Search of human proteins with 12232463

Search of human proteins with 12232463

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|12232463 RAB, member RAS oncogene family-like 5 isoform a
[Homo sapiens]
         (185 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Ho...   384   e-107
gi|195546889 RAB, member RAS oncogene family-like 5 isoform b [H...   301   2e-82
gi|195546894 RAB, member RAS oncogene family-like 5 isoform c [H...   222   1e-58
gi|195546891 RAB, member RAS oncogene family-like 5 isoform c [H...   222   1e-58
gi|34147513 RAB7, member RAS oncogene family [Homo sapiens]            44   8e-05
gi|20270343 ADP-ribosylation factor-like 8A [Homo sapiens]             42   3e-04
gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens]        41   5e-04
gi|222144315 Ras-related protein RAB34 isoform 3 [Homo sapiens]        41   5e-04
gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens]        41   5e-04
gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1 [...    41   5e-04
gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Ho...    41   5e-04
gi|222144317 Ras-related protein RAB34 isoform 4 [Homo sapiens]        41   7e-04
gi|222144313 Ras-related protein RAB34 isoform 2 [Homo sapiens]        41   7e-04
gi|8922601 ADP-ribosylation factor-like 10C [Homo sapiens]             41   7e-04
gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo sa...    40   9e-04
gi|4885581 Rho family GTPase 2 [Homo sapiens]                          40   0.001
gi|4885069 ras homolog gene family, member E [Homo sapiens]            40   0.001
gi|13376574 ADP-ribosylation factor-like 14 [Homo sapiens]             40   0.001
gi|4502209 ADP-ribosylation factor 5 [Homo sapiens]                    40   0.001
gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo sa...    39   0.002
gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens]               39   0.002
gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]           39   0.002
gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]           39   0.002
gi|7657514 GTP-binding protein RHO6 [Homo sapiens]                     39   0.003
gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]           39   0.003
gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]          39   0.003
gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]           38   0.004
gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo sap...    38   0.006
gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]           38   0.006
gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]           38   0.006

>gi|12232463 RAB, member RAS oncogene family-like 5 isoform a [Homo
           sapiens]
          Length = 185

 Score =  384 bits (987), Expect = e-107
 Identities = 185/185 (100%), Positives = 185/185 (100%)

Query: 1   MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE 60
           MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE
Sbjct: 1   MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE 60

Query: 61  LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 120
           LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI
Sbjct: 61  LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 120

Query: 121 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 180
           AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE
Sbjct: 121 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 180

Query: 181 MSIMT 185
           MSIMT
Sbjct: 181 MSIMT 185


>gi|195546889 RAB, member RAS oncogene family-like 5 isoform b [Homo
           sapiens]
          Length = 155

 Score =  301 bits (772), Expect = 2e-82
 Identities = 155/185 (83%), Positives = 155/185 (83%), Gaps = 30/185 (16%)

Query: 1   MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE 60
           MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVR                     
Sbjct: 1   MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVR--------------------- 39

Query: 61  LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 120
                    FESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI
Sbjct: 40  ---------FESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 90

Query: 121 AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 180
           AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE
Sbjct: 91  AHHKPGSGDDKGSLSLSPPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREE 150

Query: 181 MSIMT 185
           MSIMT
Sbjct: 151 MSIMT 155


>gi|195546894 RAB, member RAS oncogene family-like 5 isoform c [Homo
           sapiens]
          Length = 108

 Score =  222 bits (566), Expect = 1e-58
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 78  MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 137
           MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS
Sbjct: 1   MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60

Query: 138 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 185
           PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT
Sbjct: 61  PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108


>gi|195546891 RAB, member RAS oncogene family-like 5 isoform c [Homo
           sapiens]
          Length = 108

 Score =  222 bits (566), Expect = 1e-58
 Identities = 108/108 (100%), Positives = 108/108 (100%)

Query: 78  MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 137
           MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS
Sbjct: 1   MKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHKPGSGDDKGSLSLS 60

Query: 138 PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 185
           PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT
Sbjct: 61  PPLNKLKLVHSNLEDDPEEIRMEFIKYLKSIINSMSESRDREEMSIMT 108


>gi|34147513 RAB7, member RAS oncogene family [Homo sapiens]
          Length = 207

