREARSPQPNKRHSPSPRPRAPQTSSSPP-- 698
Query: 499 PLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQT 558
P+ + AS SP R SP TR S++ +P K +P S +SV
Sbjct: 699 PVRRGASSSPQRRQSPSPSTRPIRRVSRTPEPKKIKKAASP------SPQSV-------- 744
Query: 559 RDSAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEKLIMISRS 607
R + + V G SPE A+++PP P Q TN + + ++
Sbjct: 745 RRVSSSRSVSG----SPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKA 789
Score = 42.0 bits (97), Expect = 0.002
Identities = 46/181 (25%), Positives = 64/181 (35%), Gaps = 24/181 (13%)
Query: 438 EPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAP---------------- 481
EP+EP ++ + + PR+ + R R+ S P + P
Sbjct: 255 EPKEPSPEKNSKKEKEKEKTRPRSRSRSKSRSRTRSRSPSHTRPRRRHRSRSRSYSPRRR 314
Query: 482 PSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLR 541
PSP PSP P P PP P RR SS S SSS+ + R
Sbjct: 315 PSPRRRPSPRRRTPPRR------MPPPPRHRRSRSPVRRRRRSSASLSGSSSSSSSSRSR 368
Query: 542 EAGTSTESVLDAVAGQTRD-SAVAAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEK 600
+ +TR S A+P + SP A+ P T P P Q T K +
Sbjct: 369 SPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPP-ATPPPKTRHSPTPQQSNRTRKSR 427
Query: 601 L 601
+
Sbjct: 428 V 428
Score = 42.0 bits (97), Expect = 0.002
Identities = 78/329 (23%), Positives = 106/329 (32%), Gaps = 76/329 (23%)
Query: 285 PPHPAAPSGGRPRGAAS---PPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAA 341
PP A P+ S PP SSP R PSL+ S +R+ S + S R A +
Sbjct: 620 PPKRRASPSPPPKRRVSHSPPPKQRSSPVTKRRSPSLS----SKHRKGSSPSRSTREARS 675
Query: 342 TAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSW 401
S SP P +P T+SS
Sbjct: 676 PQPNKRHS-PSPRPRAP-------QTSSS------------------------------- 696
Query: 402 QRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRT 461
PP RG+ P+ + S R RR PE +AA + R
Sbjct: 697 -PPPVRRGASSSPQRR--------QSPSPSTRPIRRVSRTPEPKKIKKAASPSPQSVRRV 747
Query: 462 GRYAALRRRSTSGLPDYRA-----PPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSP 516
RS SG P+ A PPSP SP + + P+ KA SP+P SP
Sbjct: 748 SS-----SRSVSGSPEPAAKKPPAPPSPVQSQSPSTNWSPAVPVKKAKSPTP----SPSP 798
Query: 517 PTRRDSGSSQSDDPSSSNKGYT-----PLREAGTSTESVLDAVAGQTRDSAVAAPVLGAE 571
P D +K + + ++V A A +A+AA
Sbjct: 799 PRNSDQEGGGKKKKKKKDKKHKKDKKHKKHKKHKKEKAVAAAAAAAVTPAAIAAATTTLA 858
Query: 572 QSSPEGASQEPPTAEQPQPVQRQFTNKEK 600
Q P A + P E + + EK
Sbjct: 859 QEEPVAAPE--PKKETESEAEDNLDDLEK 885
Score = 32.3 bits (72), Expect = 1.3
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Query: 102 ANSSSSGSKNRSRSHPRAPGGVNSSSAG-----APRSTPPARAASPSSSST 147
+ SSSS S +RSRS P+ P SS +P ++PP R PS +T
Sbjct: 356 SGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPPAT 406
Score = 31.2 bits (69), Expect = 3.0
Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 10/97 (10%)
Query: 460 RTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSA--------DPDSSPLAKAASPSPPLR 511
R R +A S+S R+ P+ PP S+ P +SP + PSPP
Sbjct: 347 RRRRSSASLSGSSSSSSSSRSRSPPKKPPKRTSSPPRKTRRLSPSASPPRRRHRPSPP-- 404
Query: 512 LEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTE 548
P TR QS+ S +P R +G T+
Sbjct: 405 ATPPPKTRHSPTPQQSNRTRKSRVSVSPGRTSGKVTK 441
>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
Length = 1464
Score = 54.3 bits (129), Expect = 3e-07
Identities = 84/323 (26%), Positives = 108/323 (33%), Gaps = 62/323 (19%)
Query: 241 PPGAIPLNGFLSYVQSRGLELKPGGCG-----GSGDAFGAAAM--LAKGSWPPHPAAPSG 293
PPGA G + + +G +PG G G A G A A PP PA P+G
Sbjct: 570 PPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAG 629
Query: 294 GRPR-------------GAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAA 340
R G A PP A P P L S R G G R
Sbjct: 630 ERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQ- 688
Query: 341 ATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCS 400
P P P + G + D+ G ++GA
Sbjct: 689 ----------GPPGPAGPRGANGAPGNDGAKGDA------------GAPGAPGSQGAP-G 725
Query: 401 WQRPPGERGSQEIPRGELDLSMTNLRGAEGS-----MRGARRE--PEEPEGAVAARAARG 453
Q PGERG+ +P + D +GA+GS +RG P P GA + G
Sbjct: 726 LQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESG 785
Query: 454 QGGRLPRTGRYAALRRRSTSGLP---DYRAPPSPEPPP----SPGSADP--DSSPLAKA- 503
G TG A R G P + PP + P PG A D+ P A
Sbjct: 786 PSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAG 845
Query: 504 -ASPSPPLRLEGSPPTRRDSGSS 525
A P P+ G+P + GS+
Sbjct: 846 PAGPPGPIGNVGAPGAKGARGSA 868
Score = 49.3 bits (116), Expect = 1e-05
Identities = 86/358 (24%), Positives = 117/358 (32%), Gaps = 40/358 (11%)
Query: 238 AAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPR 297
A PG + G + G PG G SG + A A+G+ P P P
Sbjct: 753 ADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGARGA-PGDRGEPGPPGPA 811
Query: 298 GAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCS 357
G A PP P EP + +G AG A A A
Sbjct: 812 GFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSA--G 869
Query: 358 PPESWGRQSTASSFVDSSLSAFALLP-------LQGGRDRGGDAEGASCSWQ----RPPG 406
PP + G A S A P +GG+ G+ A + PPG
Sbjct: 870 PPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGPPG 929
Query: 407 ERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAA 466
G + P + G +G + G R G V RG+ G G
Sbjct: 930 PAGEKGSPGADGPAGAPGTPGPQG-IAGQR-------GVVGLPGQRGERGFPGLPGPSGE 981
Query: 467 LRRRSTSGLPDYRAPPSPEPPPS----PGSADPDSSPLAKAASPSPPLRLEGSPPTRRDS 522
++ SG R PP P PP PG + + +P A+ SP +GSP + D
Sbjct: 982 PGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAE-GSPG----RDGSPGAKGDR 1036
Query: 523 GSSQSDDP---SSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEG 577
G + P + P+ AG S + G+T + A PV P G
Sbjct: 1037 GETGPAGPPGAPGAPGAPGPVGPAGKSGD------RGETGPAGPAGPVGPVGARGPAG 1088
Score = 45.8 bits (107), Expect = 1e-04
Identities = 90/390 (23%), Positives = 115/390 (29%), Gaps = 35/390 (8%)
Query: 221 AAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLA 280
A A A + P G+ G G KPG G GD A
Sbjct: 616 AGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGPSGA 675
Query: 281 KGS----------WPPHPAAPSG--GRP--------RGAASPPDLASSPRCPREPPSLAE 320
+G PP PA P G G P GA P +P P
Sbjct: 676 RGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGERGA 735
Query: 321 AVYSVYRERSGVAGSRRAAAATAAAAASSCSSP-APCSPPESWGRQSTASSFVDSSLSAF 379
A + G AG + A + + P P P + G + + + +
Sbjct: 736 AGLPGPKGDRGDAGPKGADGSPGKDGVRGLTGPIGPPGPAGAPGDKGESGPSGPAGPTGA 795
Query: 380 ALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARRE- 438
P DRG + PPG G D G G A
Sbjct: 796 RGAP----GDRGEPGPPGPAGFAGPPGADGQPGAKGEPGDAGAKGDAGPPGPAGPAGPPG 851
Query: 439 PEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPE-PPPSPGSADP-- 495
P GA A+ ARG G TG A R G PP P P G P
Sbjct: 852 PIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPSGNAGPPGPPGPAGKEGGKGPRG 911
Query: 496 DSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVA 555
++ P + PP G P + GS +D P+ + P AG L
Sbjct: 912 ETGPAGRPGEVGPP----GPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQRGVVGLPGQR 967
Query: 556 GQTRDSAVAAPVLGAEQSSPEGASQE--PP 583
G+ + P + P GAS E PP
Sbjct: 968 GERGFPGLPGPSGEPGKQGPSGASGERGPP 997
Score = 43.1 bits (100), Expect = 8e-04
Identities = 66/247 (26%), Positives = 77/247 (31%), Gaps = 44/247 (17%)
Query: 263 PGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAV 322
PG G G++ A A+GS P +P RG P +P P P + A
Sbjct: 1003 PGLAGPPGESGREGAPGAEGS-PGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPVGPAG 1061
Query: 323 YSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALL 382
S R +G AG A + P P G +
Sbjct: 1062 KSGDRGETGPAGP--------AGPVGPVGARGPAGPQGPRGDKGETGE------------ 1101
Query: 383 PLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEP 442
QG DRG Q PPG GS GE S GA G P P
Sbjct: 1102 --QG--DRGIKGHRGFSGLQGPPGPPGSP----GEQGPS-----GASGPAG-----PRGP 1143
Query: 443 EGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAK 502
G+ A G G G R +G PP P PP P SA D S L
Sbjct: 1144 PGSAGAPGKDGLNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFL-- 1201
Query: 503 AASPSPP 509
P PP
Sbjct: 1202 ---PQPP 1205
Score = 42.0 bits (97), Expect = 0.002
Identities = 87/337 (25%), Positives = 105/337 (31%), Gaps = 51/337 (15%)
Query: 241 PPGAIPLNGFLSYVQSRGLELK-------PGGCGGSGD--------AFGAAAMLAKGSWP 285
PPG L G + S G + K PG G SG A G P
Sbjct: 149 PPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPPGAPGPQGFQGPPGEP 208
Query: 286 PHPAAPSGGRPRGAASPPDL------ASSPRCPRE--PPSLAEAVYSVYRERSGVAGSRR 337
P A PRG PP A P P E PP A +G+ G +
Sbjct: 209 GEPGASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQGA--RGLPGTAGLPGMKG 266
Query: 338 AAAATAAAAASSCSSPA-PCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRD--RGGDA 394
+ A + PA P P S G L P G RG D
Sbjct: 267 HRGFSGLDGAKGDAGPAGPKGEPGSPGENGAPGQMGPRGLPGERGRPGAPGPAGARGNDG 326
Query: 395 EGASCSWQRPPGERGSQEIP-----RGELDLSMTNLRGAEGSMRGARREPEEPEGAVAAR 449
+ P G G P +GE RG+EG +G R EP P A AA
Sbjct: 327 ATGAAGPPGPTGPAGPPGFPGAVGAKGEA--GPQGPRGSEGP-QGVRGEPGPPGPAGAAG 383
Query: 450 AARGQG--GRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPS 507
A G G+ G A G P R P P+ P P P K S
Sbjct: 384 PAGNPGADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGP--------PGPKGNSGE 435
Query: 508 PPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAG 544
P G+P ++ D+G+ P P E G
Sbjct: 436 P-----GAPGSKGDTGAKGEPGPVGVQGPPGPAGEEG 467
Score = 33.9 bits (76), Expect = 0.46
Identities = 84/353 (23%), Positives = 104/353 (29%), Gaps = 47/353 (13%)
