Guide to the Human Genome
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Name: ARF5 Sequence: fasta or formatted (180aa) NCBI GI: 4502209
Description:

ADP-ribosylation factor 5

Referenced in:

ADP-Ribosylation Factors
Rab

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.0          9           2
 C cysteine            1.1          2           1
 D aspartate           6.7         12           1
 E glutamate           5.6         10           1
 F phenylalanine       3.9          7           1
 G glycine             7.2         13           2
 H histidine           1.7          3           1
 I isoleucine          5.0          9           1
 K lysine              6.1         11           2
 L leucine            12.2         22           2
 M methionine          3.3          6           1
 N asparagine          3.3          6           1
 P proline             2.2          4           1
 Q glutamine           6.1         11           1
 R arginine            5.6         10           1
 S serine              4.4          8           1
 T threonine           7.8         14           2
 V valine              7.8         14           2
 W tryptophan          2.2          4           1
 Y tyrosine            2.8          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   ADP-ribosylation factor 5 
ARF4                  0.917   ADP-ribosylation factor 4 
ARF1                  0.808   ADP-ribosylation factor 1 
ARF1                  0.808   ADP-ribosylation factor 1 
ARF1                  0.808   ADP-ribosylation factor 1 
ARF1                  0.808   ADP-ribosylation factor 1 
ARF3                  0.794   ADP-ribosylation factor 3 
ARF6                  0.655   ADP-ribosylation factor 6 
ARL1                  0.563   ADP-ribosylation factor-like 1 
TRIM23                0.537   ADP-ribosylation factor domain protein 1 isoform alph...
TRIM23                0.463   ADP-ribosylation factor domain protein 1 isoform bet...
TRIM23                0.445   ADP-ribosylation factor domain protein 1 isoform gam...
ARL5A                 0.428   ADP-ribosylation factor-like 5A isoform 1 
ARL5B                 0.425   ADP-ribosylation factor-like 8 
ARL2                  0.419   ADP-ribosylation factor-like 2 
ARL14                 0.404   ADP-ribosylation factor-like 14 
ARL3                  0.395   ADP-ribosylation factor-like 3 
ARL4C                 0.389   ADP-ribosylation factor-like 4C 
ARL4A                 0.375   ADP-ribosylation factor-like 4A 
ARL4A                 0.375   ADP-ribosylation factor-like 4A 
ARL4A                 0.375   ADP-ribosylation factor-like 4A 
ARL4D                 0.345   ADP-ribosylation factor-like 4D 
ARL5A                 0.336   ADP-ribosylation factor-like 5A isoform 2 
ARL5A                 0.336   ADP-ribosylation factor-like 5A isoform 2 
ARL5C                 0.333   ADP-ribosylation factor-like 5C 
ARL11                 0.330   ADP-ribosylation factor-like 11 
ARL6                  0.310   ADP-ribosylation factor-like 6 
ARL6                  0.310   ADP-ribosylation factor-like 6 
ARL17                 0.289   ADP-ribosylation factor-like 17 isoform a 
ARL17P1               0.289   hypothetical protein LOC51326 isoform a 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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