 Score = 43.9 bits (102), Expect = 8e-05
 Identities = 29/112 (25%), Positives = 50/112 (44%), Gaps = 5/112 (4%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWDC 64
           K++ +G    GKT L N         +Y  T G    +F    V  +++      ++WD 
Sbjct: 10  KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGA---DFLTKEVMVDDRLV--TMQIWDT 64

Query: 65  GGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQ 116
            G  +F+S   A  + A   V+VF+   P+  K ++ W   F+ Q S +D +
Sbjct: 65  AGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPE 116


>gi|20270343 ADP-ribosylation factor-like 8A [Homo sapiens]
          Length = 186

 Score = 42.0 bits (97), Expect = 3e-04
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 11/129 (8%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWDC 64
           ++  VG   SGKT   N +       +  PT G  + +    +VT          +LWD 
Sbjct: 22  ELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRKITKGNVT---------IKLWDI 72

Query: 65  GGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHK 124
           GG  +F S W    +    +V + +A      +  +      + +P LQ    +++ + +
Sbjct: 73  GGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKR 132

Query: 125 --PGSGDDK 131
             PG+ D+K
Sbjct: 133 DLPGALDEK 141


>gi|222144319 Ras-related protein RAB34 isoform 5 [Homo sapiens]
          Length = 316

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 4   AKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWD 63
           +K++ VG    GKT L N   + +    Y  T GV   E E   V     G     +LWD
Sbjct: 110 SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVL----GIPFSLQLWD 164

Query: 64  CGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHH 123
             G  +F+       + A  ++IVFN +  +  +  + W +  +++         L+   
Sbjct: 165 TAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSK 224

Query: 124 K 124
           K
Sbjct: 225 K 225


>gi|222144315 Ras-related protein RAB34 isoform 3 [Homo sapiens]
          Length = 268

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 4   AKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWD 63
           +K++ VG    GKT L N   + +    Y  T GV   E E   V     G     +LWD
Sbjct: 111 SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVL----GIPFSLQLWD 165

Query: 64  CGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHH 123
             G  +F+       + A  ++IVFN +  +  +  + W +  +++         L+   
Sbjct: 166 TAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSK 225

Query: 124 K 124
           K
Sbjct: 226 K 226


>gi|222144311 Ras-related protein RAB34 isoform 1 [Homo sapiens]
          Length = 259

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 5/121 (4%)

Query: 4   AKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWD 63
           +K++ VG    GKT L N   + +    Y  T GV   E E   V     G     +LWD
Sbjct: 53  SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVL----GIPFSLQLWD 107

Query: 64  CGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHH 123
             G  +F+       + A  ++IVFN +  +  +  + W +  +++         L+   
Sbjct: 108 TAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQWLADALKENDPSSVLLFLVGSK 167

Query: 124 K 124
           K
Sbjct: 168 K 168


>gi|208609962 RAB7, member RAS oncogene family-like 1 isoform 1
           [Homo sapiens]
          Length = 203

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGV----RILEFENPHVTSNNKGTGCEFE 60
           K+L VG    GKT L    ++ S    Y  T GV    ++L++ +  +           +
Sbjct: 9   KVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIV--------RLQ 60

Query: 61  LWDCGGDAKFESCWPALMKDAHGVVIVF---NADIPSHRKEMEMWYSCFVQQPSLQDTQC 117
           LWD  G  +F S      +DA   VI+F   NA   S+ +  +      +  P+ +   C
Sbjct: 61  LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120

Query: 118 MLIAH 122
           +L+A+
Sbjct: 121 LLLAN 125


>gi|4506375 RAB7, member RAS oncogene family-like 1 isoform 1 [Homo
           sapiens]
          Length = 203

 Score = 41.2 bits (95), Expect = 5e-04
 Identities = 32/125 (25%), Positives = 54/125 (43%), Gaps = 15/125 (12%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGV----RILEFENPHVTSNNKGTGCEFE 60
           K+L VG    GKT L    ++ S    Y  T GV    ++L++ +  +           +
Sbjct: 9   KVLVVGDAAVGKTSLVQRYSQDSFSKHYKSTVGVDFALKVLQWSDYEIV--------RLQ 60