Query: 241 PPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAA 300
P GA L G +G G G GDA A GS P AP PRG
Sbjct: 249 PQGARGLPGTAGLPGMKGHRGFSGLDGAKGDAGPAGPKGEPGS-PGENGAPGQMGPRGL- 306
Query: 301 SPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPA-PCSPP 359
P P P G AG+R AT AA + PA P P
Sbjct: 307 --PGERGRPGAP------------------GPAGARGNDGATGAAGPPGPTGPAGPPGFP 346
Query: 360 ESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELD 419
+ G + A QG R G A + P G G+ P +
Sbjct: 347 GAVGAKGEAGPQGPRGSEG-----PQGVRGEPGPPGPAGAAG--PAGNPGADGQPGAKGA 399
Query: 420 LSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYR 479
+ GA G GAR P P+G +G G G + G +
Sbjct: 400 NGAPGIAGAPG-FPGARG-PSGPQGPGGPPGPKGNSGEPGAPGSKGDTGAKGEPGPVGVQ 457
Query: 480 APPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSG----------SSQSDD 529
PP P A + P P PP G P +R G + +
Sbjct: 458 GPPGPAGEEGKRGARGEPGP---TGLPGPPGE-RGGPGSRGFPGADGVAGPKGPAGERGS 513
Query: 530 PSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEP 582
P + +P EAG E+ L G T P P G P
Sbjct: 514 PGPAGPKGSP-GEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRP 565
Score = 33.5 bits (75), Expect = 0.60
Identities = 84/347 (24%), Positives = 113/347 (32%), Gaps = 32/347 (9%)
Query: 258 GLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPS 317
GL PG GG G A G P P+G RG+ P SP P
Sbjct: 479 GLPGPPGERGGPGSRGFPGADGVAG-----PKGPAG--ERGSPGPAGPKGSPGEAGRP-- 529
Query: 318 LAEAVYSVYRERSGVAGSRRAAAATAAAA-ASSCSSPAPCSPPESWGRQSTASSFVDSSL 376
EA + +G GS T A P P PP + G Q+ F
Sbjct: 530 -GEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARG-QAGVMGFPGPKG 587
Query: 377 SAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGS--MRG 434
+A P + G +RG + GE G+Q P +G GS +G
Sbjct: 588 AAGE--PGKAG-ERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQG 644
Query: 435 ARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSAD 494
P P G +G G L G A R G + PP P P A
Sbjct: 645 LPG-PAGPPGEAGKPGEQGVPGDLGAPGPSGARGERGFPGERGVQGPPGPAGPRGANGAP 703
Query: 495 PDSSPLAKAASPSPP-----LRLEGSPPTRRDSG--SSQSDDPSSSNKGY--TPLREA-- 543
+ A +P P L+G P R +G + D + KG +P ++
Sbjct: 704 GNDGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVR 763
Query: 544 GTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQP 590
G + AG D + P + + P GA P +P P
Sbjct: 764 GLTGPIGPPGPAGAPGDKGESGP---SGPAGPTGARGAPGDRGEPGP 807
Score = 29.6 bits (65), Expect = 8.6
Identities = 46/196 (23%), Positives = 60/196 (30%), Gaps = 37/196 (18%)
Query: 412 EIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRS 471
E+P GE + G+E E P+G R RG G R G
Sbjct: 85 EVPEGECCPVCPD--GSESPTDQETTGVEGPKGDTGPRGPRGPAGPPGRDG--------- 133
Query: 472 TSGLPDYRAPPSPEPPPSPGSADPDSSP---------------LAKAASPSPPLRLEGSP 516
G P PP P PP P + +P + PS P L G P
Sbjct: 134 IPGQPGLPGPPGPPGPPGPPGLGGNFAPQLSYGYDEKSTGGISVPGPMGPSGPRGLPGPP 193
Query: 517 ----PTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQ 572
P + +P +S P G ++ D AG+ P
Sbjct: 194 GAPGPQGFQGPPGEPGEPGASGP-MGPRGPPGPPGKNGDDGEAGKPGRPGERGP------ 246
Query: 573 SSPEGASQEPPTAEQP 588
P+GA P TA P
Sbjct: 247 PGPQGARGLPGTAGLP 262
>gi|239757130 PREDICTED: hypothetical protein FLJ22184 [Homo
sapiens]
Length = 855
Score = 54.3 bits (129), Expect = 3e-07
Identities = 100/424 (23%), Positives = 150/424 (35%), Gaps = 67/424 (15%)
Query: 220 AAAAAAAAAAASSSSSAPAAAPPG------AIPLN----GFLSYVQSRGLELKPGGCGGS 269
+A A +A +SS PA+ PP A P G +S +PG G
Sbjct: 73 SAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTTRPGPLGQK 132
Query: 270 GDAFGAAAMLAKG--SWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAV----- 322
G A +A+G + P +A S G R + P SP R + V
Sbjct: 133 GLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAGTEVGLPRP 192
Query: 323 YSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALL 382
R R G R++ ++ + + + S A P G Q AS + SS + +
Sbjct: 193 APSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSSSATPLSSP 252
Query: 383 PLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEP 442
G RG A S +P +G Q + ++ + A G + + P
Sbjct: 253 ARSGPSARGTPRAPAHPSQPKP---KGLQALRPPQVTPPRKDAAPALGPLSSSPLATPSP 309
Query: 443 EGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPS------PGSADPD 496
A+ ++A LP T ++L + + LP APPSP PPS P + P
Sbjct: 310 SAALQSQAPP----TLPATPHSSSLTCQLATPLP--LAPPSPSAPPSLQTLPSPPATPPS 363
Query: 497 -------------------SSPLAKAASPSP---------PLRLEGSPPTRRDSGSSQSD 528
S PL+ A+P P PL+ SPP +
Sbjct: 364 QATTSLGSPTLQATHSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSPLATP 423
Query: 529 DPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQP 588
P + N L +A S + Q S A+P + + P SQ PP+ P
Sbjct: 424 SPQAPNALAVHLLQAPFSPP---PSPPVQAPFSPPASPPVSPSATPP---SQAPPSLAAP 477
Query: 589 QPVQ 592
P+Q
Sbjct: 478 -PLQ 480
Score = 52.8 bits (125), Expect = 1e-06
Identities = 106/427 (24%), Positives = 150/427 (35%), Gaps = 58/427 (13%)
Query: 216 KDLAAAAAAAAAAAASS----------SSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGG 265
+D A A AAA AA + S P P A+ + G V + L + GG
Sbjct: 5 RDKAKAGAAARTPAARAPGLLTPRPPGSPRPPPPVTPAALRVLGAAGAVGRKPLAERAGG 64
Query: 266 CGGS---GDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSP---------RCPR 313
GG+ A A + G+ +PA+ RG +PP +SP
Sbjct: 65 IGGATIPESAPRAGPTRSAGTSSRNPASRPPASGRGERAPPAKNTSPGPVSSPGRASGTT 124
Query: 314 EPPSLAEAVYSVYRERSGVAGSRRAA---AATAAAAASSCSSPAPCSPPESWGRQSTAS- 369
P L + + E + G A +A +A A S P P +P + R+S A+
Sbjct: 125 RPGPLGQKGLRISAEETVARGKATEAPKRSALSAGARRDTSGPTPGTPSPAMARRSRAAG 184
Query: 370 ---SFVDSSLSAFALLPLQGGRDRGGDA------EGASCSWQRPPGERGSQEIPRGELDL 420
+ SA P +G R A E + + +RP G Q L
Sbjct: 185 TEVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPASRSLSS 244
Query: 421 SMTNLRG---AEGSMRGARREPEEPE--GAVAARAARGQGGRLPRTGRYAALRRRSTSGL 475
S T L + S RG R P P +A R PR AL S+S L
Sbjct: 245 SATPLSSPARSGPSARGTPRAPAHPSQPKPKGLQALRPPQVTPPRKDAAPALGPLSSSPL 304
Query: 476 --PDYRAPPSPEPPPSPGSADPDSSPLAKAASP---SPPLRLEGSPPTRRDSGSSQSDDP 530
P A + PP+ + SS + A+P +PP +PP+ + S + P
Sbjct: 305 ATPSPSAALQSQAPPTLPATPHSSSLTCQLATPLPLAPP--SPSAPPSLQTLPSPPATPP 362
Query: 531 SSSNKGY-TPLREAGTSTESVLD-------AVAGQTRDSAVAAPVLGAEQSSPEGASQEP 582
S + +P +A T S L A A+A P L A S P P
Sbjct: 363 SQATTSLGSPTLQA---THSFLPSPPLSPLATPPPQAPPALALPPLQAPPSPPASPPLSP 419
Query: 583 PTAEQPQ 589
PQ
Sbjct: 420 LATPSPQ 426
Score = 40.8 bits (94), Expect = 0.004
Identities = 132/556 (23%), Positives = 190/556 (34%), Gaps = 86/556 (15%)
Query: 77 KATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTPP 136
+A GT E G P + R PT S S + + +P SAG P
Sbjct: 181 RAAGT--EVGLPRPAPSARPRPPTEGPRKSVSSASEHSTTEPSPAARRRPSAGGGLQRPA 238
Query: 137 ARAASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLFICANAVLHENRDKKTK 196
+R S SSS+T + R GP G A H ++ K
Sbjct: 239 SR--SLSSSATPLSSPARS-------------GPSARGT-------PRAPAHPSQPKPKG 276
Query: 197 IINLRDLYSTVIDVHSLRAKD-LAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQ 255
+ LR T + A L+++ A + +A+ S AP P A P + L+
Sbjct: 277 LQALRPPQVTPPRKDAAPALGPLSSSPLATPSPSAALQSQAPPTLP--ATPHSSSLTCQL 334
Query: 256 SRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAA------SPP--DLAS 307
+ L L P + + + PP A S G P A SPP LA+
Sbjct: 335 ATPLPLAPPSPSAPPSL---QTLPSPPATPPSQATTSLGSPTLQATHSFLPSPPLSPLAT 391
Query: 308 SPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSS----PAPCSPPESWG 363
P P+ PP+LA + + S A + AT + A + + AP SPP S
Sbjct: 392 PP--PQAPPALA--LPPLQAPPSPPASPPLSPLATPSPQAPNALAVHLLQAPFSPPPSPP 447
Query: 364 RQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMT 423
Q+ S +S A P Q A+ Q PP S +
Sbjct: 448 VQAPFSPPASPPVSPSATPPSQAPPSL------AAPPLQVPPSPPASPPMSPSATPPPQA 501
Query: 424 NLRGAEGSMRGARREPEEPEGAVAA--RAARGQGGRLPRTGRYAALRRRSTSGL--PDYR 479
A ++ A+ P+ P +A P ++ S L P +
Sbjct: 502 PPPLAAPPLQLAKPPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQ 561
Query: 480 APP--------------------SPEPPPSPGSADPDSSP-LAKAASPSPPLRLEGSPPT 518
APP +P PP+PG S P L A +P PP PP+
Sbjct: 562 APPVLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPP-----PPPS 616
Query: 519 RRDSGSSQSDDPS--SSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAA--PVLGAEQSS 574
R S + D + SS+ TP G + A A D+ +AA P + +
Sbjct: 617 RSPSSTLSGPDLAGHSSSATSTPEELRGYDSGPEGGAAASPPPDAELAACHPAAWSRGPA 676
Query: 575 PEGASQEPPTAEQPQP 590
P A + P A P P
Sbjct: 677 PPLAFRGAPGAPLPWP 692
Score = 37.7 bits (86), Expect = 0.032
Identities = 92/360 (25%), Positives = 121/360 (33%), Gaps = 78/360 (21%)
Query: 275 AAAMLAKGSWPPHPAAPSGGRP------RGAASPPDLASSPRCPREPPSLAEAVYSVYRE 328
A+ ++ + PP A PS P ASPP S+ P+ PP LA + +
Sbjct: 456 ASPPVSPSATPPSQAPPSLAAPPLQVPPSPPASPPMSPSATPPPQAPPPLAAPPLQLAK- 514
Query: 329 RSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGR 388
A A ++ A SPP S+ Q+ S +S A P Q
Sbjct: 515 ----------PPPQAPPALATPPLQALPSPPASFPGQAPFSPSASLPMSPLATPPPQAPP 564
Query: 389 DRGG------DAEGASCSWQRP-----PGERGSQEIPRGELDLS-----------MTNLR 426
+ AS + Q P PG S PR L L+ + L
Sbjct: 565 VLAAPLLQVPPSPPASPTLQAPRRPPTPGPDTSVSGPRLTLALAPGPPPPPSRSPSSTLS 624
Query: 427 GAE--GSMRGARREPEE-------PEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLP- 476
G + G A PEE PEG AA P AA + S P
Sbjct: 625 GPDLAGHSSSATSTPEELRGYDSGPEGGAAASP--------PPDAELAACHPAAWSRGPA 676
Query: 477 ---DYR-APPSPEP-PPS--PGSAD----------PDS-SPLAKAASPSPPLRLEGSPPT 518
+R AP +P P PP+ PGSAD P+S +P A P P G
