Guide to the Human Genome
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Name: RABL5 Sequence: fasta or formatted (155aa) NCBI GI: 195546889
Description:

RAB, member RAS oncogene family-like 5 isoform b

Referenced in:

Rab

Other entries for this name:
alt prot [185aa] RAB, member RAS oncogene family-like 5 isoform a
alt prot [108aa] RAB, member RAS oncogene family-like 5 isoform c
alt prot [108aa] RAB, member RAS oncogene family-like 5 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             3.9          6           1
 C cysteine            2.6          4           1
 D aspartate           5.8          9           2
 E glutamate           8.4         13           2
 F phenylalanine       3.9          6           1
 G glycine             4.5          7           1
 H histidine           3.2          5           2
 I isoleucine          6.5         10           2
 K lysine              7.1         11           1
 L leucine             9.0         14           1
 M methionine          5.8          9           1
 N asparagine          3.2          5           1
 P proline             5.8          9           2
 Q glutamine           3.2          5           2
 R arginine            3.2          5           1
 S serine             11.6         18           2
 T threonine           3.9          6           1
 V valine              5.2          8           2
 W tryptophan          1.3          2           1
 Y tyrosine            1.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RAB, member RAS oncogene family-like 5 isoform b [H... 
RABL5                 0.945   RAB, member RAS oncogene family-like 5 isoform a [Ho...
RABL5                 0.675   RAB, member RAS oncogene family-like 5 isoform c [H...
RABL5                 0.675   RAB, member RAS oncogene family-like 5 isoform c [H...
RAB7L1                0.027   RAB7, member RAS oncogene family-like 1 isoform 2 [...
PADI1                 0.024   peptidylarginine deiminase type I 
LOC100128613          0.021   PREDICTED: hypothetical protein 
LOC100128613          0.021   PREDICTED: hypothetical protein 
LOC100128613          0.021   PREDICTED: hypothetical protein 
LOC100128613          0.021   PREDICTED: hypothetical protein 
RAB7A                 0.021   RAB7, member RAS oncogene family 
LOC100129981          0.017   PREDICTED: similar to keratin 17 
LOC729445             0.017   PREDICTED: similar to keratin 17 
LOC729242             0.017   PREDICTED: similar to keratin 17 
LOC100129981          0.017   PREDICTED: similar to keratin 17 
AKD1                  0.014   adenylate kinase domain containing 1 isoform 1 [Hom...
DST                   0.014   dystonin isoform 4 
DST                   0.014   dystonin isoform 3 
DST                   0.014   dystonin isoform 2 
DST                   0.014   dystonin isoform 1 
DST                   0.014   dystonin isoform 1eB precursor 
DST                   0.014   dystonin isoform 1eA precursor 
DST                   0.014   dystonin isoform 1e precursor 
CLPX                  0.014   ClpX caseinolytic protease X homolog 
ARL3                  0.014   ADP-ribosylation factor-like 3 
ARL13B                0.010   ADP-ribosylation factor-like 2-like 1 isoform 1 [Hom...
PLXNA4                0.010   plexin A4 isoform 1 
PLXNA2                0.010   plexin A2 
PLXNC1                0.010   plexin C1 
LOC100293499          0.007   PREDICTED: similar to hCG1737379 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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