Guide to the Human Genome
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Name: RND1 Sequence: fasta or formatted (232aa) NCBI GI: 7657514
Description:

GTP-binding protein RHO6

Referenced in:

Rho and Rac
Receptor Tyrosine Kinases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         14           1
 C cysteine            4.7         11           1
 D aspartate           4.7         11           1
 E glutamate           6.9         16           2
 F phenylalanine       2.2          5           1
 G glycine             3.0          7           1
 H histidine           1.3          3           1
 I isoleucine          4.3         10           1
 K lysine              7.3         17           2
 L leucine            12.1         28           2
 M methionine          2.2          5           1
 N asparagine          1.3          3           1
 P proline             6.0         14           1
 Q glutamine           3.9          9           1
 R arginine            5.6         13           2
 S serine             11.2         26           2
 T threonine           6.5         15           1
 V valine              6.0         14           2
 W tryptophan          0.9          2           1
 Y tyrosine            3.9          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   GTP-binding protein RHO6 
RND3                  0.623   ras homolog gene family, member E 
RND2                  0.508   Rho family GTPase 2 
RHOA                  0.321   ras homolog gene family, member A 
RHOC                  0.316   ras homolog gene family, member C precursor 
RHOC                  0.316   ras homolog gene family, member C precursor 
RHOC                  0.316   ras homolog gene family, member C precursor 
RHOB                  0.316   ras homolog gene family, member B 
RHOD                  0.296   ras homolog D 
RHOF                  0.287   ras homolog gene family, member F 
RAC2                  0.280   ras-related C3 botulinum toxin substrate 2 
RAC1                  0.275   ras-related C3 botulinum toxin substrate 1 isoform Ra...
RAC3                  0.275   ras-related C3 botulinum toxin substrate 3 (rho famil...
RHOG                  0.262   ras homolog gene family, member G 
RAC1                  0.251   ras-related C3 botulinum toxin substrate 1 isoform Ra...
RHOQ                  0.251   ras-like protein TC10 
RHOJ                  0.244   ras homolog gene family, member J 
CDC42                 0.242   cell division cycle 42 isoform 1 
CDC42                 0.242   cell division cycle 42 isoform 1 
RHOU                  0.239   ras homolog gene family, member U 
CDC42                 0.239   cell division cycle 42 isoform 2 
RHOV                  0.212   ras homolog gene family, member V 
RHOH                  0.174   ras homolog gene family, member H 
RHOBTB1               0.153   Rho-related BTB domain containing 1 
RHOBTB2               0.144   Rho-related BTB domain containing 2 isoform 3 [Homo...
RHOBTB2               0.144   Rho-related BTB domain containing 2 isoform 2 [Homo...
RHOBTB2               0.144   Rho-related BTB domain containing 2 isoform 1 [Homo...
RAB19                 0.106   RAB19, member RAS oncogene family 
RAB3C                 0.099   RAB3C, member RAS oncogene family 
RAB12                 0.099   RAB12, member RAS oncogene family 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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