Sbjct: 677 PPLAFRGAPGAPLPWPPATGPGSADGLCTIYETEGPESATPAPGALDPGPSPGTSGGKAA 736
Query: 519 RRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGA 578
+ S P + G PL G SV+ + +T A A G P GA
Sbjct: 737 AGAGAGASSRSPKQARLGELPL---GALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGA 793
Score = 30.8 bits (68), Expect = 3.9
Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 224 AAAAAAASSSSSAPAAAPPGAIPLNGF----LSYVQSRGLEL--KPGGCGGSGDAFGAA 276
AAA A A +SS +P A G +PL + ++ SR L L G GGSG G A
Sbjct: 735 AAAGAGAGASSRSPKQARLGELPLGALQASVVQHLLSRTLLLAAAEGAAGGSGGGPGGA 793
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 53.1 bits (126), Expect = 7e-07
Identities = 87/379 (22%), Positives = 114/379 (30%), Gaps = 37/379 (9%)
Query: 241 PPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPR-GA 299
PPG + L G PG G G+ M G PP P PSG G
Sbjct: 1223 PPGPVGLQGL------------PGPPGEKGETGDVGQMGPPG--PPGPRGPSGAPGADGP 1268
Query: 300 ASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSP-APCSP 358
PP +P E EA G G + + S + P P P
Sbjct: 1269 QGPPGGIGNPGAVGEKGEPGEAGEPGLPGEGGPPGPKGERGEKGESGPSGAAGPPGPKGP 1328
Query: 359 PESWGRQSTASSFVDSSLSAFALLPLQGGRD-----RGGDAEGASCSWQRPPGERGSQEI 413
P G + + P G+D +G D E P GE G
Sbjct: 1329 PGDDGPKGSPGPVGFPGDPGPPGEPGPAGQDGPPGDKGDDGEPGQTGSPGPTGEPGPSGP 1388
Query: 414 PRGELDLSMTNLRGAEGSMRGARRE-----PEEPEGAVAARAARGQGGRLPRTGRYAALR 468
P G +G +GA+ E P G + + A G+ G G +
Sbjct: 1389 PGKRGPPGPAGPEGRQGE-KGAKGEAGLEGPPGKTGPIGPQGAPGKPGPDGLRGIPGPVG 1447
Query: 469 RRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSD 528
+ G P PP P PP DS P + P + L G P + + G
Sbjct: 1448 EQGLPGSPGPDGPPGPMGPPGLPGLKGDSGPKGEKGHPG-LIGLIGPPGEQGEKGDRGLP 1506
Query: 529 DPSSSN-----KGYT----PLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGAS 579
P S+ +G T P+ G G S P A P G
Sbjct: 1507 GPQGSSGPKGEQGITGPSGPIGPPGPPGLPGPPGPKGAKGSSGPTGPKGEAGHPGPPGPP 1566
Query: 580 QEPPTAEQPQPVQRQFTNK 598
P QP P+Q T +
Sbjct: 1567 GPPGEVIQPLPIQASRTRR 1585
Score = 38.1 bits (87), Expect = 0.024
Identities = 82/380 (21%), Positives = 108/380 (28%), Gaps = 56/380 (14%)
Query: 241 PPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSW-PPHPAAPSG-GRPRG 298
P GAI G + GL PG G G KG PP P P G PRG
Sbjct: 734 PQGAIGPPGEKGPLGKPGLPGMPGADGPPGHPGKEGPPGEKGGQGPPGPQGPIGYPGPRG 793
Query: 299 AASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSP----- 353
+ E E + ++ G+ G R P
Sbjct: 794 VKGADGIRGLKGTKGEK---GEDGFPGFKGDMGIKGDRGEIGPPGPRGEDGPEGPKGRGG 850
Query: 354 -----APCSPPESWG------------RQSTASSFVDSSLSAFALLPLQGGRDRGGDAEG 396
P PP G RQ S F P G G G
Sbjct: 851 PNGDPGPLGPPGEKGKLGVPGLPGYPGRQGPKGSI------GFPGFPGANGEKGGRGTPG 904
Query: 397 ASCSWQRPPGERGSQEIPRGELD-LSMTNLRGAEGSMRG-------ARREPEEPEGAVAA 448
P G+RG PRGE +T G +G+ G R P P+G
Sbjct: 905 KP----GPRGQRGPTG-PRGERGPRGITGKPGPKGNSGGDGPAGPPGERGPNGPQGPTGF 959
Query: 449 RAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSP 508
+G G + G +R +G PP P P ++ P+ + P P
Sbjct: 960 PGPKGPPGPPGKDGLPGHPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGP 1019
Query: 509 PLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVL 568
P PP + + + + G AG + + G D + PV
Sbjct: 1020 P-----GPPGEQGLPGLAGKEGTKGDPG-----PAGLPGKDGPPGLRGFPGDRGLPGPVG 1069
Query: 569 GAEQSSPEGASQEPPTAEQP 588
EG P A P
Sbjct: 1070 ALGLKGNEGPPGPPGPAGSP 1089
Score = 35.8 bits (81), Expect = 0.12
Identities = 89/391 (22%), Positives = 120/391 (30%), Gaps = 65/391 (16%)
Query: 234 SSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGD-AFGAAAMLAKGSWPPHPAAPS 292
+S+P+ PG +P N Y G+ G G G+ A ML +G PP P P+
Sbjct: 424 TSSPSEIGPG-MPANQDTIY---EGIGGPRGEKGQKGEPAIIEPGMLIEG--PPGPEGPA 477
Query: 293 G--------------GRP--RGAASPPDLASSPRCPREPPSL----------------AE 320
G G P RG P L + P P ++
Sbjct: 478 GLPGPPGTMGPTGQVGDPGERGPPGRPGLPGADGLPGPPGTMLMLPFRFGGGGDAGSKGP 537
Query: 321 AVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFA 380
V + + + R A A P P PP S G +
Sbjct: 538 MVSAQESQAQAILQQARLALRGPAGPMGLTGRPGPVGPPGSGGLKGEPGDVGPQGPRGVQ 597
Query: 381 LLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPE 440
P G+ G S + PG+ G P+G D L G G +G R +P
Sbjct: 598 GPPGPAGKP-GRRGRAGSDGARGMPGQTG----PKG--DRGFDGLAGLPGE-KGHRGDPG 649
Query: 441 EPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSP- 499
P G G+ G G GL + PP P PP D P
Sbjct: 650 -PSGPPGPPGDDGERGDDGEVGPRGLPGEPGPRGLLGPKGPPGPPGPPGVTGMDGQPGPK 708
Query: 500 --LAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQ 557
+ P PP + +G+P + G + P KG PL + G D G
Sbjct: 709 GNVGPQGEPGPPGQ-QGNPGAQGLPGPQGAIGP-PGEKG--PLGKPGLPGMPGADGPPGH 764
Query: 558 TRDSAVAAPVLGAEQSSPEGASQEPPTAEQP 588
G E E Q PP + P
Sbjct: 765 P----------GKEGPPGEKGGQGPPGPQGP 785
Score = 34.3 bits (77), Expect = 0.35
Identities = 68/306 (22%), Positives = 93/306 (30%), Gaps = 83/306 (27%)
Query: 239 AAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGR--- 295
A PG G + RGL PG G G L PP P P+G
Sbjct: 1044 AGLPGKDGPPGLRGFPGDRGL---PGPVGALG--------LKGNEGPPGPPGPAGSPGER 1092
Query: 296 -PRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPA 354
P GAA P + P P+ PP A + G G + A PA
Sbjct: 1093 GPAGAAGPIGIPGRPG-PQGPPGPAGE-----KGAPGEKGPQGPAGRDGLQGPVGLPGPA 1146
Query: 355 -PCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEI 413
P PP G D+G E PG++GS+
Sbjct: 1147 GPVGPPGEDG-------------------------DKGEIGE---------PGQKGSKG- 1171
Query: 414 PRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTS 473
+GE +G G P P+G + G G G+ ++
Sbjct: 1172 DKGE--------QGPPG--------PTGPQGPIGQPGPSGADGEPGPRGQQGLFGQKGDE 1215
Query: 474 GLPDYRAPPSP---EPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDP 530
G + PP P + P P ++ + + P P P R SG+ +D P
Sbjct: 1216 GPRGFPGPPGPVGLQGLPGPPGEKGETGDVGQMGPPGP-------PGPRGPSGAPGADGP 1268
Query: 531 SSSNKG 536
G
Sbjct: 1269 QGPPGG 1274
>gi|110556636 tankyrase 1-binding protein 1 [Homo sapiens]
Length = 1729
Score = 53.1 bits (126), Expect = 7e-07
Identities = 95/397 (23%), Positives = 147/397 (37%), Gaps = 67/397 (16%)
Query: 217 DLAAAAAAAAAAAASS----SSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDA 272
DLA AA++ A S SS AP++ G S GL P GSG
Sbjct: 254 DLAKAASSELPADISKPWIPSSPAPSSENGGPA----------SPGL---PAEASGSGPG 300
Query: 273 FGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGV 332
+ PP ++P + A +P +SP CP PS A
Sbjct: 301 -------SPHLHPPDKSSPCHSQLLEAQTPEASQASP-CPAVTPSAPSAALPD------- 345
Query: 333 AGSRRAAAATAAAAASSCSSPAPCSPP----ESWGRQSTASSFVDSSLSAFALLPLQGGR 388
GSR + A + +P P SPP E ++ + LL L
Sbjct: 346 EGSRHTPSPGLPAEGAP-EAPRPSSPPPEVLEPHSLDQPPATSPRPLIEVGELLDLTRTF 404
Query: 389 DRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAA 448
GG+ E + RP S+ R +EG ++ ++ E+ G++AA
Sbjct: 405 PSGGEEEAKGDAHLRPT---------------SLVQRRFSEGVLQSPSQDQEKLGGSLAA 449
Query: 449 RAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPE---------PPPSPGSADPDSSP 499
+GQG +L + A S S ++ P P PPPSP + +++
Sbjct: 450 -LPQGQGSQLALDRPFGAESNWSLSQSFEWTFPTRPSGLGVWRLDSPPPSPITEASEAAE 508
Query: 500 LAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTP----LREAGTSTESVLDAVA 555
A+A + + R EG + +GS+ S SS +G P ++ ++ AV
Sbjct: 509 AAEAGNLAVSSREEGVSQQGQGAGSAPSGSGSSWVQGDDPSMSLTQKGDGESQPQFPAVP 568
Query: 556 GQTRDSAVAAPVLGAEQSSPEGASQEPPTA-EQPQPV 591
+ + P L +Q+ SQEP E P P+
Sbjct: 569 LEPLPTTEGTPGLPLQQAEERYESQEPLAGQESPLPL 605
Score = 39.3 bits (90), Expect = 0.011
Identities = 68/258 (26%), Positives = 90/258 (34%), Gaps = 33/258 (12%)
Query: 225 AAAAAASSSSSAPAAAPPGAIPLNGFLSY-VQSRG-LELKPGGCGGSGDAFGAAAMLAKG 282
A + A + P + NG LS +++R LE + G G + +
Sbjct: 1358 APSEAREHGVGGVSQCPEPGLRHNGSLSPGLEARDPLEARELGVGETSGPETQGEDYSSS 1417
Query: 283 SWPPHPAAPSGGRPRGAASPPDLASSPRCPREPP--------------SLAEAVYSVYRE 328
S PHPA P G G A AS RCP PP S ++AV
Sbjct: 1418 SLEPHPADP--GMETGEALSFG-ASPGRCPARPPPSGSQGLLEEMLAASSSKAVARRESA 1474
Query: 329 RSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQ----STASSFVDSSLSAFALLPL 384
SG+ G A A AA P SPP SW Q ++ + VD + + A
Sbjct: 1475 ASGLGGLLEEEGAGAGAAQEEVLEPGRDSPP-SWRPQPDGEASQTEDVDGTWGSSA---- 1529
Query: 385 QGGRDRGGDAEGASCSWQRPPGERGSQEIPRGE----LDLSMTNLRGAEGSMRGARREPE 440
G A+ + Q PP SQ+ E LD +M R G RG R
Sbjct: 1530 -ARWSDQGPAQTSRRPSQGPPARSPSQDFSFIEDTEILDSAMYRSRANLGRKRGHRAPVI 1588
Query: 441 EPEGAVAARAARGQGGRL 458
P G + A L
Sbjct: 1589 RPGGTLGLSEAADSDAHL 1606
>gi|102469037 jun D proto-oncogene [Homo sapiens]
Length = 347
Score = 52.8 bits (125), Expect = 1e-06
Identities = 41/117 (35%), Positives = 51/117 (43%), Gaps = 11/117 (9%)
Query: 209 DVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAI-PLNGFLSYVQSRGLELKPGGCG 267
D+H AAAAAAAAAA S +A +APPG + P L GG G
Sbjct: 146 DLHKQNQLGAGAAAAAAAAAAGGPSGTATGSAPPGELAPAAAAPEAPVYANLSSYAGGAG 205
Query: 268 GSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLAS---SPRCPREPPSLAEA 321
G+G A A +PP P P GA PP LA+ P+ + PS E+
Sbjct: 206 GAGGAATVAFAAEPVPFPPPP-------PPGALGPPRLAALKDEPQTVPDVPSFGES 255
Score = 34.3 bits (77), Expect = 0.35
Identities = 31/92 (33%), Positives = 37/92 (40%), Gaps = 20/92 (21%)
Query: 268 GSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYR 327
G+G A AAA A G PSG G+A P +LA + P P VY
Sbjct: 154 GAGAAAAAAAAAAGG--------PSG-TATGSAPPGELAPAAAAPEAP---------VYA 195
Query: 328 ERSGVAGSRRAAAATAAAAASSCSSPAPCSPP 359
S AG A A AA + + P P PP
Sbjct: 196 NLSSYAGG--AGGAGGAATVAFAAEPVPFPPP 225
>gi|163965366 nascent polypeptide-associated complex alpha subunit
isoform a [Homo sapiens]
