Search of human proteins with 28872798

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
         (269 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]       552   e-157
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]        134   1e-31
gi|28872800 CCAAT/enhancer binding protein epsilon [Homo sapiens]     124   9e-29
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]       120   1e-27
gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens]         71   9e-13
gi|21361118 DNA-damage-inducible transcript 3 [Homo sapiens]           51   9e-07
gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]      49   6e-06
gi|14110395 X-box binding protein 1 isoform XBP1(U) [Homo sapiens]     48   1e-05
gi|118640873 X-box binding protein 1 isoform XBP1(S) [Homo sapiens]    48   1e-05
gi|110832843 TBP-associated factor 4 [Homo sapiens]                    47   2e-05
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    47   2e-05
gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]         47   2e-05
gi|149158690 HLA-B associated transcript-2 [Homo sapiens]              46   3e-05
gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]      46   4e-05
gi|55750053 atrophin-1 [Homo sapiens]                                  45   5e-05
gi|55750041 atrophin-1 [Homo sapiens]                                  45   5e-05
gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens]     45   5e-05
gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]             45   7e-05
gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]            45   9e-05
gi|194239643 activating transcription factor 7 isoform 3 [Homo s...    45   9e-05
gi|5802980 activating transcription factor 7 isoform 2 [Homo sap...    45   9e-05
gi|194239640 activating transcription factor 7 isoform 1 [Homo s...    45   9e-05
gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]            44   1e-04
gi|163965366 nascent polypeptide-associated complex alpha subuni...    44   1e-04
gi|8924246 basic leucine zipper transcription factor, ATF-like 3...    44   1e-04
gi|4885243 FOS-like antigen 1 [Homo sapiens]                           44   2e-04
gi|162329583 cleavage and polyadenylation specific factor 6, 68 ...    44   2e-04
gi|33286446 opioid growth factor receptor [Homo sapiens]               43   3e-04
gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Hom...    43   3e-04
gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Hom...    43   3e-04

>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
          Length = 269

 Score =  552 bits (1423), Expect = e-157
 Identities = 269/269 (100%), Positives = 269/269 (100%)

Query: 1   MSAALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID 60
           MSAALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID
Sbjct: 1   MSAALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID 60

Query: 61  FSAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLK 120
           FSAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLK
Sbjct: 61  FSAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLK 120

Query: 121 REPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREK 180
           REPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREK
Sbjct: 121 REPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREK 180

Query: 181 SAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQL 240
           SAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQL
Sbjct: 181 SAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQL 240

Query: 241 TRDLAGLRQFFKQLPSPPFLPAAGTADCR 269
           TRDLAGLRQFFKQLPSPPFLPAAGTADCR
Sbjct: 241 TRDLAGLRQFFKQLPSPPFLPAAGTADCR 269


>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
          Length = 345

 Score =  134 bits (336), Expect = 1e-31
 Identities = 107/324 (33%), Positives = 141/324 (43%), Gaps = 77/324 (23%)

Query: 1   MSAALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID 60
           M  A F  +     A +  + AP   P  A +PG     G LG  G       D E AID
Sbjct: 24  MEVANFYYEADCLAAAYGGKAAPAAPP--AARPGPRPPAGELGSIG-------DHERAID 74

Query: 61  FSAYIDSMAA----------------------VPTLELCHDELFADLFNSNHKAG----- 93
           FS Y++ + A                       P     H +  +DLF+ ++        
Sbjct: 75  FSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKP 134

Query: 94  -----------GAGPLELLPG--GPARPLGPGPAAPRLLKREPDWGDGD--------APG 132
                      GA    L PG   P  P  P P  P  LK EP +   D        APG
Sbjct: 135 AEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPG 194

Query: 133 S-------------------LLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPA 173
                                +P+  +    T  S +  G P+P  +  PP +      A
Sbjct: 195 GGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGA-A 253

Query: 174 PGPAREKSAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKL 233
           P P++ KS  K+  D+ S EY+ RRERNNIAVRKSRDKAK RN E Q K++EL+AENE+L
Sbjct: 254 PAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERL 313

Query: 234 HQRVEQLTRDLAGLRQFFKQLPSP 257
            ++VEQL+R+L+ LR  FKQLP P
Sbjct: 314 QKKVEQLSRELSTLRNLFKQLPEP 337


>gi|28872800 CCAAT/enhancer binding protein epsilon [Homo sapiens]
          Length = 281

 Score =  124 bits (311), Expect = 9e-29
 Identities = 111/287 (38%), Positives = 136/287 (47%), Gaps = 74/287 (25%)

Query: 13  RGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVP 72
           RG   P E    +  GRAG       PG LG+       M + E++ID SAYI+S     
Sbjct: 12  RGGQQPLE----FSGGRAG-------PGELGD-------MCEHEASIDLSAYIES----- 48

Query: 73  TLELCHDELFADLFNSNHKAGGAGPLELLPGGPARP-----------------------L 109
                 ++L +DLF         G     PG PA P                       L
Sbjct: 49  ----GEEQLLSDLFAVKPAPEARGLKG--PGTPAFPHYLPPDPRPFAYPPHTFGPDRKAL 102

Query: 110 GPG----PAA--PR--LLKREPDWGDGDAPGSL-----LPAQVAACAQTVV----SLAAA 152
           GPG    P +  PR   +K EP   +G    S      L  QVA C QT +    +LAA 
Sbjct: 103 GPGIYSSPGSYDPRAVAVKEEPRGPEGSRAASRGSYNPLQYQVAHCGQTAMHLPPTLAAP 162

Query: 153 GQP----TPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSPEYRQRRERNNIAVRKS 208
           GQP      P +   P  SP    AP PA     GK+  ++ S EYR RRERNNIAVRKS
Sbjct: 163 GQPLRVLKAPLATAAPPCSP-LLKAPSPAGPLHKGKKAVNKDSLEYRLRRERNNIAVRKS 221

Query: 209 RDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQFFKQLP 255
           RDKAKRR  E QQK++E  AENE+L  RVEQLT++L  LR  F+Q+P
Sbjct: 222 RDKAKRRILETQQKVLEYMAENERLRSRVEQLTQELDTLRNLFRQIP 268


>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
          Length = 358

 Score =  120 bits (302), Expect = 1e-27
 Identities = 115/349 (32%), Positives = 146/349 (41%), Gaps = 116/349 (33%)

Query: 16  PWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVPTLE 75
           P     A F  P  AG P +   P A  EP      + + E++ID SAYID  A      
Sbjct: 23  PHAPSSAAFGFPRGAG-PAQPPAPPAAPEP---LGGICEHETSIDISAYIDPAAF----- 73

Query: 76  LCHDELFADLFNSNHK------------AGGAGPLELLPGGPARPLG---PGPA------ 114
             +DE  ADLF  + +             GG G  +  PG PA P G   PG A      
Sbjct: 74  --NDEFLADLFQHSRQQEKAKAAVGPTGGGGGGDFDY-PGAPAGPGGAVMPGGAHGPPPG 130

Query: 115 -------------------------APRLLKREPDWGDGDAPGSL--------------- 134
                                     P ++K+EP   D     +L               
Sbjct: 131 YGCAAAGYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLFPYQPPPPPPPS 190

Query: 135 ---------------LPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPA------ 173
                          L  Q+A C QT + L   G PTPP +P P   SP   PA      
Sbjct: 191 HPHPHPPPAHLAAPHLQFQIAHCGQTTMHLQP-GHPTPPPTPVP---SPHPAPALGAAGL 246

Query: 174 PGPARE----------------KSAGK--RGPDRGSPEYRQRRERNNIAVRKSRDKAKRR 215
           PGP                     AGK  +  D+ S EYR RRERNNIAVRKSRDKAK+R
Sbjct: 247 PGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVRKSRDKAKQR 306

Query: 216 NQEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQFFKQLPSPPFLPAAG 264
           N E QQK++EL+++N++L +RVEQL+R+L  LR  F+QLP    + A G
Sbjct: 307 NVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMG 355


>gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens]
          Length = 150

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 41/102 (40%), Positives = 62/102 (60%), Gaps = 4/102 (3%)

Query: 150 AAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSPEYRQRRERNNIAVRKSR 209
           A+  Q  P   P  P    +   AP    +KS+     DR S EYRQRRERNN+AV+KSR
Sbjct: 25  ASGLQQVPQLVPAGPGGGGKAV-APSKQSKKSSPM---DRNSDEYRQRRERNNMAVKKSR 80

Query: 210 DKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQFF 251
            K+K++ Q+  Q++ +L  ENE+L  +++ LT++L+ L+  F
Sbjct: 81  LKSKQKAQDTLQRVNQLKEENERLEAKIKLLTKELSVLKDLF 122


>gi|21361118 DNA-damage-inducible transcript 3 [Homo sapiens]
          Length = 169

 Score = 51.2 bits (121), Expect = 9e-07
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 161 PEPPR-SSPRQTPAPGPAREKSAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEM 219
           PEP   +S  Q+P    + + S  +   +      R+R++  +   R  + + K + QE 
Sbjct: 68  PEPAEVTSTSQSPHSPDSSQSSLAQEEEEEDQGRTRKRKQSGHSPARAGKQRMKEKEQEN 127

Query: 220 QQKLVELSAENEKLHQRVEQLTRDLAGLRQ 249
           ++K+ +L+ ENE+L Q +E+LTR++   R+
Sbjct: 128 ERKVAQLAEENERLKQEIERLTREVEATRR 157


>gi|110349772 alpha 1 type I collagen preproprotein [Homo sapiens]
          Length = 1464

 Score = 48.5 bits (114), Expect = 6e-06
 Identities = 58/186 (31%), Positives = 70/186 (37%), Gaps = 33/186 (17%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMA 69
           GP RG P P  P    + G AGKPGR  E G  G  GA                 +   A
Sbjct: 218 GP-RGPPGP--PGKNGDDGEAGKPGRPGERGPPGPQGARG---------------LPGTA 259

Query: 70  AVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGD 129
            +P ++      F+ L  +   AG AGP +  PG P     PG   PR L      G+  
Sbjct: 260 GLPGMK--GHRGFSGLDGAKGDAGPAGP-KGEPGSPGENGAPGQMGPRGLP-----GERG 311

Query: 130 APGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKS-AGKRGPD 188
            PG+  PA     A+       A  P  PT P  P   P    A G A  +   G  GP 
Sbjct: 312 RPGAPGPAG----ARGNDGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQ 367

Query: 189 --RGSP 192
             RG P
Sbjct: 368 GVRGEP 373



 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 59/201 (29%), Positives = 68/201 (33%), Gaps = 28/201 (13%)

Query: 9   DGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSM 68
           DG    A  P    P   PG  G  G   E G  G  G+  P     E      A     
Sbjct: 325 DGATGAAGPPGPTGPAGPPGFPGAVGAKGEAGPQGPRGSEGPQGVRGEPGPPGPAGAAGP 384

Query: 69  AAVPTLELCHDELFADLFNSNHKAGGAGPLELLPG-----GPARPLGP-GPAAPRLLKRE 122
           A  P          AD       A GA  +   PG     GP+ P GP GP  P+    E
Sbjct: 385 AGNPG---------ADGQPGAKGANGAPGIAGAPGFPGARGPSGPQGPGGPPGPKGNSGE 435

Query: 123 P-------DWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPP--RSSPRQTPA 173
           P       D G    PG +        A       A G+P P   P PP  R  P     
Sbjct: 436 PGAPGSKGDTGAKGEPGPVGVQGPPGPAGEEGKRGARGEPGPTGLPGPPGERGGPGSRGF 495

Query: 174 PGPAREKSAGKRGP--DRGSP 192
           PG   +  AG +GP  +RGSP
Sbjct: 496 PG--ADGVAGPKGPAGERGSP 514



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 55/193 (28%), Positives = 67/193 (34%), Gaps = 20/193 (10%)

Query: 10  GPA--RGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDS 67
           GPA  RG+P PA P     PG AG+PG    PGA G  G+      D ++     A  D 
Sbjct: 506 GPAGERGSPGPAGPKG--SPGEAGRPGEAGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDG 563

Query: 68  MAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGD 127
               P       +     F     A G        G P  P   GPA      ++ + G 
Sbjct: 564 RPGPPGPPGARGQAGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAG-----KDGEAGA 618

Query: 128 GDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSP-----EPPRSSPRQTPAPGPAREKSA 182
              PG   PA          S    G P P   P        +  P    APGP     +
Sbjct: 619 QGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGPPGEAGKPGEQGVPGDLGAPGP-----S 673

Query: 183 GKRGPDRGSPEYR 195
           G RG +RG P  R
Sbjct: 674 GARG-ERGFPGER 685



 Score = 40.0 bits (92), Expect = 0.002
 Identities = 57/187 (30%), Positives = 65/187 (34%), Gaps = 41/187 (21%)

Query: 12  ARGAPWP-AEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAA 70
           ARGAP    EP P    G AG PG   +PGA GEPG             D  A  D+   
Sbjct: 795 ARGAPGDRGEPGPPGPAGFAGPPGADGQPGAKGEPG-------------DAGAKGDAGPP 841

Query: 71  VPTLELCHDELFADLFNSNHKA--GGAGP--LELLPGGPARPLGPGPAAPRLLKREPDWG 126
            P           ++     K   G AGP      PG   R   PGP+           G
Sbjct: 842 GPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAAGRVGPPGPS-----------G 890

Query: 127 DGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREK-SAGKR 185
           +   PG   PA              AG+P     P P          PGPA EK S G  
Sbjct: 891 NAGPPGPPGPAGKEGGKGPRGETGPAGRPGEVGPPGP----------PGPAGEKGSPGAD 940

Query: 186 GPDRGSP 192
           GP  G+P
Sbjct: 941 GP-AGAP 946



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 53/194 (27%), Positives = 64/194 (32%), Gaps = 34/194 (17%)

Query: 17   WPAEPAPFYEPGRAGKPGRGAE---PGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVPT 73
            +P  P P  EPG+ G  G   E   PG +G PG A P           +         P 
Sbjct: 972  FPGLPGPSGEPGKQGPSGASGERGPPGPMGPPGLAGPPGESGREGAPGAEGSPGRDGSPG 1031