Query: 61  LWDCGGDAKFESCWPALMKDAHGVVIVF---NADIPSHRKEMEMWYSCFVQQPSLQDTQC 117
           LWD  G  +F S      +DA   VI+F   NA   S+ +  +      +  P+ +   C
Sbjct: 61  LWDIAGQERFTSMTRLYYRDASACVIMFDVTNATTFSNSQRWKQDLDSKLTLPNGEPVPC 120

Query: 118 MLIAH 122
           +L+A+
Sbjct: 121 LLLAN 125


>gi|222144317 Ras-related protein RAB34 isoform 4 [Homo sapiens]
          Length = 251

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 4   AKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWD 63
           +K++ VG    GKT L N   + +    Y  T GV   E E   V     G     +LWD
Sbjct: 53  SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVL----GIPFSLQLWD 107

Query: 64  CGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
             G  +F+       + A  ++IVFN +  +  +  + W
Sbjct: 108 TAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQW 146


>gi|222144313 Ras-related protein RAB34 isoform 2 [Homo sapiens]
          Length = 308

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 5/99 (5%)

Query: 4   AKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWD 63
           +K++ VG    GKT L N   + +    Y  T GV   E E   V     G     +LWD
Sbjct: 110 SKVIVVGDLSVGKTCLINRFCKDTFDKNYKATIGVDF-EMERFEVL----GIPFSLQLWD 164

Query: 64  CGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
             G  +F+       + A  ++IVFN +  +  +  + W
Sbjct: 165 TAGQERFKCIASTYYRGAQAIIIVFNLNDVASLEHTKQW 203


>gi|8922601 ADP-ribosylation factor-like 10C [Homo sapiens]
          Length = 186

 Score = 40.8 bits (94), Expect = 7e-04
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 19/133 (14%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWDC 64
           ++  VG   SGKT   N +       +  PT G  + +    +VT          ++WD 
Sbjct: 22  ELTLVGLQYSGKTTFVNVIASGQFSEDMIPTVGFNMRKVTKGNVT---------IKIWDI 72

Query: 65  GGDAKFESCWPALMKDAHGVVIVFNA----DIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 120
           GG  +F S W    +  + +V + +A     I + R E+       + +P LQ    +++
Sbjct: 73  GGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNELHN----LLDKPQLQGIPVLVL 128

Query: 121 AHHK--PGSGDDK 131
            + +  P + D+K
Sbjct: 129 GNKRDLPNALDEK 141


>gi|19923231 RAB6A, member RAS oncogene family isoform a [Homo
           sapiens]
          Length = 208

 Score = 40.4 bits (93), Expect = 9e-04
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 3   KAKILFVGPCESGKT-VLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61
           K K++F+G    GKT ++  F+ +S D T Y  T G+  L       T   +      +L
Sbjct: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLS-----KTMYLEDRTIRLQL 66

Query: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
           WD  G  +F S  P+ ++D+   V+V++    +  ++   W
Sbjct: 67  WDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 107


>gi|4885581 Rho family GTPase 2 [Homo sapiens]
          Length = 227

 Score = 40.0 bits (92), Expect = 0.001
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 3  KAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELW 62
          + KI+ VG  E GKT L     + +    Y PT       FEN   +        E  +W
Sbjct: 7  RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPT------VFENYTASFEIDKRRIELNMW 60

Query: 63 DCGGDAKFESCWPALMKDAHGVVIVFNADIP 93
          D  G + +++  P    D+  V+I F+   P
Sbjct: 61 DTSGSSYYDNVRPLAYPDSDAVLICFDISRP 91


>gi|4885069 ras homolog gene family, member E [Homo sapiens]
          Length = 244

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 6/92 (6%)

Query: 2   LKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61
           +K KI+ VG  + GKT L +   +      Y PT       FEN   +        E  L
Sbjct: 22  VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPT------VFENYTASFEIDTQRIELSL 75

Query: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIP 93
           WD  G   +++  P    D+  V+I F+   P
Sbjct: 76  WDTSGSPYYDNVRPLSYPDSDAVLICFDISRP 107


>gi|13376574 ADP-ribosylation factor-like 14 [Homo sapiens]
          Length = 192

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 15/129 (11%)

Query: 3   KAKILFVGPCESGKTVLANFLTESSDITEYSPTQG--VRILEFENPHVTSNNKGTGCEFE 60
           +A++L +G   +GK+ L   L  + DIT   PT G  V ++E E                
Sbjct: 13  QAQVLLLGLDSAGKSTLLYKLKLAKDITTI-PTIGFNVEMIELER----------NLSLT 61