Length = 2078
Score = 52.8 bits (125), Expect = 1e-06
Identities = 80/355 (22%), Positives = 120/355 (33%), Gaps = 44/355 (12%)
Query: 226 AAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGC-----GGSGDAFGAAAMLA 280
A + + + PAA PP G L+ +G P GG A
Sbjct: 1187 ATPSPKGAPTTPAATPPSP---KGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTT 1243
Query: 281 KGSWPPHP-AAPSGGRPRGA-----ASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAG 334
+ PP P P+ P+GA A+PP L P + AV + + G A
Sbjct: 1244 PAATPPSPKGGPATPPPKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPAT 1303
Query: 335 SRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDA 394
S A T AA +P +PP T + S LP +GG
Sbjct: 1304 SPPKGAPTPPAATPPSPKGSPGTPPPKGA--PTPPAVTPPSPKGTPTLPATTPSSKGGPT 1361
Query: 395 EGASCSWQRPPGERGSQE------IPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAA 448
+S PP S + P + ++ + +G S P++
Sbjct: 1362 TPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVT 1421
Query: 449 R---AARGQGGRLPRTGRYAALRRR-------------STSGLPDYRA--PPSPEPPPSP 490
R A +G P +L++ S+ G P A PPSP+ PP+P
Sbjct: 1422 REGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAP 1481
Query: 491 GSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGT 545
SSP A+P+P G+P SS + P++ + P+ T
Sbjct: 1482 KQVATSSSPKKAPATPAP----MGAPTLPAVIPSSPKEVPATPSSRRDPIAPTAT 1532
Score = 50.4 bits (119), Expect = 5e-06
Identities = 91/398 (22%), Positives = 133/398 (33%), Gaps = 61/398 (15%)
Query: 219 AAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAM 278
A A A + +SS A A P IP + + P GG A
Sbjct: 904 APKQAPALSMTSSSPKKARATPAPKGIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAP 963
Query: 279 LAKGSWPPHP-AAPSGGRPRGAASPPDLASSPRCPREPPSLAE--------AVYSVYRER 329
+ PP P P+ P+GA +PP A++P P+ P+ AV +
Sbjct: 964 TPPAATPPSPKGGPATPSPKGAPTPP--AATPPSPKGGPATPSPKGAPTPPAVTPPSPKG 1021
Query: 330 SGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGG-- 387
S A A+T AA +P + P G +T ++ + S A L+G
Sbjct: 1022 SPAATPFPKGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPT 1081
Query: 388 -------RDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPE 440
+GG A + PP + P+G L +G+ P
Sbjct: 1082 PPAATPPSPKGGPATPSPKGAPMPPA--ATPPSPKGGLATPPH-----KGAPTTPAATPP 1134
Query: 441 EPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGL---PDYRAPPSPEP-PPSP----GS 492
P+G +A +G P T AA GL P AP +P PPSP +
Sbjct: 1135 SPKGGLATPPPKGA----PTTP--AATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLAT 1188
Query: 493 ADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLD 552
P +P AA+P P +P + + + PS TP + +T +
Sbjct: 1189 PSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPA--- 1245
Query: 553 AVAGQTRDSAVAAPVLGAEQSSPEGASQEPPTAEQPQP 590
A SP+G PP P P
Sbjct: 1246 -----------------ATPPSPKGGPATPPPKGAPTP 1266
Score = 43.5 bits (101), Expect = 6e-04
Identities = 96/413 (23%), Positives = 140/413 (33%), Gaps = 56/413 (13%)
Query: 225 AAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSW 284
AA +S+ PAA PP P + +G P S A L
Sbjct: 1024 AATPFPKGASTPPAATPPS--PKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPT 1081
Query: 285 PPH--PAAPSGG----RPRGAASPPDLASSPRCPR----EPPSLAEAVYSVYRERS---G 331
PP P +P GG P+GA PP A++P P+ PP S G
Sbjct: 1082 PPAATPPSPKGGPATPSPKGAPMPP--AATPPSPKGGLATPPHKGAPTTPAATPPSPKGG 1139
Query: 332 VA-----GSRRAAAATAAAAASSCSSPAP--------CSPPESWGRQSTASSFVDSSLSA 378
+A G+ AAT + ++P P +PP G +T S + A
Sbjct: 1140 LATPPPKGAPTTPAATPPSPKGGLATPPPKGAPTTPAATPPSPKGGLATPSPKGAPTTPA 1199
Query: 379 FALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARRE 438
+GG + PP +G P + + T S +G
Sbjct: 1200 ATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKG--APTTPAATPPSPKGGPAT 1257
Query: 439 PEEPEGAVAARAA-----RGQGGRLPRTG--RYAALRRRSTSGLPDYRAP-----PSPEP 486
P P+GA AA +G P G A + S G P P P
Sbjct: 1258 PP-PKGAPTPPAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAAT 1316
Query: 487 PPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTS 546
PPSP P + P +P+PP +PP+ + + + + PSS TP + G +
Sbjct: 1317 PPSP-KGSPGTPP--PKGAPTPP---AVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPT 1370
Query: 547 TESVLDAVAG---QTRDSAVAAPVLGAEQSSPEGASQEP--PTAEQPQPVQRQ 594
+ + G T S P + + + P + P P PV R+
Sbjct: 1371 PPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPATPVTRE 1423
Score = 40.0 bits (92), Expect = 0.006
Identities = 70/319 (21%), Positives = 114/319 (35%), Gaps = 61/319 (19%)
Query: 286 PHPAAPSGG--RPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATA 343
P +AP GG P P A +P P+EPP+ + S + ++A A A
Sbjct: 1447 PATSAPKGGPATPSSKGDPTLPAVTPPSPKEPPAPKQVATS--------SSPKKAPATPA 1498
Query: 344 AAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQR 403
A + + P SP E +P R A A+ ++
Sbjct: 1499 PMGAPTLPAVIPSSPKE---------------------VPATPSSRRDPIAPTATLLSKK 1537
Query: 404 PPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGR 463
P +E L + A P+E +++ A P T +
Sbjct: 1538 TPATLAPKEA------LIPPAMTVPSPKKTPAIPTPKEAPATPSSKEASSPPAVTPSTYK 1591
Query: 464 YAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSG 523
A + +P PSP+ P+P + P SP A+P+P +G+P + +
Sbjct: 1592 GAPSPKELL--IPPAVTSPSPKEAPTPPAVTP-PSPEKGPATPAP----KGTPTSPPVTP 1644
Query: 524 SSQSDDPSS--------------SNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLG 569
SS D P+S ++KG P ++ T+ + VL A A ++ + AP
Sbjct: 1645 SSLKDSPTSPASVTCKMGATVPQASKG-LPAKKGPTALKEVLVAPAPES-TPIITAPTRK 1702
Query: 570 AEQSSPEGASQEPPTAEQP 588
Q+ A+ PP P
Sbjct: 1703 GPQTKKSSAT-SPPICPDP 1720
Score = 37.0 bits (84), Expect = 0.054
Identities = 47/166 (28%), Positives = 63/166 (37%), Gaps = 33/166 (19%)
Query: 439 PEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSS 498
P E GA A +++G T Y A S S L +P + PP GSA PD +
Sbjct: 771 PTEDSGASATASSKG-------TLTYLA---DSPSPLGVSVSPQTKRPPTKKGSAGPD-T 819
Query: 499 PLAKAASPSPPLRLEGSPPT------RRDSGSSQSDDPSSSNKG------YTPLREAG-- 544
P+ +SP P+ P +DS ++ S KG TPL G
Sbjct: 820 PIGNLSSPVSPVEASFLPENSLSFQGSKDSPATTHSPTPPSPKGAPTPSAVTPLSPKGVT 879
Query: 545 -----TSTESVLD---AVAGQTRDSAVAAPVLGAEQSSPEGASQEP 582
T T SV++ G + AP L SSP+ A P
Sbjct: 880 LPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKARATP 925
Score = 36.6 bits (83), Expect = 0.071
Identities = 120/578 (20%), Positives = 188/578 (32%), Gaps = 94/578 (16%)
Query: 76 PKAT-GTNREGGKQLPPAGS------SHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSA 128
PK + GT G PPA + + +P T SS G S P S
Sbjct: 1320 PKGSPGTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGPTPPAATPSHK 1379
Query: 129 GAPRSTPPARAASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFLFICANAVLH 188
G P TPP+ P+ + S K P ++ + A V
Sbjct: 1380 GGPAMTPPSPKRGPA----------------IPSPKGDPTSPAVIPLSP-KKAPATPVTR 1422
Query: 189 ENRDKKTKIINLRDLYSTVIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLN 248
E +K DL A + + ++SAP P A P
Sbjct: 1423 EGAATPSK-------------------GDLTPPAVTPVSLKKAPATSAPKGGP--ATP-- 1459
Query: 249 GFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGA--------A 300
S+G P S A +A S P AP+ P GA +
Sbjct: 1460 ------SSKGDPTLPAVTPPSPKEPPAPKQVATSSSP--KKAPATPAPMGAPTLPAVIPS 1511
Query: 301 SPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPE 360
SP ++ ++P R+P +A + ++ + A A S +PA +P E
Sbjct: 1512 SPKEVPATPSSRRDP--IAPTATLLSKKTPATLAPKEALIPPAMTVPSPKKTPAIPTPKE 1569
Query: 361 SWGRQS----------TASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGS 410
+ S T S++ + L+P +A P + +
Sbjct: 1570 APATPSSKEASSPPAVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPEKGPA 1629
Query: 411 QEIPRGELDLSMTNLRGAEGSMRGARREPEE---PEGAVAARAARGQGGRLPRTGRYAAL 467
P+G + T+ S++ + P GA +A++G + T L
Sbjct: 1630 TPAPKG----TPTSPPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKEVL 1685
Query: 468 RRRSTSGLPDYRAPPSPEPPPSPGSAD-----PDSSPLAKAASPSPPLRLEGSP--PTRR 520
+ P AP P SA PD P AK S P + +P P ++
Sbjct: 1686 VAPAPESTPIITAPTRKGPQTKKSSATSPPICPD--PSAKNGSKGPLSTVAPAPLLPVQK 1743
Query: 521 DSG-SSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSPEGAS 579
DS +++ D S S KG PL + + L A A + + + A S P
Sbjct: 1744 DSSKTAKGKDASHSPKG--PLAPPESKASTPLTAAAFEKVLPKPESASVSAAPSPPVSLP 1801
Query: 580 QEPPTAEQPQPVQRQFTNKEKLIMISRSHAIGVEEELE 617
P P Q+ + L++ S S + +E E
Sbjct: 1802 LAPSPVPTLPPKQQFLPSSPGLVLESPSKPLAPADEDE 1839
Score = 30.4 bits (67), Expect = 5.1
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 76 PKATGTNREGGKQLP-PAGSSHRVPTTANSSSSGSKNRS-RSHPRAPGGVNSSSAGAPRS 133
P AT + +GG P P G+ T S G S + P P S G P +
Sbjct: 1198 PAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGLATPSPKGAPTTPAATPPSPKGGPAT 1257
Query: 134 TPPARAASPSSSS 146
PP A +P +++
Sbjct: 1258 PPPKGAPTPPAAT 1270
Score = 30.4 bits (67), Expect = 5.1
Identities = 75/356 (21%), Positives = 123/356 (34%), Gaps = 43/356 (12%)
Query: 288 PAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAA 347
PA PS + A+SPP A +P + PS E + + A T +
Sbjct: 1571 PATPSS---KEASSPP--AVTPSTYKGAPSPKELLIPPAVTSPSPKEAPTPPAVTPPSPE 1625
Query: 348 SSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGR----DRGGDAEGASCSWQR 403
++PAP P S T SS DS S ++ G +G A+ + +
Sbjct: 1626 KGPATPAPKGTPTS--PPVTPSSLKDSPTSPASVTCKMGATVPQASKGLPAKKGPTALKE 1683
Query: 404 --------------------PPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPE 443
P ++ S P D S N G++G + P P
Sbjct: 1684 VLVAPAPESTPIITAPTRKGPQTKKSSATSPPICPDPSAKN--GSKGPLSTVAPAPLLPV 1741