Query: 74   LELCHDELF-ADLFNSNHKAGGAGPL----------ELLPGGPARPLGP-------GPAA 115
             +    E   A    +    G  GP+          E  P GPA P+GP       GP  
Sbjct: 1032 AKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQG 1091

Query: 116  PRLLKREP-DWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAP 174
            PR  K E  + GD    G    + +             G P PP SP     S    PA 
Sbjct: 1092 PRGDKGETGEQGDRGIKGHRGFSGLQ------------GPPGPPGSPGEQGPSGASGPAG 1139

Query: 175  GPAREKSAGKRGPD 188
                  SAG  G D
Sbjct: 1140 PRGPPGSAGAPGKD 1153



 Score = 37.4 bits (85), Expect = 0.014
 Identities = 52/185 (28%), Positives = 59/185 (31%), Gaps = 48/185 (25%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMA 69
           GP RG   PA P     PGR G PG+   PG  G PG   P       A           
Sbjct: 118 GP-RGPRGPAGP-----PGRDGIPGQPGLPGPPGPPGPPGPPGLGGNFA----------- 160

Query: 70  AVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGD 129
             P L   +DE      +     G +GP   LPG P  P   G   P         G+  
Sbjct: 161 --PQLSYGYDEKSTGGISVPGPMGPSGP-RGLPGPPGAPGPQGFQGPP--------GEPG 209

Query: 130 APGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPD- 188
            PG                  A+G   P   P PP  +     A  P R    G  GP  
Sbjct: 210 EPG------------------ASGPMGPRGPPGPPGKNGDDGEAGKPGRPGERGPPGPQG 251

Query: 189 -RGSP 192
            RG P
Sbjct: 252 ARGLP 256



 Score = 35.8 bits (81), Expect = 0.040
 Identities = 54/185 (29%), Positives = 63/185 (34%), Gaps = 20/185 (10%)

Query: 10   GPA--RGAPWP-AEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYID 66
            GPA   G   P  E  P   PG  G PG     G  G PGA  PA           A   
Sbjct: 899  GPAGKEGGKGPRGETGPAGRPGEVGPPGPPGPAGEKGSPGADGPAGAPGTPGPQGIAGQR 958

Query: 67   SMAAVPTLELCHDELFADLFNSNHKAGGAGPLELL-PGGPARPLGPGPAAPRLLKREPDW 125
             +  +P      +  F  L   + + G  GP       GP  P+GP    P L     + 
Sbjct: 959  GVVGLPGQR--GERGFPGLPGPSGEPGKQGPSGASGERGPPGPMGP----PGLAGPPGES 1012

Query: 126  GDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKR 185
            G   APG       A  +        A      T P  P  +P    APGP     AGK 
Sbjct: 1013 GREGAPG-------AEGSPGRDGSPGAKGDRGETGPAGPPGAPGAPGAPGPV--GPAGKS 1063

Query: 186  GPDRG 190
            G DRG
Sbjct: 1064 G-DRG 1067



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 54/206 (26%), Positives = 65/206 (31%), Gaps = 41/206 (19%)

Query: 9    DGPARGAPWPAEPAPFYEPGRAGKPGRGAE------PGALGEPGAAAPAMYDDESAIDFS 62
            DGPA     P       + G  G PG+  E      PG  GEPG   P+    E      
Sbjct: 940  DGPAGAPGTPGPQGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGASGERGPPGP 999

Query: 63   AYIDSMAAVPTLELCHDELFAD----------LFNSNHKAGGAGPLELLPGGPARPLGPG 112
                 +A  P          A+                + G AGP    PG P  P  PG
Sbjct: 1000 MGPPGLAGPPGESGREGAPGAEGSPGRDGSPGAKGDRGETGPAGP----PGAPGAPGAPG 1055

Query: 113  PAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTP 172
            P  P         G     G   PA  A     V  + A G    P  P+ PR    +T 
Sbjct: 1056 PVGPA--------GKSGDRGETGPAGPAG---PVGPVGARG----PAGPQGPRGDKGETG 1100

Query: 173  APGPAREKS----AGKRGP--DRGSP 192
              G    K     +G +GP    GSP
Sbjct: 1101 EQGDRGIKGHRGFSGLQGPPGPPGSP 1126



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 56/200 (28%), Positives = 69/200 (34%), Gaps = 29/200 (14%)

Query: 9   DGPARGAPWPAEPAPFYEPGRAGKPG-RGAE--PGALGEPGAAAPAMYDDESAIDFSAYI 65
           DG    A  P  P     PG  G PG RGA   PG  G+ G A P   D     D    +
Sbjct: 706 DGAKGDAGAPGAPGSQGAPGLQGMPGERGAAGLPGPKGDRGDAGPKGADGSPGKDGVRGL 765

Query: 66  DSMAAVPTLELCHDELFADLFNSNHKAGGAGPLEL--LPGGPARPLGPGP---AAPRLLK 120
                 P       +        +  +G AGP      PG    P  PGP   A P    
Sbjct: 766 TGPIGPPGPAGAPGDK-----GESGPSGPAGPTGARGAPGDRGEPGPPGPAGFAGPPGAD 820

Query: 121 REP----DWGDGDAPGSLLPAQVAACAQTVVSLAAAGQP---------TPPTSPEPPRSS 167
            +P    + GD  A G   P   A  A     +   G P          PP +   P ++
Sbjct: 821 GQPGAKGEPGDAGAKGDAGPPGPAGPAGPPGPIGNVGAPGAKGARGSAGPPGATGFPGAA 880

Query: 168 PRQTPAPGPAREKSAGKRGP 187
            R  P PGP+   +AG  GP
Sbjct: 881 GRVGP-PGPS--GNAGPPGP 897



 Score = 31.2 bits (69), Expect = 0.99
 Identities = 47/175 (26%), Positives = 56/175 (32%), Gaps = 20/175 (11%)

Query: 12   ARGAPWPAEPAPFY----EPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDS 67
            A GAP P  PA       E G AG  G     GA G  G   P     E+       I  
Sbjct: 1050 APGAPGPVGPAGKSGDRGETGPAGPAGPVGPVGARGPAGPQGPRGDKGETGEQGDRGIKG 1109

Query: 68   MAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGP-GPAAPRLLKREPDWG 126
                          F+ L       G  G  E  P G + P GP GP  P         G
Sbjct: 1110 HRG-----------FSGLQGPPGPPGSPG--EQGPSGASGPAGPRGP--PGSAGAPGKDG 1154

Query: 127  DGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKS 181
                PG + P            +   G P PP  P PP +    +  P P +EK+
Sbjct: 1155 LNGLPGPIGPPGPRGRTGDAGPVGPPGPPGPPGPPGPPSAGFDFSFLPQPPQEKA 1209



 Score = 29.3 bits (64), Expect = 3.8
 Identities = 53/206 (25%), Positives = 67/206 (32%), Gaps = 41/206 (19%)

Query: 3   AALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFS 62
           A +    GP   A  P +      PG  G  G   + G  G  G   PA    E      
Sbjct: 577 AGVMGFPGPKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGP 636

