Guide to the Human Genome
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Name: RAB7B Sequence: fasta or formatted (199aa) NCBI GI: 38490537
Description:

RAB7B, member RAS oncogene family

Referenced in:

Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.5         11           1
 C cysteine            2.0          4           2
 D aspartate           6.5         13           1
 E glutamate           6.0         12           2
 F phenylalanine       3.5          7           1
 G glycine             6.0         12           2
 H histidine           1.5          3           1
 I isoleucine          8.0         16           3
 K lysine              7.0         14           2
 L leucine            10.1         20           2
 M methionine          2.5          5           1
 N asparagine          2.5          5           1
 P proline             3.5          7           1
 Q glutamine           5.0         10           1
 R arginine            5.0         10           1
 S serine              8.0         16           1
 T threonine           5.0         10           2
 V valine              7.0         14           2
 W tryptophan          1.5          3           1
 Y tyrosine            3.5          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB7B, member RAS oncogene family 
RAB7A                 0.420   RAB7, member RAS oncogene family 
RAB9A                 0.318   RAB9A, member RAS oncogene family 
RAB9B                 0.310   RAB9B, member RAS oncogene family 
RAB32                 0.259   RAB32, member RAS oncogene family 
RAB23                 0.259   Ras-related protein Rab-23 
RAB23                 0.259   Ras-related protein Rab-23 
RAB4A                 0.257   RAB4A, member RAS oncogene family 
RAB1A                 0.251   RAB1A, member RAS oncogene family isoform 1 
RAB1B                 0.251   RAB1B, member RAS oncogene family 
RAB6B                 0.251   RAB6B, member RAS oncogene family 
LOC100131294          0.249   PREDICTED: similar to RAB13, member RAS oncogene fa...
LOC100131294          0.249   PREDICTED: similar to hCG24991 
LOC100131294          0.249   PREDICTED: similar to hCG24991 
RAB6A                 0.243   RAB6A, member RAS oncogene family isoform a 
RAB6A                 0.241   RAB6A, member RAS oncogene family isoform b 
RAB13                 0.241   RAB13, member RAS oncogene family 
RAB5B                 0.238   RAB5B, member RAS oncogene family 
RAB35                 0.238   RAB35, member RAS oncogene family 
RAB4B                 0.238   ras-related GTP-binding protein 4b 
RAB3B                 0.233   RAB3B, member RAS oncogene family 
RAB5A                 0.233   RAB5A, member RAS oncogene family 
RAB12                 0.233   RAB12, member RAS oncogene family 
RAB30                 0.233   RAB30, member RAS oncogene family 
RAB3C                 0.230   RAB3C, member RAS oncogene family 
RAB2B                 0.227   RAB2B protein isoform 1 
RAB38                 0.227   RAB38 
RAB14                 0.227   GTPase Rab14 
RAB3D                 0.227   RAB3D, member RAS oncogene family 
RAB5C                 0.227   RAB5C, member RAS oncogene family isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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