Query: 444 GAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKA 503
+++ A+G+ G A ++++ L A + P P SA ++P
Sbjct: 1742 QKDSSKTAKGKDASHSPKGPLAPPESKASTPLT---AAAFEKVLPKPESASVSAAPSPPV 1798
Query: 504 ASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAV 563
+ P P + PP ++ SS S +K P E + +L + + V
Sbjct: 1799 SLPLAPSPVPTLPPKQQFLPSSPGLVLESPSKPLAPADE-----DELLPLIPPEPISGGV 1853
Query: 564 AAPVLGAEQSSPEGASQEPPTAEQPQPVQRQFTNKEKLIMISRSHAIGVEEELEST 619
+ +P+ A PT QPV + NK ++ EE +ST
Sbjct: 1854 PFQSVLVNMPTPKSAGIPVPTPSAKQPVTK--NNKGSGTESDSDESVPELEEQDST 1907
Score = 30.0 bits (66), Expect = 6.6
Identities = 20/69 (28%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 76 PKATGTNREGGKQLPP-AGSSHRVPTTANSSSSG-SKNRSRSHPRAPGGVNSSSAGAPRS 133
P AT + +GG PP G+ + T S G + + + P P S G+P +
Sbjct: 1267 PAATPPSLKGGLATPPHKGAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSPGT 1326
Query: 134 TPPARAASP 142
PP A +P
Sbjct: 1327 PPPKGAPTP 1335
>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
sapiens]
Length = 1487
Score = 52.0 bits (123), Expect = 2e-06
Identities = 101/404 (25%), Positives = 136/404 (33%), Gaps = 61/404 (15%)
Query: 218 LAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAA 277
L A A A S +P NG + RGL PG G +G A A A
Sbjct: 295 LDGAKGEAGAPGVKGESGSPGE--------NGSPGPMGPRGL---PGERGRTGPAGAAGA 343
Query: 278 MLAKG----SWPPHPAAPSGGR-------PRGAASP-----PDLASSPRC-PREPPSLAE 320
G + PP P P+GG +G A P P+ A PR P P S
Sbjct: 344 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 403
Query: 321 AVYSVYRERSGVAGSRRAAAATAAAAASSCSSP-APCSPPESWGRQSTASSFVDSSLSAF 379
A S G+ G++ +A A A A P P P + G + ++ F
Sbjct: 404 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGF 463
Query: 380 ALLPLQGGRDRGGDA--EGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGS------ 431
QG + G A +GA G+RG++ P G + RGA G+
Sbjct: 464 K--GEQGPKGEPGPAGPQGAP-GPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQ 520
Query: 432 --MRGARREPEE--PEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPP 487
+ G + P E P G + A G GR G A R +G P P
Sbjct: 521 DGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA---RGLTGRPGDAGP------ 571
Query: 488 PSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTST 547
G P +P + P PP G R G P +N E G
Sbjct: 572 --QGKVGPSGAP-GEDGRPGPP----GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPG 624
Query: 548 ESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEP-PTAEQPQP 590
L + G+ ++ A P A + G P P+ Q P
Sbjct: 625 APGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLP 668
Score = 49.7 bits (117), Expect = 8e-06
Identities = 84/298 (28%), Positives = 97/298 (32%), Gaps = 44/298 (14%)
Query: 238 AAAPPGAIPL---NGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGS-WPPHPAAPSG 293
A PPG L G + RG PG G SG+ A A G PP P P G
Sbjct: 967 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 1026
Query: 294 GRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSC-SS 352
G A P SP P A GV G R A A A S
Sbjct: 1027 --LTGPAGEPGREGSPGADGPPGRDGAA---------GVKGDRGETGAVGAPGAPGPPGS 1075
Query: 353 PAPCSPPESWGRQSTASSFVDSSLSAFA-LLPLQGGRDRGGDAEGASCSWQRPPGERGSQ 411
P P P G + A + S A +QG + GD A PGERG +
Sbjct: 1076 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG-----EPGERGLK 1130
Query: 412 EIPRGELDLSMTNLRGAEGSM-----RGAR--------REPEEPEGAVAARAARGQGGRL 458
RG T L+G G +GA R P P G A G G +
Sbjct: 1131 G-HRG-----FTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPI 1184
Query: 459 PRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPG---SADPDSSPLAKAASPSPPLRLE 513
G +G P PP P PP PG SA P K P +R +
Sbjct: 1185 GPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRAD 1242
Score = 46.2 bits (108), Expect = 9e-05
Identities = 82/361 (22%), Positives = 110/361 (30%), Gaps = 36/361 (9%)
Query: 210 VHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGS 269
+ L KD AA A + AP G G G KPG G
Sbjct: 628 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAP-GPSGFQGLPGPPGPPGEGGKPGDQGVP 686
Query: 270 GDAFGAAAML----------------AKGSWPPH--PAAPSGGRPRGA---ASPPDLASS 308
G+A GA ++ A+G P P P P+GA A PP
Sbjct: 687 GEA-GAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 745
Query: 309 PRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSP-APCSPPESWGRQST 367
P P A + + G G + A + P P P + G +
Sbjct: 746 PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGE 805
Query: 368 ASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRG 427
+ + P +RG + PPG G + + G
Sbjct: 806 VGPPGPAGSAGARGAP----GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 861
Query: 428 AEGSMRGARRE-PEEPEGAVAARAARGQGGRLPRTGRYAALRR---RSTSGLPDYRAPPS 483
A G + P+ P G + ARG G TG A R ++G P PP
Sbjct: 862 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG 921
Query: 484 PEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREA 543
P P A DS P +A P L+G + G D PS + P A
Sbjct: 922 PSGKDGPKGARGDSGPPGRAGEPG----LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLA 977
Query: 544 G 544
G
Sbjct: 978 G 978
Score = 43.5 bits (101), Expect = 6e-04
Identities = 75/332 (22%), Positives = 103/332 (31%), Gaps = 52/332 (15%)
Query: 260 ELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLA 319
E P G G GA + P P P P G PP L + A
Sbjct: 130 EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGN---------FA 180
Query: 320 EAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAF 379
+ + E++G G++ P P P G Q + +S
Sbjct: 181 AQMAGGFDEKAG--GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG- 237
Query: 380 ALLPLQGGR----------DRGGDAEGASCSWQRPPGERGSQEIP-----------RGEL 418
P+ G R D G + + PPG +G++ P RG
Sbjct: 238 ---PM-GPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYP 293
Query: 419 DLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDY 478
L ++G P E G+ RG G RTG A R G P
Sbjct: 294 GLDGAKGEAGAPGVKGESGSPGE-NGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 352
Query: 479 RAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYT 538
PP P P+ G P + A P+ EG+ R + G+ S P
Sbjct: 353 AGPPGP-VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP-------- 403
Query: 539 PLREAGTSTESVLDAVAGQTRDSAVAAPVLGA 570
AG S D + G + SA A + GA
Sbjct: 404 ----AGASGNPGTDGIPG-AKGSAGAPGIAGA 430
Score = 33.5 bits (75), Expect = 0.60
Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 15/96 (15%)
Query: 410 SQEIPRGEL-DLSMTNLRGAEGSM--RGARREPEE------------PEGAVAARAARGQ 454
S EIP GE + T+L A G +G + EP + P+G + RG
Sbjct: 77 SPEIPFGECCPICPTDLATASGQPGPKGQKGEPGDIKDIVGPKGPPGPQGPAGEQGPRGD 136
Query: 455 GGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSP 490
G G R G P PP P PP P
Sbjct: 137 RGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGP 172
>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
sapiens]
Length = 1418
Score = 52.0 bits (123), Expect = 2e-06
Identities = 101/404 (25%), Positives = 136/404 (33%), Gaps = 61/404 (15%)
Query: 218 LAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAA 277
L A A A S +P NG + RGL PG G +G A A A
Sbjct: 226 LDGAKGEAGAPGVKGESGSPGE--------NGSPGPMGPRGL---PGERGRTGPAGAAGA 274
Query: 278 MLAKG----SWPPHPAAPSGGR-------PRGAASP-----PDLASSPRC-PREPPSLAE 320
G + PP P P+GG +G A P P+ A PR P P S
Sbjct: 275 RGNDGQPGPAGPPGPVGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP 334
Query: 321 AVYSVYRERSGVAGSRRAAAATAAAAASSCSSP-APCSPPESWGRQSTASSFVDSSLSAF 379
A S G+ G++ +A A A A P P P + G + ++ F
Sbjct: 335 AGASGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGF 394
Query: 380 ALLPLQGGRDRGGDA--EGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGS------ 431
QG + G A +GA G+RG++ P G + RGA G+
Sbjct: 395 K--GEQGPKGEPGPAGPQGAP-GPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFPGQ 451
Query: 432 --MRGARREPEE--PEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPP 487
+ G + P E P G + A G GR G A R +G P P
Sbjct: 452 DGLAGPKGAPGERGPSGLAGPKGANGDPGRPGEPGLPGA---RGLTGRPGDAGP------ 502
Query: 488 PSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTST 547
G P +P + P PP G R G P +N E G
Sbjct: 503 --QGKVGPSGAP-GEDGRPGPP----GPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPG 555
Query: 548 ESVLDAVAGQTRDSAVAAPVLGAEQSSPEGASQEP-PTAEQPQP 590
L + G+ ++ A P A + G P P+ Q P
Sbjct: 556 APGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLP 599
Score = 49.7 bits (117), Expect = 8e-06
Identities = 84/298 (28%), Positives = 97/298 (32%), Gaps = 44/298 (14%)
Query: 238 AAAPPGAIPL---NGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGS-WPPHPAAPSG 293
A PPG L G + RG PG G SG+ A A G PP P P G
Sbjct: 898 AEGPPGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPG 957
Query: 294 GRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSC-SS 352
G A P SP P A GV G R A A A S
Sbjct: 958 --LTGPAGEPGREGSPGADGPPGRDGAA---------GVKGDRGETGAVGAPGAPGPPGS 1006
Query: 353 PAPCSPPESWGRQSTASSFVDSSLSAFA-LLPLQGGRDRGGDAEGASCSWQRPPGERGSQ 411
P P P G + A + S A +QG + GD A PGERG +
Sbjct: 1007 PGPAGPTGKQGDRGEAGAQGPMGPSGPAGARGIQGPQGPRGDKGEAG-----EPGERGLK 1061
Query: 412 EIPRGELDLSMTNLRGAEGSM-----RGAR--------REPEEPEGAVAARAARGQGGRL 458
RG T L+G G +GA R P P G A G G +
Sbjct: 1062 G-HRG-----FTGLQGLPGPPGPSGDQGASGPAGPSGPRGPPGPVGPSGKDGANGIPGPI 1115
Query: 459 PRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPG---SADPDSSPLAKAASPSPPLRLE 513
G +G P PP P PP PG SA P K P +R +
Sbjct: 1116 GPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPLQYMRAD 1173