Query: 63  AYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARP--------LG-PGP 113
           A       +P                    G AGP    PG   +P        LG PGP
Sbjct: 637 AGSPGFQGLP--------------------GPAGP----PGEAGKPGEQGVPGDLGAPGP 672

Query: 114 AAPRLLKREP-DWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPP--RSSPRQ 170
           +  R  +  P + G    PG   P           +   AG P  P S   P  +  P +
Sbjct: 673 SGARGERGFPGERGVQGPPGPAGPRGANGAPGNDGAKGDAGAPGAPGSQGAPGLQGMPGE 732

Query: 171 TPA---PGPAREK-SAGKRGPDRGSP 192
             A   PGP  ++  AG +G D GSP
Sbjct: 733 RGAAGLPGPKGDRGDAGPKGAD-GSP 757


>gi|14110395 X-box binding protein 1 isoform XBP1(U) [Homo sapiens]
          Length = 261

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 123 PDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSA 182
           P+  DG     LL  Q A+ A      A AGQ  P   P    +SP       P   K  
Sbjct: 8   PNPADGTPKVLLLSGQPASAAG-----APAGQALPLMVPAQRGASPEAASGGLPQARK-- 60

Query: 183 GKRGPDRGSPEYR--QRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKL---HQRV 237
            ++     SPE +  +R+ +N +A + +RD+ K R  E++Q++V+L  EN+KL   +Q +
Sbjct: 61  -RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLL 119

Query: 238 EQLTRDLAGLRQFFKQ 253
            + T  L    Q  +Q
Sbjct: 120 REKTHGLVVENQELRQ 135


>gi|118640873 X-box binding protein 1 isoform XBP1(S) [Homo sapiens]
          Length = 376

 Score = 47.8 bits (112), Expect = 1e-05
 Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 13/136 (9%)

Query: 123 PDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSA 182
           P+  DG     LL  Q A+ A      A AGQ  P   P    +SP       P   K  
Sbjct: 8   PNPADGTPKVLLLSGQPASAAG-----APAGQALPLMVPAQRGASPEAASGGLPQARK-- 60

Query: 183 GKRGPDRGSPEYR--QRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKL---HQRV 237
            ++     SPE +  +R+ +N +A + +RD+ K R  E++Q++V+L  EN+KL   +Q +
Sbjct: 61  -RQRLTHLSPEEKALRRKLKNRVAAQTARDRKKARMSELEQQVVDLEEENQKLLLENQLL 119

Query: 238 EQLTRDLAGLRQFFKQ 253
            + T  L    Q  +Q
Sbjct: 120 REKTHGLVVENQELRQ 135


>gi|110832843 TBP-associated factor 4 [Homo sapiens]
          Length = 1085

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 37/100 (37%), Positives = 39/100 (39%), Gaps = 11/100 (11%)

Query: 91  KAGGAGPLELLPGGPARPLGP-GPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSL 149
           + GG GP    P  P RPL P GPA P    R P  G   + GS  P   AA        
Sbjct: 96  RPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEG---SAGSCAPVPAAAAVAAGPEP 152

Query: 150 AAAGQPTPPTSPEP------PRSSPRQTPAPGPAREKSAG 183
           A AG P  P  P        P   P   P PGP   K AG
Sbjct: 153 APAG-PAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAG 191



 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 55/188 (29%), Positives = 68/188 (36%), Gaps = 46/188 (24%)

Query: 10  GPARGAPWPAEPA-PFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSM 68
           GP      PA+PA P     RAG PG G  PG    PG   PA       ++ SA     
Sbjct: 149 GPEPAPAGPAKPAGPAALAARAG-PGPGPGPGPGPGPGPGKPAGPGAAQTLNGSAA---- 203

Query: 69  AAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLG-PGPAAPRLLKREPDWGD 127
                           L NS+H A  A  + L+  GPA  L  P PAAP  + + P +  
Sbjct: 204 ----------------LLNSHHAAAPA--VSLVNNGPAALLPLPKPAAPGTVIQTPPFVG 245

Query: 128 GDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSS---PRQTPAPGPAREKSAGK 184
             AP    PA  A              P+PP +P P   +   P   PAP          
Sbjct: 246 AAAP----PAPAA--------------PSPPAAPAPAAPAAAPPPPPPAPATLARPPGHP 287

Query: 185 RGPDRGSP 192
            GP   +P
Sbjct: 288 AGPPTAAP 295



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 42/176 (23%), Positives = 57/176 (32%), Gaps = 52/176 (29%)

Query: 61  FSAYIDSMAAVPTLELCHDELFADLFNSNH--------KAGGAGPL--ELLPGGPARPLG 110
           F++ +D       +     +L A   + +H        +A  AG L   ++ G PA   G
Sbjct: 13  FNSEVDEKVVSDLVGSLESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAG 72

Query: 111 PGPAAPR------------LLKREPDWGDGDAPG------SLLPA--------------- 137
            GPAAP               +  P  G    PG       L+PA               
Sbjct: 73  AGPAAPAEGAPGAAPEPPPAGRARPGGGGPQRPGPPSPRRPLVPAGPAPPAAKLRPPPEG 132

Query: 138 QVAACAQTVVSLAAAGQPTP-PTSPEPP--------RSSPRQTPAPGPAREKSAGK 184
              +CA    + A A  P P P  P  P        R+ P   P PGP      GK
Sbjct: 133 SAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGK 188



 Score = 28.1 bits (61), Expect = 8.4
 Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 9/51 (17%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGK-----PGRGAEPGALGEPG----AAAPA 51
           GP   AP    PA     G AG      P  G   G  G+PG    AAAPA
Sbjct: 289 GPPTAAPAVPPPAAAQNGGSAGAAPAPAPAAGGPAGVSGQPGPGAAAAAPA 339


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 47.0 bits (110), Expect = 2e-05
 Identities = 50/163 (30%), Positives = 74/163 (45%), Gaps = 30/163 (18%)

Query: 91   KAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLA 150
            +A GAG L+L  GG A P+G G A             G  PGS + A+      T     
Sbjct: 1129 RAPGAGRLDLGSGGRA-PVGTGTAP------------GGGPGSGVDAKAGWVDNT----- 1170

Query: 151  AAGQPTPPTSPEPPRSSPRQ-TPAPGPAREKSAGKRGPDRGSPEYRQRRERNNIAVRKSR 209
               QP PP  P PP + PR+  PAP  AR + A +  P  G+P+    R   + A+    
Sbjct: 1171 -RPQPPPPPLPPPPEAQPRRLEPAPPRARPEVAPEGEP--GAPD---SRAGGDTALSGDG 1224

Query: 210  D--KAKRRNQEMQQKLVEL---SAENEKLHQRVEQLTRDLAGL 247
            D  K +R+  EM +  ++L      +E++  R+ +L+  L  L
Sbjct: 1225 DPPKPERKGPEMPRLFLDLGPPQGNSEQIKARLSRLSLALPPL 1267



 Score = 32.0 bits (71), Expect = 0.58
 Identities = 35/125 (28%), Positives = 43/125 (34%), Gaps = 26/125 (20%)

