Guide to the Human Genome
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Name: RAB6B Sequence: fasta or formatted (208aa) NCBI GI: 96975097
Description:

RAB6B, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.8         10           1
 C cysteine            1.0          2           1
 D aspartate           7.2         15           2
 E glutamate           6.7         14           2
 F phenylalanine       4.8         10           1
 G glycine             7.2         15           2
 H histidine           0.0          0           0
 I isoleucine          6.7         14           2
 K lysine              6.7         14           1
 L leucine             7.7         16           1
 M methionine          3.4          7           1
 N asparagine          3.4          7           1
 P proline             2.9          6           2
 Q glutamine           5.3         11           2
 R arginine            6.2         13           2
 S serine              8.2         17           1
 T threonine           7.2         15           1
 V valine              6.7         14           3
 W tryptophan          1.0          2           1
 Y tyrosine            2.9          6           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB6B, member RAS oncogene family 
RAB6A                 0.928   RAB6A, member RAS oncogene family isoform b 
RAB6A                 0.917   RAB6A, member RAS oncogene family isoform a 
RAB6C                 0.829   RAB6C, member RAS oncogene family 
LOC150786             0.827   RAB6C-like 
RAB41                 0.607   RAB41, member RAS oncogene family 
RAB5A                 0.372   RAB5A, member RAS oncogene family 
RAB5C                 0.372   RAB5C, member RAS oncogene family isoform a 
RAB5C                 0.372   RAB5C, member RAS oncogene family isoform b 
RAB5B                 0.349   RAB5B, member RAS oncogene family 
RAB8B                 0.326   RAB8B, member RAS oncogene family 
RAB43                 0.323   RAB43 protein 
RAB2A                 0.320   RAB2A, member RAS oncogene family 
RAB10                 0.318   ras-related GTP-binding protein RAB10 
RAB3C                 0.315   RAB3C, member RAS oncogene family 
RAB8A                 0.315   mel transforming oncogene 
RAB3D                 0.315   RAB3D, member RAS oncogene family 
RAB31                 0.315   RAB31, member RAS oncogene family 
RAB37                 0.310   RAB37, member RAS oncogene family isoform 3 
RAB3A                 0.310   RAB3A, member RAS oncogene family 
RAB2B                 0.310   RAB2B protein isoform 1 
RAB37                 0.307   RAB37, member RAS oncogene family isoform 2 
RAB13                 0.307   RAB13, member RAS oncogene family 
RAB1B                 0.305   RAB1B, member RAS oncogene family 
RAB22A                0.302   RAS-related protein RAB-22A 
RAB3B                 0.302   RAB3B, member RAS oncogene family 
RAB26                 0.302   RAB26, member RAS oncogene family 
LOC100131294          0.300   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.300   PREDICTED: similar to hCG24991 
LOC100131294          0.300   PREDICTED: similar to hCG24991 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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