Score = 46.2 bits (108), Expect = 9e-05
Identities = 82/361 (22%), Positives = 110/361 (30%), Gaps = 36/361 (9%)
Query: 210 VHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGS 269
+ L KD AA A + AP G G G KPG G
Sbjct: 559 LRGLPGKDGETGAAGPPGPAGPAGERGEQGAP-GPSGFQGLPGPPGPPGEGGKPGDQGVP 617
Query: 270 GDAFGAAAML----------------AKGSWPPH--PAAPSGGRPRGA---ASPPDLASS 308
G+A GA ++ A+G P P P P+GA A PP
Sbjct: 618 GEA-GAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGASGPAGPPGAQGP 676
Query: 309 PRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSP-APCSPPESWGRQST 367
P P A + + G G + A + P P P + G +
Sbjct: 677 PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGGRGLTGPIGPPGPAGANGEKGE 736
Query: 368 ASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRG 427
+ + P +RG + PPG G + + G
Sbjct: 737 VGPPGPAGSAGARGAP----GERGETGPPGPAGFAGPPGADGQPGAKGEQGEAGQKGDAG 792
Query: 428 AEGSMRGARRE-PEEPEGAVAARAARGQGGRLPRTGRYAALRR---RSTSGLPDYRAPPS 483
A G + P+ P G + ARG G TG A R ++G P PP
Sbjct: 793 APGPQGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGSNGNPGPPGPPG 852
Query: 484 PEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREA 543
P P A DS P +A P L+G + G D PS + P A
Sbjct: 853 PSGKDGPKGARGDSGPPGRAGEPG----LQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLA 908
Query: 544 G 544
G
Sbjct: 909 G 909
Score = 43.5 bits (101), Expect = 6e-04
Identities = 75/332 (22%), Positives = 103/332 (31%), Gaps = 52/332 (15%)
Query: 260 ELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLA 319
E P G G GA + P P P P G PP L + A
Sbjct: 61 EQGPRGDRGDKGEKGAPGPRGRDGEPGTPGNPGPPGPPGPPGPPGLGGN---------FA 111
Query: 320 EAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAF 379
+ + E++G G++ P P P G Q + +S
Sbjct: 112 AQMAGGFDEKAG--GAQLGVMQGPMGPMGPRGPPGPAGAPGPQGFQGNPGEPGEPGVSG- 168
Query: 380 ALLPLQGGR----------DRGGDAEGASCSWQRPPGERGSQEIP-----------RGEL 418
P+ G R D G + + PPG +G++ P RG
Sbjct: 169 ---PM-GPRGPPGPPGKPGDDGEAGKPGKAGERGPPGPQGARGFPGTPGLPGVKGHRGYP 224
Query: 419 DLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDY 478
L ++G P E G+ RG G RTG A R G P
Sbjct: 225 GLDGAKGEAGAPGVKGESGSPGE-NGSPGPMGPRGLPGERGRTGPAGAAGARGNDGQPGP 283
Query: 479 RAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYT 538
PP P P+ G P + A P+ EG+ R + G+ S P
Sbjct: 284 AGPPGP-VGPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGP-------- 334
Query: 539 PLREAGTSTESVLDAVAGQTRDSAVAAPVLGA 570
AG S D + G + SA A + GA
Sbjct: 335 ----AGASGNPGTDGIPG-AKGSAGAPGIAGA 361
Score = 32.0 bits (71), Expect = 1.7
Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 13/88 (14%)
Query: 403 RPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTG 462
R PG +G + P D+ G +G P P+G + RG G G
Sbjct: 29 RQPGPKGQKGEPGDIKDIV-----GPKG--------PPGPQGPAGEQGPRGDRGDKGEKG 75
Query: 463 RYAALRRRSTSGLPDYRAPPSPEPPPSP 490
R G P PP P PP P
Sbjct: 76 APGPRGRDGEPGTPGNPGPPGPPGPPGP 103
>gi|158854042 hypothetical protein LOC222183 [Homo sapiens]
Length = 653
Score = 51.6 bits (122), Expect = 2e-06
Identities = 81/312 (25%), Positives = 108/312 (34%), Gaps = 80/312 (25%)
Query: 267 GGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVY 326
GGSG GA GGRP A SPPD SSP P + +
Sbjct: 315 GGSGQRSGA----------------HGGRPGSAHSPPDKPSSP-----SPRVRD------ 347
Query: 327 RERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVD------------- 373
+AAAA A SP+P S P S GR A+
Sbjct: 348 ----------KAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGGAGRRRRRRRRRRRSR 397
Query: 374 SSLSAFALLPLQGGRDRGGDAEGASCSWQRPPGERG-SQEIPRGELDLSMTNLRGA---- 428
SS SA P + GR R RP RG S+ + R + RGA
Sbjct: 398 SSASA----PRRRGRRR-----------PRPAPPRGSSRSLSRARSSSDSGSGRGAPGPG 442
Query: 429 --EGSMRG----ARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPP 482
GS RG +R E P A A + G R G RS P R+
Sbjct: 443 PEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPG--PHPRSWS 500
Query: 483 SPEPPPSPGSADPDSSPLAKAASPSP--PLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPL 540
S P S + P + + SPSP PL + R +++ ++ Y+P+
Sbjct: 501 SSRSPSKSRSRSAEKRPHSPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPI 560
Query: 541 REAGTSTESVLD 552
R+ + S ++
Sbjct: 561 RKRRRDSPSFME 572
Score = 37.0 bits (84), Expect = 0.054
Identities = 91/377 (24%), Positives = 123/377 (32%), Gaps = 107/377 (28%)
Query: 212 SLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSG- 270
S R +D AAAAA A S S P +AP Q RG GG+G
Sbjct: 342 SPRVRDKAAAAAPTPPARGKESPS-PRSAPSS-----------QGRG----GRAAGGAGR 385
Query: 271 ----------DAFGAAAMLAKGSWPPHPAAPSG-----GRPRGAASPPDLASSPRCPREP 315
A+A +G P PA P G R R ++ +P EP
Sbjct: 386 RRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEP 445
Query: 316 PSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSS 375
S G G + A A + +SP+P
Sbjct: 446 GS-----------ERGHGGHGKRAKERPPRARPASTSPSP-------------------- 474
Query: 376 LSAFALLPLQGGRDRGGDAEGASCSWQRPPGER--GSQEIPRGELDLSMTNLRGAEGSMR 433
G R G EG S S P R S P S + R AE
Sbjct: 475 ----------GAHGRRGGPEGKSSSRSPGPHPRSWSSSRSP------SKSRSRSAEKRPH 518
Query: 434 GARREP-------EEPEGAVAARAARGQGGRLPRTGR-YAALRRRSTSGLPDYRAP---- 481
R P + +G AR + + R R R Y+ +R+R P + P
Sbjct: 519 SPSRSPSPKKPLSRDKDGEGRARHSEAEATRARRRSRSYSPIRKRRRDS-PSFMEPRRIT 577
Query: 482 -----PSPEPPPSPGSA----DPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSS 532
P P PSP S+ D S + + SPSP GS +R S++ PS
Sbjct: 578 SARKRPIPYYRPSPSSSSSCLSSDYSTRSHSRSPSPG-HSHGSYSSRSHGTRSRTRSPSR 636
Query: 533 SNKGYTPLREAGTSTES 549
+ +P + +S+ES
Sbjct: 637 TP---SPSYHSRSSSES 650
Score = 36.6 bits (83), Expect = 0.071
Identities = 29/107 (27%), Positives = 39/107 (36%), Gaps = 20/107 (18%)
Query: 430 GSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPS 489
GS R + P G + + GG R+G + R + PP
Sbjct: 290 GSQRSSGSRSPSPSGGSGWGSPQRNGGSGQRSGAHGG------------RPGSAHSPPDK 337
Query: 490 PGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKG 536
P S P A AA+P+PP R + SP R PSS +G
Sbjct: 338 PSSPSPRVRDKAAAAAPTPPARGKESPSPR--------SAPSSQGRG 376
Score = 34.7 bits (78), Expect = 0.27
Identities = 76/318 (23%), Positives = 103/318 (32%), Gaps = 86/318 (27%)
Query: 77 KATGTNREGGKQLP-PAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNS---------- 125
+ TG+ R G + P P+G S N GS RS +H PG +S
Sbjct: 287 RKTGSQRSSGSRSPSPSGGSGWGSPQRNG---GSGQRSGAHGGRPGSAHSPPDKPSSPSP 343
Query: 126 ---SSAGAPRSTPPAR---AASPSSSSTSVGFFFRIFSGYLHSDKLKVFGPLIMGIGIFL 179
A A TPPAR + SP S+ +S G R G
Sbjct: 344 RVRDKAAAAAPTPPARGKESPSPRSAPSSQGRGGRAAGG--------------------- 382
Query: 180 FICANAVLHENRDKKTKIINLRDLYSTVIDVHSLRAKDLAA---AAAAAAAAAASSSSSA 236
R ++ + R S R + A ++ + + A SSS S
Sbjct: 383 ---------AGRRRRRRRRRRRSRSSASAPRRRGRRRPRPAPPRGSSRSLSRARSSSDSG 433
Query: 237 PAAAPPGAIPLNGFLSYVQSRGLELK--------------PGGCGGSGDAFGAAAMLAKG 282
PG P G G K PG G G G ++ + G
Sbjct: 434 SGRGAPGPGPEPGSERGHGGHGKRAKERPPRARPASTSPSPGAHGRRGGPEGKSSSRSPG 493
Query: 283 SWPPHP------AAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSR 336
PHP +PS R R A P S P++P S R++ G +R
Sbjct: 494 ---PHPRSWSSSRSPSKSRSRSAEKRPHSPSRSPSPKKPLS---------RDKDGEGRAR 541
Query: 337 RA-AAATAAAAASSCSSP 353
+ A AT A S SP
Sbjct: 542 HSEAEATRARRRSRSYSP 559
Score = 31.6 bits (70), Expect = 2.3
Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 76 PKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRAPGGVNSSSAGAPRSTP 135
P+ G R + PP GSS + +SS SGS + PG R+
Sbjct: 403 PRRRGRRRP--RPAPPRGSSRSLSRARSSSDSGSGRGAPGPGPEPGSERGHGGHGKRAKE 460
Query: 136 PARAASPSSSSTSVG 150
A P+S+S S G
Sbjct: 461 RPPRARPASTSPSPG 475
Score = 30.8 bits (68), Expect = 3.9
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 11/67 (16%)
Query: 96 HRVPTTANSSSSGSKNRSRSHPRAP------GGVNSSSAGA-PRSTPPARAASPS----S 144
+R +++SS S +RSH R+P G +S S G R+ P+R SPS S
Sbjct: 587 YRPSPSSSSSCLSSDYSTRSHSRSPSPGHSHGSYSSRSHGTRSRTRSPSRTPSPSYHSRS 646
Query: 145 SSTSVGF 151
SS S GF
Sbjct: 647 SSESGGF 653
>gi|169206489 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 51.2 bits (121), Expect = 3e-06
Identities = 81/296 (27%), Positives = 106/296 (35%), Gaps = 62/296 (20%)
Query: 288 PAAPSGG----RPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATA 343
P PSG RPR A S P R A++ R+ G A +A A
Sbjct: 69 PTRPSGSLTTRRPRDAGEAA--VSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPA 126
Query: 344 AAAASSCSSPAPCS----PPESW---------------------GRQSTASSFVDSSLSA 378
+ A SC PAP S P W GR S A + + LS
Sbjct: 127 PSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLS- 185
Query: 379 FALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPR------GELDLSMTNLRGAE-GS 431
L PL+ + +G SW G G+ PR G + +RG+E +
Sbjct: 186 --LCPLKLRKGSSRRCQGLGSSW----GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRA 239
Query: 432 MRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPG 491
G+ P ARG GG + R++A STSG S EP P
Sbjct: 240 CPGSTLPPSSVLAGCVGTRARGHGG--VQRQRFSAPSSHSTSGGRPTGERSSREPLLDPS 297
Query: 492 SADPDSS-PLAKAASPSPP------LRLEGS--PPT------RRDSGSSQSDDPSS 532
A S+ P A+ A SPP RL G PT R D +++ +DP S
Sbjct: 298 KAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRS 353
Score = 39.7 bits (91), Expect = 0.008
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 66 GIAMAVVGYWPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRA--PGGV 123
G + G P +G GG P S+ R P T +S G S S PRA PGG
Sbjct: 115 GPGLDCAGSAPAPSGAQSCGG---PAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGGG 171