Query: 11  PARGAPWPAEPAPFYEPGRAGKPGRGAEP-GALGEPGA--AAPAMYDDESAIDFSAYIDS 67
           P RG P PA P P   P     P    +P  A+  PG+  ++P     +S  +       
Sbjct: 774 PGRGPP-PAPPPPPPPPRAPADPAASPDPPSAVASPGSGLSSPGPKPGDSGYETETPFSP 832

Query: 68  MAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGD 127
             A P                    GGA   E +P   A P  P P APR     PD G 
Sbjct: 833 EGAFP-------------------GGGAAEEEGVPRPRAPPEPPDPGAPR---PPPDPGP 870

Query: 128 GDAPG 132
              PG
Sbjct: 871 LPLPG 875


>gi|116256356 alpha 4 type IV collagen precursor [Homo sapiens]
          Length = 1690

 Score = 46.6 bits (109), Expect = 2e-05
 Identities = 55/191 (28%), Positives = 68/191 (35%), Gaps = 41/191 (21%)

Query: 11   PARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAA 70
            P R  P P    P   PG  G PG   +PG +G+PG   P     +  I     I   + 
Sbjct: 1117 PGRPGP-PGSSGPPGCPGDHGMPGLRGQPGEMGDPG---PRGLQGDPGIPGPPGIKGPSG 1172

Query: 71   VPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLG-PGPAAPRLLKREPDWGDGD 129
             P L   H            + G  G   L   GP  P+G PG    R        GD  
Sbjct: 1173 SPGLNGLH--------GLKGQKGTKGASGLHDVGPPGPVGIPGLKGER--------GDPG 1216

Query: 130  APGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPP------RSSPRQTPAPGPAREKSAG 183
            +PG   P                G P PP S  PP        +P+  P PGP  ++  G
Sbjct: 1217 SPGISPPG----------PRGKKGPPGPPGSSGPPGPAGATGRAPKDIPDPGPPGDQ--G 1264

Query: 184  KRGPD--RGSP 192
              GPD  RG+P
Sbjct: 1265 PPGPDGPRGAP 1275



 Score = 34.7 bits (78), Expect = 0.090
 Identities = 33/110 (30%), Positives = 40/110 (36%), Gaps = 26/110 (23%)

Query: 11  PARGAPW-PAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMA 69
           P +G P  P  P  + E G  G PG    PG LG PG A   M        F      + 
Sbjct: 364 PLKGPPGDPGFPGRYGETGDVGPPG---PPGLLGRPGEACAGMIGPPGPQGF----PGLP 416

Query: 70  AVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPG-PAAPRL 118
            +P                  +AG  G  +  PG P +P  PG P AP L
Sbjct: 417 GLP-----------------GEAGIPGRPDSAPGKPGKPGSPGLPGAPGL 449



 Score = 34.7 bits (78), Expect = 0.090
 Identities = 54/199 (27%), Positives = 66/199 (33%), Gaps = 60/199 (30%)

Query: 14  GAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVPT 73
           G P   + AP  +PG+ G PG    PG  G PG               S+ I      P 
Sbjct: 423 GIPGRPDSAPG-KPGKPGSPGLPGAPGLQGLPG---------------SSVIYCSVGNPG 466

Query: 74  LELCHDELFADLFNSNHKAGGAGPL-----ELLPGGPARPLGPGPAAPRLLKREPDWGDG 128
            +         +       GG GP      E L      P+GP P  P L  R+   GD 
Sbjct: 467 PQ--------GIKGKVGPPGGRGPKGEKGNEGLCACEPGPMGP-PGPPGLPGRQGSKGDL 517

Query: 129 DAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSA------ 182
             PG                L   G P PP +  PP   P +  A GP   K A      
Sbjct: 518 GLPG---------------WLGTKGDPGPPGAEGPP-GLPGKHGASGPPGNKGAKGDMVV 561

Query: 183 -------GKRGPDRGSPEY 194
                  G+RGPD G P +
Sbjct: 562 SRVKGHKGERGPD-GPPGF 579



 Score = 34.7 bits (78), Expect = 0.090
 Identities = 60/207 (28%), Positives = 76/207 (36%), Gaps = 56/207 (27%)

Query: 13   RGAPW-PAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAV 71
            RGAP  P +P     PG  G PG   +PG +G PG A                   M  +
Sbjct: 830  RGAPGIPGQPGLPGYPGSPGAPGGKGQPGDVGPPGPA------------------GMKGL 871

Query: 72   PTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLG-------PGPAAPRLLKREPD 124
            P L                + G  GP   LPG P  P G       PGP  PR L   P 
Sbjct: 872  PGLP--------------GRPGAHGP-PGLPGIPG-PFGDDGLPGPPGPKGPRGLPGFPG 915

Query: 125  W-GDGDAPGSL-LPAQVAACAQTVVS--------LAAAGQPTPP-TSPEPPRSSPRQTPA 173
            + G+   PG+   P       +  +S          A G   PP    E    S + TP 
Sbjct: 916  FPGERGKPGAEGCPGAKGEPGEKGMSGLPGDRGLRGAKGAIGPPGDEGEMAIISQKGTPG 975

Query: 174  -PGPAREKS-AGKRGPDRGSPEYRQRR 198
             PGP  +    G+RG D+G+P  + RR
Sbjct: 976  EPGPPGDDGFPGERG-DKGTPGMQGRR 1001



 Score = 34.3 bits (77), Expect = 0.12
 Identities = 26/95 (27%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 14  GAPWPAEPAPFY-EPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVP 72
           GA  PA P  +  EPG  G PG+   PG  G PG        D   +           V 
Sbjct: 202 GAGGPAGPTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMGDPGEVGQQGSPGPTLLVE 261

Query: 73  TLELCHDELFADLFNSNHKAGGAGPLELLPGGPAR 107
             + C       L+       G   +  LPG P R
Sbjct: 262 PPDFC-------LYKGEKGIKGIPGMVGLPGPPGR 289



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGA-----LGEPG 46
           GPA    +P EP     PG+ G+PG    PG      +G+PG
Sbjct: 205 GPAGPTGYPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMGDPG 246



 Score = 29.3 bits (64), Expect = 3.8
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 3/29 (10%)

Query: 18  PAEPAPFYEPGRAGKPGRGAEPGALGEPG 46
           P  P P   PG  GKPG     G+ G+PG
Sbjct: 124 PGHPGP---PGPRGKPGMSGHNGSRGDPG 149



 Score = 28.9 bits (63), Expect = 4.9
 Identities = 51/196 (26%), Positives = 66/196 (33%), Gaps = 35/196 (17%)

Query: 18  PAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAP----AMYDDESAIDFSAYIDSMAAVPT 73
           P  P P  +PG +G  G   +PG  G  GA  P        ++     S +I  + AV  
Sbjct: 127 PGPPGPRGKPGMSGHNGSRGDPGFPGGRGALGPGGPLGHPGEKGEKGNSVFI--LGAVKG 184

Query: 74  LELCH-DELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPG 132
           ++    D     L  S    G AGP    PG P     PG      LK  P  G     G
Sbjct: 185 IQGDRGDPGLPGLPGSWGAGGPAGPTG-YPGEPGLVGPPGQPGRPGLKGNPGVGVKGQMG 243