Query: 61  LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLI 120
           +WD GG  K  + W    ++  G+V V ++      +E +  +   ++   +++   +L+
Sbjct: 62  VWDVGGQEKMRTVWGCYCENTDGLVYVVDSTDKQRLEESQRQFEHILKNEHIKNVPVVLL 121

Query: 121 AHHK--PGS 127
           A+ +  PG+
Sbjct: 122 ANKQDMPGA 130


>gi|4502209 ADP-ribosylation factor 5 [Homo sapiens]
          Length = 180

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 32/143 (22%), Positives = 61/143 (42%), Gaps = 14/143 (9%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWDC 64
           +IL VG   +GKT +  +  +  +I    PT G  +   E  ++          F +WD 
Sbjct: 19  RILMVGLDAAGKTTIL-YKLKLGEIVTTIPTIGFNVETVEYKNIC---------FTVWDV 68

Query: 65  GGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAHHK 124
           GG  K    W    ++  G++ V +++     +E        +Q+  L+D   ++ A+ +
Sbjct: 69  GGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQ 128

Query: 125 PGSGDDKGSLSLSPPLNKLKLVH 147
               D   ++ +S   +KL L H
Sbjct: 129 ----DMPNAMPVSELTDKLGLQH 147


>gi|38679888 RAB6A, member RAS oncogene family isoform b [Homo
           sapiens]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 3   KAKILFVGPCESGKT-VLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61
           K K++F+G    GKT ++  F+ +S D T Y  T G+  L       T   +      +L
Sbjct: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLS-----KTMYLEDRTVRLQL 66

Query: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
           WD  G  +F S  P+ ++D+   V+V++    +  ++   W
Sbjct: 67  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 107


>gi|4757774 ADP-ribosylation factor-like 3 [Homo sapiens]
          Length = 182

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 13/98 (13%)

Query: 3   KAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELW 62
           + +IL +G   +GKT L   L  S DI+  +PTQG  I   ++          G +  +W
Sbjct: 17  EVRILLLGLDNAGKTTLLKQLA-SEDISHITPTQGFNIKSVQSQ---------GFKLNVW 66

Query: 63  DCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEME 100
           D GG  K    W    ++   ++ V ++   + RK  E
Sbjct: 67  DIGGQRKIRPYWKNYFENTDILIYVIDS---ADRKRFE 101


>gi|96975097 RAB6B, member RAS oncogene family [Homo sapiens]
          Length = 208

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 7/101 (6%)

Query: 3   KAKILFVGPCESGKT-VLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFEL 61
           K K++F+G    GKT ++  F+ +S D T Y  T G+  L       T   +      +L
Sbjct: 13  KFKLVFLGEQSVGKTSLITRFMYDSFDNT-YQATIGIDFLS-----KTMYLEDRTVRLQL 66

Query: 62  WDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
           WD  G  +F S  P+ ++D+   V+V++    +  ++   W
Sbjct: 67  WDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKW 107


>gi|74096429 RAB41, member RAS oncogene family [Homo sapiens]
          Length = 222

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 26/102 (25%), Positives = 47/102 (46%), Gaps = 5/102 (4%)

Query: 1   MLKAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFE 60
           + K+K+LF+G    GKT + +    +S       T G+  L       T   +    + +
Sbjct: 29  LCKSKLLFLGEQSVGKTSIISRFMYNSFGCACQATVGIDFLS-----KTMYLEDQIVQLQ 83

Query: 61  LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
           LWD  G  +F S  P+ ++D+   V+V++    +  KE + W
Sbjct: 84  LWDTAGQERFHSLIPSYIRDSTIAVVVYDITNINSFKETDKW 125


>gi|7657514 GTP-binding protein RHO6 [Homo sapiens]
          Length = 232

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 3  KAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELW 62
          + K++ VG  + GKT +   L +      Y PT       FEN       +    E  LW
Sbjct: 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV------FENYTACLETEEQRVELSLW 66

Query: 63 DCGGDAKFESCWPALMKDAHGVVIVFNADIP 93
          D  G   +++  P    D+  V++ F+   P
Sbjct: 67 DTSGSPYYDNVRPLCYSDSDAVLLCFDISRP 97


