Guide to the Human Genome
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Name: RAB7L1 Sequence: fasta or formatted (203aa) NCBI GI: 208609962
Description:

RAB7, member RAS oncogene family-like 1 isoform 1

Referenced in:

Rab

Other entries for this name:
alt prot [179aa] RAB7, member RAS oncogene family-like 1 isoform 2
alt prot [131aa] RAB7, member RAS oncogene family-like 1 isoform 3
alt mRNA [203aa] RAB7, member RAS oncogene family-like 1 isoform 1
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.9         10           2
 C cysteine            2.5          5           2
 D aspartate           7.4         15           1
 E glutamate           4.4          9           1
 F phenylalanine       3.9          8           1
 G glycine             4.4          9           1
 H histidine           1.0          2           1
 I isoleucine          3.9          8           1
 K lysine              6.4         13           1
 L leucine             8.9         18           3
 M methionine          3.4          7           2
 N asparagine          4.9         10           1
 P proline             2.0          4           1
 Q glutamine           4.9         10           1
 R arginine            5.4         11           1
 S serine             11.3         23           3
 T threonine           6.9         14           2
 V valine              7.4         15           2
 W tryptophan          3.0          6           1
 Y tyrosine            3.0          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB7, member RAS oncogene family-like 1 isoform 1 [... 
RAB7L1                1.000   RAB7, member RAS oncogene family-like 1 isoform 1 [Ho...
RAB7L1                0.841   RAB7, member RAS oncogene family-like 1 isoform 2 [...
RAB7L1                0.635   RAB7, member RAS oncogene family-like 1 isoform 3 [...
RAB32                 0.494   RAB32, member RAS oncogene family 
RAB38                 0.483   RAB38 
RAB13                 0.270   RAB13, member RAS oncogene family 
LOC100131294          0.267   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.267   PREDICTED: similar to hCG24991 
LOC100131294          0.267   PREDICTED: similar to hCG24991 
RAB9A                 0.262   RAB9A, member RAS oncogene family 
RAB10                 0.254   ras-related GTP-binding protein RAB10 
RAB35                 0.252   RAB35, member RAS oncogene family 
RAB43                 0.252   RAB43 protein 
RAB12                 0.252   RAB12, member RAS oncogene family 
RAB1A                 0.249   RAB1A, member RAS oncogene family isoform 1 
RAB23                 0.249   Ras-related protein Rab-23 
RAB8B                 0.249   RAB8B, member RAS oncogene family 
RAB23                 0.249   Ras-related protein Rab-23 
RAB7A                 0.247   RAB7, member RAS oncogene family 
RAB8A                 0.244   mel transforming oncogene 
RAB3A                 0.242   RAB3A, member RAS oncogene family 
RAB3C                 0.239   RAB3C, member RAS oncogene family 
RAB11A                0.239   Ras-related protein Rab-11A 
RAB3D                 0.237   RAB3D, member RAS oncogene family 
RAB1B                 0.234   RAB1B, member RAS oncogene family 
RAB11B                0.231   RAB11B, member RAS oncogene family 
RAB6A                 0.231   RAB6A, member RAS oncogene family isoform a 
RAB19                 0.229   RAB19, member RAS oncogene family 
RAB6A                 0.229   RAB6A, member RAS oncogene family isoform b 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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