Query: 133 SLLPAQVAACAQTVVSLAAAGQPTPPTSPEPP-----------RSSPRQTPAPGP---AR 178
              P +V             G P P    EPP           +  P     PGP     
Sbjct: 244 D--PGEV----------GQQGSPGPTLLVEPPDFCLYKGEKGIKGIPGMVGLPGPPGRKG 291

Query: 179 EKSAGKRGPDRGSPEY 194
           E   G +G ++G P +
Sbjct: 292 ESGIGAKG-EKGIPGF 306



 Score = 28.9 bits (63), Expect = 4.9
 Identities = 20/49 (40%), Positives = 20/49 (40%), Gaps = 12/49 (24%)

Query: 9    DGPARGAPWP-----------AEPAPFYEPGRAGKPGRGAEPGALGEPG 46
            DGP RGAP P            EP     PG  G PG    PG  G PG
Sbjct: 1269 DGP-RGAPGPPGLPGSVDLLRGEPGDCGLPGPPGPPGPPGPPGYKGFPG 1316



 Score = 28.9 bits (63), Expect = 4.9
 Identities = 18/46 (39%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 10   GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDD 55
            GP     +P  P     PG  G+ G    PG  GEPG   PA  DD
Sbjct: 1331 GPQGPHGFPGPPGEKGLPGPPGRKGPTGLPGPRGEPG--PPADVDD 1374



 Score = 28.9 bits (63), Expect = 4.9
 Identities = 20/48 (41%), Positives = 23/48 (47%), Gaps = 7/48 (14%)

Query: 8    LDGPARGAPWPAEPAPFYE----PGRAGKPGRGAEPGALGEPGAAAPA 51
            L GP RG P P  PA   +    PG  G PG     GA+G PG   P+
Sbjct: 1359 LPGP-RGEPGP--PADVDDCPRIPGLPGAPGMRGPEGAMGLPGMRGPS 1403


>gi|149158690 HLA-B associated transcript-2 [Homo sapiens]
          Length = 2157

 Score = 46.2 bits (108), Expect = 3e-05
 Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 25/157 (15%)

Query: 122 EPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAP--GPARE 179
           E D   G++P S  P    A A+T  S     +P PP +P+PP   P + PA   GP  +
Sbjct: 372 EADGKKGNSPNSEPPTPKTAWAET--SRPPETEPGPP-APKPPLPPPHRGPAGNWGPPGD 428

Query: 180 KSAGKRGPDRGSPE------------YRQRRERNNIAVRKSRDKAKRRNQEMQQKLVE-- 225
                  PDRG P             +RQRR++++  +  + ++A+RR +E ++++ E  
Sbjct: 429 Y------PDRGGPPCKPPAPEDEDEAWRQRRKQSSSEISLAVERARRRREEEERRMQEER 482

Query: 226 LSAENEKLHQRVEQLTRDLAGLRQFFKQLPSPPFLPA 262
            +A  EKL +  E+       L+      P+ P  PA
Sbjct: 483 RAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPSTPA 519



 Score = 40.4 bits (93), Expect = 0.002
 Identities = 48/177 (27%), Positives = 60/177 (33%), Gaps = 20/177 (11%)

Query: 11  PARGAPWPAEPAPFYEPGRAGKPGRGAEPGAL---GEPGAAAPAMYDDESAIDFSAYIDS 67
           P    P P  P P   P   G  G    PG     G P    PA  D++ A        S
Sbjct: 398 PPETEPGPPAPKPPLPPPHRGPAGNWGPPGDYPDRGGPPCKPPAPEDEDEAWRQRRKQSS 457

Query: 68  MAAVPTLELCHDELFAD--LFNSNHKAGGAGPLELLP---GGPARPLGPGPAAPRLLKRE 122
                 +E        +        +A  A  L+ L    G P + L   PAAP      
Sbjct: 458 SEISLAVERARRRREEEERRMQEERRAACAEKLKRLDEKFGAPDKRLKAEPAAPPAAPST 517

Query: 123 PDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSP--RQTPAPGPA 177
           P      AP   +P ++ A          A  PTP T PE P  +P  + TP PG A
Sbjct: 518 P------APPPAVPKELPAPPAP----PPASAPTPETEPEEPAQAPPAQSTPTPGVA 564



 Score = 33.9 bits (76), Expect = 0.15
 Identities = 32/107 (29%), Positives = 39/107 (36%), Gaps = 19/107 (17%)

Query: 101 LPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVS------------ 148
           LP  PA P    PA+    + EP+      P    P    A A T+VS            
Sbjct: 528 LPAPPAPP----PASAPTPETEPEEPAQAPPAQSTPTPGVAAAPTLVSGGGSTSSTSSGS 583

Query: 149 -LAAAGQPTPPTS--PEPPRSSPRQTPAPGPAREKSAGKRGPDRGSP 192
             A+  +P  P+   PEPP   P  T  P P  E      GP R  P
Sbjct: 584 FEASPVEPQLPSKEGPEPPEEVPPPTTPPVPKVEPKGDGIGPTRQPP 630



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 37/144 (25%), Positives = 50/144 (34%), Gaps = 19/144 (13%)

Query: 91   KAGGAGPLELLPGGPARPLGPGPA----------APRLLKREPDWGDGDAPGSLLPAQVA 140
            K G    + L P  P  P  P PA           PR +      G G  P  + P    
Sbjct: 1128 KEGTLTQVPLAPPPPGAPPSPAPARFTARGGRVFTPRGVPSRRGRGGGRPPPQVCPGW-- 1185

Query: 141  ACAQTVVSLAAAGQPTPPTSPEPPRSSP-RQTPAPGPAREKS-AGKRGPDRGSPEYRQRR 198
              +    SLA      PPT P PP   P ++   PGP    +  G  G      E  +R 
Sbjct: 1186 --SPPAKSLAPK---KPPTGPLPPSKEPLKEKLIPGPLSPVARGGSNGGSNVGMEDGERP 1240

Query: 199  ERNNIAVRKSRDKAKRRNQEMQQK 222
             R      + +DK  R  +  Q++
Sbjct: 1241 RRRRHGRAQQQDKPPRFRRLKQER 1264



 Score = 29.3 bits (64), Expect = 3.8
 Identities = 25/92 (27%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 111 PGPAAPRLLKREPDWGDGDAPG---SLLPAQVAA---CAQTVVSLAAAGQPTPPTSPEPP 164
           P P  P  L   P + +  APG   S  P +            S   A   TPP   EPP
Sbjct: 827 PVPPPPPYLASYPGFPENGAPGPPISRFPLEEPGPRPLPWPPGSDEVAKIQTPPPKKEPP 886

Query: 165 RSSPRQTPAPGPAREKSAGKRGPDRGSPEYRQ 196
           +    Q   P   R+ + G     +G P  R+
Sbjct: 887 KEETAQLTGPEAGRKPARGVGSGGQGPPPPRR 918


>gi|4502951 collagen type III alpha 1 preproprotein [Homo sapiens]
          Length = 1466