Query: 124 NSSSAGAPRSTP 135
SS AGA R TP
Sbjct: 172 RSSRAGARRKTP 183
Score = 35.8 bits (81), Expect = 0.12
Identities = 88/384 (22%), Positives = 118/384 (30%), Gaps = 58/384 (15%)
Query: 224 AAAAAAASSSSSAPAAAPPGAI--PLNGF-LSYVQSRGLELKPGGC---GGSGDAFGAAA 277
A +A A S + S AP A+ PL + S RG P GG GA
Sbjct: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARR 180
Query: 278 MLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRR 337
P S R +G S + +P PR +++ G AG+R
Sbjct: 181 KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR----------ALWNRHGGAAGARA 230
Query: 338 AAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGA 397
+ A + P G ++ V R R
Sbjct: 231 QVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQ--------------RQRFSAPSSH 276
Query: 398 SCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGR 457
S S RP GER S+E L + ++ AR P AA+ G G R
Sbjct: 277 STSGGRPTGERSSRE------PLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKR 330
Query: 458 LPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSP----------GSADPDSSPLAKAASPS 507
P + A ST+ D R+ + EP GS+ + P A P
Sbjct: 331 KPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPG 390
Query: 508 PPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTS---TESVLDAVAGQTRDSAVA 564
P +PP R G S G T L +G T SV R S
Sbjct: 391 KPAPRGSAPPARLRGGGGGS--------GLTQLVGSGRGSGVTHSVGTHALATRRGSRAP 442
Query: 565 APVLGAEQSSPEGASQEPPTAEQP 588
PV G + P P + P
Sbjct: 443 RPV-GVLRGVPHFRPLSSPAPQSP 465
>gi|169205942 PREDICTED: hypothetical protein [Homo sapiens]
Length = 564
Score = 51.2 bits (121), Expect = 3e-06
Identities = 81/296 (27%), Positives = 106/296 (35%), Gaps = 62/296 (20%)
Query: 288 PAAPSGG----RPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATA 343
P PSG RPR A S P R A++ R+ G A +A A
Sbjct: 69 PTRPSGSLTTRRPRDAGEAA--VSGPSRQRRTSRARTALWGRRSRRAAGPGLDCAGSAPA 126
Query: 344 AAAASSCSSPAPCS----PPESW---------------------GRQSTASSFVDSSLSA 378
+ A SC PAP S P W GR S A + + LS
Sbjct: 127 PSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARRKTPLS- 185
Query: 379 FALLPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPR------GELDLSMTNLRGAE-GS 431
L PL+ + +G SW G G+ PR G + +RG+E +
Sbjct: 186 --LCPLKLRKGSSRRCQGLGSSW----GGSGTPPPPRALWNRHGGAAGARAQVRGSEKRA 239
Query: 432 MRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPG 491
G+ P ARG GG + R++A STSG S EP P
Sbjct: 240 CPGSTLPPSSVLAGCVGTRARGHGG--VQRQRFSAPSSHSTSGGRPTGERSSREPLLDPS 297
Query: 492 SADPDSS-PLAKAASPSPP------LRLEGS--PPT------RRDSGSSQSDDPSS 532
A S+ P A+ A SPP RL G PT R D +++ +DP S
Sbjct: 298 KAARASALPTARVAHASPPSLAAAQWRLGGGKRKPTVLKGAVRTDLSTAEEEDPRS 353
Score = 39.7 bits (91), Expect = 0.008
Identities = 29/72 (40%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 66 GIAMAVVGYWPKATGTNREGGKQLPPAGSSHRVPTTANSSSSGSKNRSRSHPRA--PGGV 123
G + G P +G GG P S+ R P T +S G S S PRA PGG
Sbjct: 115 GPGLDCAGSAPAPSGAQSCGG---PAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGGG 171
Query: 124 NSSSAGAPRSTP 135
SS AGA R TP
Sbjct: 172 RSSRAGARRKTP 183
Score = 35.8 bits (81), Expect = 0.12
Identities = 88/384 (22%), Positives = 118/384 (30%), Gaps = 58/384 (15%)
Query: 224 AAAAAAASSSSSAPAAAPPGAI--PLNGF-LSYVQSRGLELKPGGC---GGSGDAFGAAA 277
A +A A S + S AP A+ PL + S RG P GG GA
Sbjct: 121 AGSAPAPSGAQSCGGPAPASALRRPLTQWDASGGGGRGSHSGPRAGTPGGGRSSRAGARR 180
Query: 278 MLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRR 337
P S R +G S + +P PR +++ G AG+R
Sbjct: 181 KTPLSLCPLKLRKGSSRRCQGLGSSWGGSGTPPPPR----------ALWNRHGGAAGARA 230
Query: 338 AAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGA 397
+ A + P G ++ V R R
Sbjct: 231 QVRGSEKRACPGSTLPPSSVLAGCVGTRARGHGGVQ--------------RQRFSAPSSH 276
Query: 398 SCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGR 457
S S RP GER S+E L + ++ AR P AA+ G G R
Sbjct: 277 STSGGRPTGERSSRE------PLLDPSKAARASALPTARVAHASPPSLAAAQWRLGGGKR 330
Query: 458 LPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSP----------GSADPDSSPLAKAASPS 507
P + A ST+ D R+ + EP GS+ + P A P
Sbjct: 331 KPTVLKGAVRTDLSTAEEEDPRSGRALEPAQGSELWARAERHGGSSGARTLPTPSRARPG 390
Query: 508 PPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTS---TESVLDAVAGQTRDSAVA 564
P +PP R G S G T L +G T SV R S
Sbjct: 391 KPAPRGSAPPARLRGGGGGS--------GLTQLVGSGRGSGVTHSVGTHALATRRGSRAP 442
Query: 565 APVLGAEQSSPEGASQEPPTAEQP 588
PV G + P P + P
Sbjct: 443 RPV-GVLRGVPHFRPLSSPAPQSP 465
>gi|123701326 zinc finger protein 831 [Homo sapiens]
Length = 1677
Score = 50.8 bits (120), Expect = 4e-06
Identities = 91/362 (25%), Positives = 128/362 (35%), Gaps = 50/362 (13%)
Query: 207 VIDVHSLRAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGC 266
V D+HS + + +A +S SS A PG +P G + G L+
Sbjct: 827 VEDLHSWKQPEPVSAETPGGPTQPASLSSQKQDADPGEVP-GGSKESARQVGEPLE---- 881
Query: 267 GGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVY 326
SG + AA++ K P A P A P LA+ P+ PR +LA+ +S
Sbjct: 882 -SSGASLAAASVALKRVGPRDKATPLHPAAPAPAEHPSLATPPQAPRVLSALADNAFS-- 938
Query: 327 RERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESW------GRQSTASSFVDSSLSAFA 380
A + P P P S G +SFV S L
Sbjct: 939 ----------PKYLLRLPQAETPLPLPIPWGPRHSQDSLCSSGWPEERASFVGSGLGT-P 987
Query: 381 LLPLQGGRDRGGDA----EGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAE------- 429
L P G+A E SCS RP R ++ + D T+ A
Sbjct: 988 LSPSPASGPSPGEADSILEDPSCS--RPQDGRKGAQLGGDKGDRMATSRPAARELPISAP 1045
Query: 430 GSMRGARREPEEPE-GAVAARAARGQGGRLPRTGRYAALRRRSTSG------LPDYR--A 480
G+ R A P P A + G R+ R + L R SG +P++
Sbjct: 1046 GAPREATSSPPTPTCEAHLVQDMEGDSHRIHRLCMGSTLARARLSGDVLNPWVPNWELGE 1105
Query: 481 PP--SPEPPPSPGSADPD-SSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGY 537
PP +PE P S PD SPL + + R +G PP + S S S+
Sbjct: 1106 PPGNAPEDPSSGPLVGPDPCSPLQPGSFLTALTRPQGVPPGWPELALSSHSGTSRSHSTR 1165
Query: 538 TP 539
+P
Sbjct: 1166 SP 1167
>gi|48762934 alpha 2 type I collagen [Homo sapiens]
Length = 1366
Score = 50.4 bits (119), Expect = 5e-06
Identities = 81/331 (24%), Positives = 106/331 (32%), Gaps = 49/331 (14%)
Query: 223 AAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDA--------FG 274
A A A S S P G I G + + G + + G G +G A G
Sbjct: 227 APGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPAGPRGEVG 286
Query: 275 AAAMLAKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAG 334
+ P +P A +GAA P +A +P P G+ G
Sbjct: 287 LPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPGLPGP---------------RGIPG 331
Query: 335 SRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRD--RGG 392
AA AT A PA S ES + S+ P G + RG
Sbjct: 332 PVGAAGATGARGLVGEPGPAG-SKGESGNKGEPGSAGPQGP-------PGPSGEEGKRGP 383
Query: 393 DAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAAR 452
+ E S PPG RGS L GA+G R P GA R
Sbjct: 384 NGEAGSAGPPGPPGLRGSP---------GSRGLPGADG--RAGVMGPPGSRGASGPAGVR 432
Query: 453 GQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRL 512
G G R G + R G P P E P D P+ A + P +
Sbjct: 433 GPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPGPIGPAGARGEPGNI 492
Query: 513 EGSPPTRRDSGSSQSDDPSSSNKGYTPLREA 543
G P + +G D + +KG+ L A
Sbjct: 493 -GFPGPKGPTG----DPGKNGDKGHAGLAGA 518
Score = 43.5 bits (101), Expect = 6e-04
Identities = 66/250 (26%), Positives = 82/250 (32%), Gaps = 33/250 (13%)
Query: 241 PPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSG-GRPRGA 299
PPG G + SRG PG G G+ A+ G P+ PSG RGA
Sbjct: 593 PPGESGAAGPTGPIGSRGPSGPPGPDGNKGEPGVVGAVGTAG-----PSGPSGLPGERGA 647
Query: 300 ASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPA-PCSP 358
A P P + R G G+ A AT + + PA P P
Sbjct: 648 AGIPGGKGEKGEPGLRGEIGNPGRDGARGAPGAVGAPGPAGATGDRGEAGAAGPAGPAGP 707
Query: 359 PESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQR-PPGERGSQEIPRGE 417
S G + G G A A + Q GERG++ P+GE
Sbjct: 708 RGSPGERGEV-----------------GPAGPNGFAGPAGAAGQPGAKGERGAKG-PKGE 749
Query: 418 LDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPD 477
+ G G + A P P G +RG GG TG A R G
Sbjct: 750 -----NGVVGPTGPVGAAG--PAGPNGPPGPAGSRGDGGPPGMTGFPGAAGRTGPPGPSG 802
Query: 478 YRAPPSPEPP 487
PP P P
Sbjct: 803 ISGPPGPPGP 812
Score = 42.7 bits (99), Expect = 0.001
Identities = 76/314 (24%), Positives = 95/314 (30%), Gaps = 44/314 (14%)
Query: 241 PPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKGSWPPHPAAPSGGRPRGAA 300
PPGA G + G +PG G +G A G A K HP P RG
Sbjct: 101 PPGAAGAPGPQGFQGPAGEPGEPGQTGPAG-ARGPAGPPGKAGEDGHPGKPGRPGERGVV 159
Query: 301 SPPDLASSPRCP---------------------------REPPSLAEAVYSVYRERSGVA 333
P P P EP + E G+
Sbjct: 160 GPQGARGFPGTPGLPGFKGIRGHNGLDGLKGQPGAPGVKGEPGAPGENGTPGQTGARGLP 219
Query: 334 GSR-RAAAATAAAAASSCSSPAPCSPPESWGRQS----TASSFVDSSLSAFALLPLQGGR 388
G R R A A A S S P P G + + A G
Sbjct: 220 GERGRVGAPGPAGARGSDGSVGPVGPAGPIGSAGPPGFPGAPGPKGEIGAVGNAGPAGPA 279
Query: 389 DRGGDAEGASCSWQ-RPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVA 447
G+ S PPG G+ + + + + GA G + G R P P GA
Sbjct: 280 GPRGEVGLPGLSGPVGPPGNPGANGLTGAKGAAGLPGVAGAPG-LPGPRGIP-GPVGAAG 337
Query: 448 ARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPS 507
A ARG G G + SG P+ PP P + P +A S
Sbjct: 338 ATGARGLVGEPGPAG------SKGESGNKGEPGSAGPQGPPGPSGEEGKRGPNGEAGSAG 391
Query: 508 P--PLRLEGSPPTR 519
P P L GSP +R
Sbjct: 392 PPGPPGLRGSPGSR 405
Score = 40.8 bits (94), Expect = 0.004
Identities = 74/317 (23%), Positives = 96/317 (30%), Gaps = 40/317 (12%)