>gi|10880989 RAB18, member RAS oncogene family [Homo sapiens]
          Length = 206

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 27/118 (22%), Positives = 54/118 (45%), Gaps = 5/118 (4%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWDC 64
           KIL +G    GK+ L    T+ +   E + T GV   +F+   ++ +  G   +  +WD 
Sbjct: 10  KILIIGESGVGKSSLLLRFTDDTFDPELAATIGV---DFKVKTISVD--GNKAKLAIWDT 64

Query: 65  GGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAH 122
            G  +F +  P+  + A GV++V++        +++ W +      +  D   ML+ +
Sbjct: 65  AGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGN 122


>gi|106507164 RAB12, member RAS oncogene family [Homo sapiens]
          Length = 244

 Score = 38.5 bits (88), Expect = 0.003
 Identities = 25/120 (20%), Positives = 53/120 (44%), Gaps = 6/120 (5%)

Query: 3   KAKILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELW 62
           K +++ +G    GKT L    T+ +       T GV   +F+    T   +G     ++W
Sbjct: 42  KLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGV---DFKIK--TVELRGKKIRLQIW 96

Query: 63  DCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQCMLIAH 122
           D  G  +F S   A  + A G+++V++        ++  W    + + + +D + +L+ +
Sbjct: 97  DTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMK-MIDKYASEDAELLLVGN 155


>gi|38490537 RAB7B, member RAS oncogene family [Homo sapiens]
          Length = 199

 Score = 38.1 bits (87), Expect = 0.004
 Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 5/98 (5%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTGCEFELWDC 64
           K++ VG    GKT L +     +   EY  T G  IL   +  +   +  T  + ++WD 
Sbjct: 10  KLIIVGAIGVGKTSLPHQYVHKTFYEEYQTTLGASIL---SKIIILGD--TTLKLQIWDT 64

Query: 65  GGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
           GG  +F S      K + G ++ F+       + +++W
Sbjct: 65  GGQERFRSMVSTFYKGSDGCILAFDVTDLESFEALDIW 102


>gi|4758988 RAB1A, member RAS oncogene family isoform 1 [Homo
           sapiens]
          Length = 205

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGV----RILEFENPHVTSNNKGTGCEFE 60
           K+L +G    GK+ L     + +    Y  T GV    R +E +         G   + +
Sbjct: 13  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD---------GKTIKLQ 63

Query: 61  LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
           +WD  G  +F +   +  + AHG+++V++         ++ W
Sbjct: 64  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 105


>gi|13569962 RAB1B, member RAS oncogene family [Homo sapiens]
          Length = 201

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 22/102 (21%), Positives = 43/102 (42%), Gaps = 13/102 (12%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGV----RILEFENPHVTSNNKGTGCEFE 60
           K+L +G    GK+ L     + +    Y  T GV    R +E +         G   + +
Sbjct: 10  KLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD---------GKTIKLQ 60

Query: 61  LWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMW 102
           +WD  G  +F +   +  + AHG+++V++         ++ W
Sbjct: 61  IWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW 102


>gi|5729997 RAB27B, member RAS oncogene family [Homo sapiens]
          Length = 218

 Score = 37.7 bits (86), Expect = 0.006
 Identities = 28/126 (22%), Positives = 49/126 (38%), Gaps = 11/126 (8%)

Query: 5   KILFVGPCESGKTVLANFLTESSDITEYSPTQGVRILEFENPHVTSNNKGTG-------- 56
           K+L +G    GKT      T++    ++  T G+   +F    V  N +G          
Sbjct: 11  KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGI---DFREKRVVYNAQGPNGSSGKAFK 67

Query: 57  CEFELWDCGGDAKFESCWPALMKDAHGVVIVFNADIPSHRKEMEMWYSCFVQQPSLQDTQ 116
              +LWD  G  +F S   A  +DA G +++F+         +  W S        ++  
Sbjct: 68  VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD 127

Query: 117 CMLIAH 122
            +LI +
Sbjct: 128 IVLIGN 133


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,385,554
Number of Sequences: 37866
Number of extensions: 327464
Number of successful extensions: 930
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 815
Number of HSP's gapped (non-prelim): 163
length of query: 185
length of database: 18,247,518
effective HSP length: 96
effective length of query: 89
effective length of database: 14,612,382
effective search space: 1300501998
effective search space used: 1300501998
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.