 Score = 45.8 bits (107), Expect = 4e-05
 Identities = 64/207 (30%), Positives = 70/207 (33%), Gaps = 58/207 (28%)

Query: 9   DGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSM 68
           DGP RG   P  P     PG AG+PG   E GA G PG A P     E            
Sbjct: 758 DGP-RGPTGPIGP-----PGPAGQPGDKGEGGAPGLPGIAGPRGSPGERGETGPPGPAGF 811

Query: 69  AAVPTLELCHDELFADLFNSNHKAGGAG----PLELLPGGPARPLGP-------GPAAPR 117
              P                N + GG G    P E   GGP    GP       GP  P+
Sbjct: 812 PGAP--------------GQNGEPGGKGERGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQ 857

Query: 118 LLKREPDWGDGDAPGSL-LPAQVAACAQTVVSLAAAGQPTPPTS-----PEPPRSSPRQT 171
            +K E   G    PG+   P              A G P PP S     P  P  SP + 
Sbjct: 858 GVKGER--GSPGGPGAAGFP-------------GARGLPGPPGSNGNPGPPGPSGSPGKD 902

Query: 172 PAPGPAREKSA----GKRGP--DRGSP 192
             PGPA    A    G  GP  D G P
Sbjct: 903 GPPGPAGNTGAPGSPGVSGPKGDAGQP 929



 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 61/195 (31%), Positives = 66/195 (33%), Gaps = 21/195 (10%)

Query: 12  ARGAPWPA----EPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDS 67
           ARG P PA     P      G  GK G   EPG  GE G A           D       
Sbjct: 412 ARGPPGPAGANGAPGLRGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSPG 471

Query: 68  MAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPG--GPARPLG-PGPAAPRLLKREPD 124
                 L     E  A  F      G AGP   +PG  GPA   G PGPA PR    EP 
Sbjct: 472 EPGANGLPGAAGERGAPGFR-----GPAGP-NGIPGEKGPAGERGAPGPAGPRGAAGEPG 525

Query: 125 W-------GDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPA 177
                   G    PGS              S   +G+P PP  P  PR  P     PGP 
Sbjct: 526 RDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRPGPP-GPSGPRGQPGVMGFPGPK 584

Query: 178 REKSAGKRGPDRGSP 192
               A  +  +RG P
Sbjct: 585 GNDGAPGKNGERGGP 599



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 59/217 (27%), Positives = 69/217 (31%), Gaps = 47/217 (21%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGE---------PGA---AAPAMYDDES 57
           GPA     P  P     PG  G PG    PG  G+         PGA   + PA  D ES
Sbjct: 174 GPAGPPGPPGPPGTSGHPGSPGSPGYQGPPGEPGQAGPSGPPGPPGAIGPSGPAGKDGES 233

Query: 58  ---------AIDFSAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARP 108
                     +     I   A +P           D  N      GA  L+   G P   
Sbjct: 234 GRPGRPGERGLPGPPGIKGPAGIPGFPGMKGHRGFDGRNGEKGETGAPGLKGENGLPGEN 293

Query: 109 LGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEP----- 163
             PGP  PR        G+   PG  LP    A      +  + GQP PP  P       
Sbjct: 294 GAPGPMGPRGAP-----GERGRPG--LPGAAGARGND-GARGSDGQPGPPGPPGTAGFPG 345

Query: 164 ---------PRSSPRQTPAPG----PAREKSAGKRGP 187
                    P  SP    APG    P  +  AG +GP
Sbjct: 346 SPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGP 382



 Score = 37.0 bits (84), Expect = 0.018
 Identities = 18/41 (43%), Positives = 19/41 (46%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAP 50
           GPA     P  P      G AG+PG    PGA G PGA  P
Sbjct: 906 GPAGNTGAPGSPGVSGPKGDAGQPGEKGSPGAQGPPGAPGP 946



 Score = 36.2 bits (82), Expect = 0.031
 Identities = 17/43 (39%), Positives = 19/43 (44%)

Query: 8   LDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAP 50
           L GP      P  P P   PG+ G PG     GA G PG + P
Sbjct: 880 LPGPPGSNGNPGPPGPSGSPGKDGPPGPAGNTGAPGSPGVSGP 922



 Score = 35.8 bits (81), Expect = 0.040
 Identities = 46/169 (27%), Positives = 59/169 (34%), Gaps = 32/169 (18%)

Query: 20  EPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVPTLELCHD 79
           +P P   PGR G PG   +PG+ G PG             ++S   DS            
Sbjct: 110 DPGPPGIPGRNGDPGIPGQPGSPGSPGPPGICESCPTGPQNYSPQYDSY----------- 158

Query: 80  ELFADLFNSNHKAGGA-GPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQ 138
                    + K+G A G L   P GPA P  PGP  P      P  G   +PG   P  
Sbjct: 159 ---------DVKSGVAVGGLAGYP-GPAGP--PGPPGPPGTSGHP--GSPGSPGYQGPPG 204

Query: 139 VAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGP 187
               A        +G P PP +  P   + +   +  P R    G  GP
Sbjct: 205 EPGQA------GPSGPPGPPGAIGPSGPAGKDGESGRPGRPGERGLPGP 247



 Score = 34.7 bits (78), Expect = 0.090
 Identities = 62/205 (30%), Positives = 69/205 (33%), Gaps = 44/205 (21%)

Query: 10  GPA--RGAPWPAEP-APFYEPGRAGKPG----RG--AEPGALGEPGAAAPAMYDDESAID 60
           GPA  RGAP PA P     EPGR G PG    RG    PG  G  G   P     ES   
Sbjct: 504 GPAGERGAPGPAGPRGAAGEPGRDGVPGGPGMRGMPGSPGGPGSDGKPGPPGSQGESGRP 563

Query: 61  FSAYIDSMAAVPTLELCHDELFAD----LFNSNHKAGGAGPL-------ELLPGGPARPL 109
                      P +         D            GG GP        E  P GP  P 
Sbjct: 564 GPPGPSGPRGQPGVMGFPGPKGNDGAPGKNGERGGPGGPGPQGPPGKNGETGPQGPPGPT 623

Query: 110 GPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPR 169
           GPG           D GD   PG           Q +  L   G P P  + +P    P+
Sbjct: 624 GPG----------GDKGDTGPPG----------PQGLQGLPGTGGP-PGENGKPGEPGPK 662

Query: 170 -QTPAPG-PAREKSAGKRGPDRGSP 192
               APG P  +  AG  G +RG P
Sbjct: 663 GDAGAPGAPGGKGDAGAPG-ERGPP 686



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 46/187 (24%), Positives = 58/187 (31%), Gaps = 25/187 (13%)

Query: 13  RGAPW-------PAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYI 65
           RGAP        P    P    G AG PG     G  G PG    A +     +      
Sbjct: 827 RGAPGEKGEGGPPGVAGPPGGSGPAGPPGPQGVKGERGSPGGPGAAGFPGARGLPGPPGS 886

Query: 66  DSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDW 125
           +     P               S  K G  GP     G    P  PG + P+    +P  
Sbjct: 887 NGNPGPPGPS-----------GSPGKDGPPGP----AGNTGAPGSPGVSGPKGDAGQP-- 929