Query: 224 AAAAAAASSSSSAPAAAPPGAIPLN-GFLSYVQSRGLELKPGGCGGSGDAFGAAAMLAKG 282
A AA + AP P IP G +RGL +PG G G++ + G
Sbjct: 308 AKGAAGLPGVAGAPGLPGPRGIPGPVGAAGATGARGLVGEPGPAGSKGESGNKGEPGSAG 367
Query: 283 -SWPPHPAAPSGGR-PRGAAS------PPDLASSPRCPREPPSLAEAVYSVYRERSGVAG 334
PP P+ G R P G A PP L SP P + R+GV G
Sbjct: 368 PQGPPGPSGEEGKRGPNGEAGSAGPPGPPGLRGSPGSRGLPGADG---------RAGVMG 418
Query: 335 --SRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGG 392
R A+ A + + P P R S + L G R G
Sbjct: 419 PPGSRGASGPAGVRGPNGDAGRPGEPGLMGPRGLPGSPGNIGPAGKEGPVGLPGIDGRPG 478
Query: 393 DAEGASCSWQRP----PGERGSQEIPRGELDLSMTNLRGAEGSM-----RGARREP---- 439
A + PG +G P D L GA G+ GA+ P
Sbjct: 479 PIGPAGARGEPGNIGFPGPKGPTGDPGKNGDKGHAGLAGARGAPGPDGNNGAQGPPGPQG 538
Query: 440 -------EEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGS 492
+ P G + G G G+ GLP P PP
Sbjct: 539 VQGGKGEQGPPGPPGFQGLPGPSGPAGEVGKPGERGLHGEFGLPGPAGPRGERGPPGESG 598
Query: 493 ADPDSSPLAKAASPSPP 509
A + P+ PP
Sbjct: 599 AAGPTGPIGSRGPSGPP 615
Score = 40.8 bits (94), Expect = 0.004
Identities = 70/284 (24%), Positives = 87/284 (30%), Gaps = 20/284 (7%)
Query: 214 RAKDLAAAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAF 273
R ++ A A S A A PPG G L GL PG G G
Sbjct: 830 RTGEVGAVGPPGFAGEKGPSGEAGTAGPPGTPGPQGLLGAPGILGL---PGSRGERGLPG 886
Query: 274 GAAAMLAKGSWPPHPAAPSGGR-PRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGV 332
A A+ G P A P G R P GA P + +P + + G
Sbjct: 887 VAGAVGEPG--PLGIAGPPGARGPPGAVGSPGVNGAPGEAGRDGNPGNDGPPGRDGQPGH 944
Query: 333 AGSRRAAAATAAAAASSCSSP-APCSPPESWG-RQSTASSFVDSSLSAFALLPLQGGRDR 390
G R A+ P P P G R T S A G +
Sbjct: 945 KGERGYPGNIGPVGAAGAPGPHGPVGPAGKHGNRGETGPSGPVGPAGAVGPRGPSGPQGI 1004
Query: 391 GGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSM--RGARRE--PEEPEGAV 446
GD + PGE+G + +P + + L G G +GA P P G
Sbjct: 1005 RGD--------KGEPGEKGPRGLPGLKGHNGLQGLPGIAGHHGDQGAPGSVGPAGPRGPA 1056
Query: 447 AARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSP 490
G+ GR G R G PP P PP P
Sbjct: 1057 GPSGPAGKDGRTGHPGTVGPAGIRGPQGHQGPAGPPGPPGPPGP 1100
>gi|117938759 GNAS complex locus XLas [Homo sapiens]
Length = 1037
Score = 50.4 bits (119), Expect = 5e-06
Identities = 90/355 (25%), Positives = 134/355 (37%), Gaps = 90/355 (25%)
Query: 260 ELKPGGCGGSGDAFGAAAMLAKGSWPPHPAA--PSGGRPRGAASPPDLASSP-------- 309
+L PGG G +G G+ P P A P+ RG SPP + P
Sbjct: 183 DLAPGGPGAAG---------VPGAPPEEPQALRPAKAGSRGGYSPPPEETMPFELDGEGF 233
Query: 310 RCPREPPSLAEAVYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTAS 369
PP L+ + + V GS + AA A++A +PA +PP
Sbjct: 234 GDDSPPPGLSRVI-------AQVDGSSQFAAVAASSAVRL--TPAANAPP---------- 274
Query: 370 SFVDSSLSAFALLPLQGGRDRGGDAEGASCSWQR---PPGERGS-----------QEIPR 415
+V ++ + P Q + G+S W PP E GS + P
Sbjct: 275 LWVPGAIGS----PSQEAVRPPSNFTGSS-PWMEISGPPFEIGSAPAGVDDTPVNMDSPP 329
Query: 416 GELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAA-RGQGGRLPRTGRYAALRRRSTSG 474
LD + GA A R P E E A AA +GG++P G Y +
Sbjct: 330 IALDGPPIKVSGAPDKRERAERPPVEEEAAEMEGAADAAEGGKVPSPG-YGS-------- 380
Query: 475 LPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSN 534
P+ G+A D++ A A+P+ P G+ P DSG++ +D S +
Sbjct: 381 -------------PAAGAASADTAARAAPAAPADPD--SGATPEDPDSGTAPADPDSGA- 424
Query: 535 KGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQSSP----EGASQEPPTA 585
+ ++G + + D +G D A A P GA +P GA+ E P A
Sbjct: 425 --FAADPDSGAAPAAPADPDSGAAPD-APADPDSGAAPDAPADPDAGAAPEAPAA 476
Score = 36.2 bits (82), Expect = 0.092
Identities = 86/382 (22%), Positives = 124/382 (32%), Gaps = 99/382 (25%)
Query: 220 AAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAML 279
AA AA++A + +++AP PGAI S+ P GS +
Sbjct: 256 AAVAASSAVRLTPAANAPPLWVPGAIG-------SPSQEAVRPPSNFTGSSPWMEISG-- 306
Query: 280 AKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAA 339
P G P G P SP + P + + RER+ A
Sbjct: 307 --------PPFEIGSAPAGVDDTPVNMDSPPIALDGPPIKVSGAPDKRERAERPPVEEEA 358
Query: 340 AAT--AAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAEGA 397
A AA AA P+P +G + ++ D++ A P
Sbjct: 359 AEMEGAADAAEGGKVPSP-----GYGSPAAGAASADTAARAAPAAPAD------------ 401
Query: 398 SCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARAARGQGGR 457
P + E P + P +P+ A AA G
Sbjct: 402 -------PDSGATPEDP-------------------DSGTAPADPDS--GAFAADPDSGA 433
Query: 458 LPRTGRYAALRRRSTSGLPDYRA-PPSPEPPPSPGSADPDSSPLAKAASPSPPLRLEGSP 516
P AA + PD A P S P +P D ++P A AA + R
Sbjct: 434 AP-----AAPADPDSGAAPDAPADPDSGAAPDAPADPDAGAAPEAPAAPAAAETRAAHVA 488
Query: 517 PTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLDAVAGQTRDSAVAAPVLGAEQS--- 573
P D+G+ P A ++T A Q R +A AAP GA +
Sbjct: 489 PAAPDAGA--------------PTAPAASATR------AAQVRRAASAAPASGARRKIHL 528
Query: 574 ---SPEGASQEPPTAEQPQPVQ 592
SPE + +PPT P+P +
Sbjct: 529 RPPSPEIQAADPPT---PRPTR 547
Score = 36.2 bits (82), Expect = 0.092
Identities = 56/221 (25%), Positives = 78/221 (35%), Gaps = 44/221 (19%)
Query: 220 AAAAAAAAAAASSSSSAPAAAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFGAAAML 279
AA AA+A AA ++ +APA GA P + G D+ AA
Sbjct: 382 AAGAASADTAARAAPAAPADPDSGATPEDP------------DSGTAPADPDSGAFAADP 429
Query: 280 AKGSWPPHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVAGSRRAA 339
G+ P PA P G + PD + P P + A+ AG+ A
Sbjct: 430 DSGAAPAAPADPDSG------AAPDAPADPDSGAAPDAPADP----------DAGAAPEA 473
Query: 340 AATAAAAASSCSSPAPCSP----PESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGDAE 395
A AAA + + AP +P P + +T ++ V + SA P G R +
Sbjct: 474 PAAPAAAETRAAHVAPAAPDAGAPTAPAASATRAAQVRRAASA---APASGARRK----- 525
Query: 396 GASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGAR 436
RPP P + RG S RG R
Sbjct: 526 ----IHLRPPSPEIQAADPPTPRPTRASAWRGKSESSRGRR 562
>gi|170650694 centaurin, gamma 1 isoform PIKE-L [Homo sapiens]
Length = 1192
Score = 50.1 bits (118), Expect = 6e-06
Identities = 78/322 (24%), Positives = 106/322 (32%), Gaps = 85/322 (26%)
Query: 221 AAAAAAAAAASSSSSAPA------AAPPGAIPLNGFLSYVQSRGLELKPGGCGGSGDAFG 274
A + A A+ A S AP A PPG PL+G LS + KPGG S
Sbjct: 92 ALSPAPASPARPVSPAPGRRLSLWAVPPGP-PLSGGLSP------DPKPGGAPTSS---- 140
Query: 275 AAAMLAKGSWP-PHPAAPSGGRPRGAASPPDLASSPRCPREPPSLAEAVYSVYRERSGVA 333
+L+ SW P P +GG G++SP S R PP A
Sbjct: 141 RRPLLSSPSWGGPEPEGRAGGGIPGSSSPHPGTGSRRLKVAPPPPA-------------- 186
Query: 334 GSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFALLPLQGGRDRGGD 393
P PC + G + GG
Sbjct: 187 -------------------PKPCKT-----------------------VTTSGAKAGGGK 204
Query: 394 AEGASCSWQRPPGE---RGSQEIPRGELDLSMTNLRGAEGSMRGARREPEEPEGAVAARA 450
G+ SW G+ +GS+ +S A G G G A
Sbjct: 205 GAGSRLSWPESEGKPRVKGSKSSAGTGASVSAAATAAAAG---GGGSTASTSGGVGAGAG 261
Query: 451 ARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDSSPLAKAASPSPPL 510
ARG+ PR G+ L P +PP PP+P A ++ A+ P+PP+
Sbjct: 262 ARGKLS--PRKGKSKTLDNSDLHPGPPAGSPPPLTLPPTPSPATAVTAASAQPPGPAPPI 319
Query: 511 RLEGSPP---TRRDSGSSQSDD 529
LE P R+ G + + D
Sbjct: 320 TLEPPAPGLKRGREGGRASTRD 341
Score = 30.0 bits (66), Expect = 6.6
Identities = 28/111 (25%), Positives = 38/111 (34%), Gaps = 3/111 (2%)
Query: 427 GAEGSMRGARREPEEPEGAVAARAARGQGGRLPRTGRYAALRRRSTSGLPDYRAPPSPEP 486
GA GS G +P P GA R + + + + T G P+P
Sbjct: 43 GARGSETG---DPGSPRGAEEPGKKRHERLFHRQDALWISTSSAGTGGAEPPALSPAPAS 99
Query: 487 PPSPGSADPDSSPLAKAASPSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGY 537
P P S P A P PPL SP + + S P S+ +
Sbjct: 100 PARPVSPAPGRRLSLWAVPPGPPLSGGLSPDPKPGGAPTSSRRPLLSSPSW 150
>gi|45439359 triple functional domain (PTPRF interacting) [Homo
sapiens]
Length = 3097
Score = 50.1 bits (118), Expect = 6e-06
Identities = 77/309 (24%), Positives = 107/309 (34%), Gaps = 71/309 (22%)
Query: 264 GGCGGSGDAFGAAAMLAKGSWPPHPAAPS--GGRPRGAASPPDLASSPRCPREPPSLAEA 321
GG GGSG G+ A H PS GG P + S P P PP L +
Sbjct: 2297 GGSGGSGGGGGSGGGGAPSGGSGHSGGPSSCGGAPSTSRSRPSRIPQP-VRHHPPVLVSS 2355
Query: 322 VYSVYRERSGVAGSRRAAAATAAAAASSCSSPAPCSPPESWGRQSTASSFVDSSLSAFAL 381
S E ++G+ S+P P PP ++ S+
Sbjct: 2356 AASSQAEADKMSGT---------------STPGPSLPPPGAAPEAGPSA----------- 2389
Query: 382 LPLQGGRDRGGDAEGASCSWQRPPGERGSQEIPRGELDLSMTNLRGAEGSMRGARREPEE 441
R G DAEG+ ER ++ IP+ ++ S +G+ + P+
Sbjct: 2390 ---PSRRPPGADAEGS---------EREAEPIPKMKVLES-----PRKGAANASGSSPDA 2432
Query: 442 PEGAVAARAARGQGGRL----PRTGRYAALRRRSTSGLPDYRAPPSPEPPPSPGSADPDS 497
P A+ AR G L PR G + L +S +P P P S
Sbjct: 2433 P-----AKDARASLGTLPLGKPRAGAASPLNSPLSSAVPSLGKEPF-----------PPS 2476
Query: 498 SPLAKAAS-----PSPPLRLEGSPPTRRDSGSSQSDDPSSSNKGYTPLREAGTSTESVLD 552
SPL K S P+ P GS DS S Q P + G R + S+ S
Sbjct: 2477 SPLQKGGSFWSSIPASPASRPGSFTFPGDSDSLQRQTPRHAAPGKDTDRMSTCSSASEQS 2536
Query: 553 AVAGQTRDS 561
+ Q+ S
Sbjct: 2537 VQSTQSNGS 2545
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.311 0.128 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,893,325
Number of Sequences: 37866
Number of extensions: 1816943
Number of successful extensions: 31077
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 1655
Number of HSP's that attempted gapping in prelim test: 16821
Number of HSP's gapped (non-prelim): 11476
length of query: 621
length of database: 18,247,518
effective HSP length: 108
effective length of query: 513
effective length of database: 14,157,990
effective search space: 7263048870
effective search space used: 7263048870
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.