Query: 126 GDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKR 185
           G+  +PG+  P              A G   PP  P  PR SP      G + +  A   
Sbjct: 930 GEKGSPGAQGPPGAPGPLGIAGITGARGLAGPPGMP-GPRGSPGPQGVKGESGKPGANGL 988

Query: 186 GPDRGSP 192
             +RG P
Sbjct: 989 SGERGPP 995



 Score = 32.7 bits (73), Expect = 0.34
 Identities = 49/185 (26%), Positives = 58/185 (31%), Gaps = 33/185 (17%)

Query: 26   EPGRAGKPGRGAEPGALGEPGAAAP-AMYDDESAIDFSAYIDSMAAVPTLELCHDELFAD 84
            EPGR G PG    PG  G PG            A     +      V           A 
Sbjct: 1009 EPGRDGNPGSDGLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGPVGP---------AG 1059

Query: 85   LFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDW-------------GDGDAP 131
                  ++G AGP    PG       PGP  PR  K E                G+  AP
Sbjct: 1060 KSGDRGESGPAGPAG-APGPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAP 1118

Query: 132  GSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPG----PAREKSAGKRGP 187
            GS  PA      Q  +       P  P  P  P      +  PG    P    + G+RG 
Sbjct: 1119 GSPGPAG----QQGAIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGS 1174

Query: 188  DRGSP 192
            + GSP
Sbjct: 1175 E-GSP 1178



 Score = 31.2 bits (69), Expect = 0.99
 Identities = 57/217 (26%), Positives = 72/217 (33%), Gaps = 47/217 (21%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSM- 68
           GP      P    P  E G+ G+PG   + GA G PG    A    E      A    + 
Sbjct: 636 GPQGLQGLPGTGGPPGENGKPGEPGPKGDAGAPGAPGGKGDAGAPGERGPPGLAGAPGLR 695

Query: 69  -----------------------AAVPTLELCHDELFADLFNSNHKA-----GGAG---- 96
                                  A  P L+    E    L +   K      GG G    
Sbjct: 696 GGAGPPGPEGGKGAAGPPGPPGAAGTPGLQGMPGER-GGLGSPGPKGDKGEPGGPGADGV 754

Query: 97  PLELLPGGPARPLG-PGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQP 155
           P +  P GP  P+G PGPA      +  D G+G APG  LP  +A    +       G P
Sbjct: 755 PGKDGPRGPTGPIGPPGPAG-----QPGDKGEGGAPG--LPG-IAGPRGSPGERGETGPP 806

Query: 156 TPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSP 192
            P   P     +P Q   PG   E+ A     + G P
Sbjct: 807 GPAGFP----GAPGQNGEPGGKGERGAPGEKGEGGPP 839



 Score = 30.8 bits (68), Expect = 1.3
 Identities = 51/178 (28%), Positives = 58/178 (32%), Gaps = 25/178 (14%)

Query: 12   ARG-APWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAA 70
            ARG A  P  P P   PG  G  G   +PGA G  G   P        +  +A       
Sbjct: 955  ARGLAGPPGMPGPRGSPGPQGVKGESGKPGANGLSGERGPPGPQGLPGLAGTAGEPGRDG 1014

Query: 71   VPTLELCHDELFADLFNSNHKAGGAGPL--ELLPGGPARPLGPGPAAPRLLKREPDWGDG 128
             P  +         L   +   GG G       PG P  P  PGP  P      P    G
Sbjct: 1015 NPGSD--------GLPGRDGSPGGKGDRGENGSPGAPGAPGHPGPPGP----VGPAGKSG 1062

Query: 129  DAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRG 186
            D  G   PA  A       S  A G       P+ PR    +T   G A  K  G RG
Sbjct: 1063 DR-GESGPAGPAGAPGPAGSRGAPG-------PQGPRGDKGETGERGAAGIK--GHRG 1110



 Score = 30.8 bits (68), Expect = 1.3
 Identities = 44/180 (24%), Positives = 53/180 (29%), Gaps = 28/180 (15%)

Query: 14   GAPW-PAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVP 72
            GAP  P  P P    G AGK G   E G  G  GA  PA                    P
Sbjct: 1041 GAPGAPGHPGPPGPVGPAGKSGDRGESGPAGPAGAPGPA---------------GSRGAP 1085

Query: 73   TLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPG 132
              +    +           A G       PG P  P  PGPA  +        G   +PG
Sbjct: 1086 GPQGPRGDKGE---TGERGAAGIKGHRGFPGNPGAPGSPGPAGQQ--------GAIGSPG 1134

Query: 133  SLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSP 192
               P      +        +G P P   P P  +   +     P      G  GP  G+P
Sbjct: 1135 PAGPRGPVGPSGPPGKDGTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPP-GAP 1193



 Score = 30.8 bits (68), Expect = 1.3
 Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 1/36 (2%)

Query: 12   ARGAPWPAEP-APFYEPGRAGKPGRGAEPGALGEPG 46
            A G+P PA P  P    G  GK G    PG +G PG
Sbjct: 1129 AIGSPGPAGPRGPVGPSGPPGKDGTSGHPGPIGPPG 1164



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 48/174 (27%), Positives = 53/174 (30%), Gaps = 62/174 (35%)

Query: 10   GPA--RGAPWPAEP----APFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSA 63
            GPA  RGAP P  P        E G AG  G    PG  G PG+  PA    + AI    
Sbjct: 1077 GPAGSRGAPGPQGPRGDKGETGERGAAGIKGHRGFPGNPGAPGSPGPA--GQQGAI---- 1130

Query: 64   YIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGP-GPAAPRLLKRE 122
                                         G  G     P GP  P+GP GP         
Sbjct: 1131 -----------------------------GSPG-----PAGPRGPVGPSGPPGKD----- 1151

Query: 123  PDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGP 176
               G    PG + P           S  + G P  P  P PP        APGP
Sbjct: 1152 ---GTSGHPGPIGPPGPRGNRGERGSEGSPGHPGQPGPPGPP-------GAPGP 1195



 Score = 29.6 bits (65), Expect = 2.9
 Identities = 51/190 (26%), Positives = 59/190 (31%), Gaps = 30/190 (15%)

Query: 9   DGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSM 68
           DG       P  P P    G  G PG   E G  G PG+        E      A     
Sbjct: 323 DGARGSDGQPGPPGPPGTAGFPGSPGAKGEVGPAGSPGSNGAPGQRGEPGPQGHAGAQGP 382

Query: 69  AAVPTLELCHDELFADLFNSNHKAGGAGPL--ELLPGGPARPLG----PGPA----APRL 118
              P +              N   GG G +    +PG P   +G    PGPA    AP L
Sbjct: 383 PGPPGI--------------NGSPGGKGEMGPAGIPGAPGL-MGARGPPGPAGANGAPGL 427

Query: 119 LKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAR 178
                + G   A G   P      A       A G+     SP      P     PG A 
Sbjct: 428 RGGAGEPGKNGAKGEPGPRGERGEAGIPGVPGAKGEDGKDGSP----GEPGANGLPGAAG 483

Query: 179 EKSA-GKRGP 187
           E+ A G RGP
Sbjct: 484 ERGAPGFRGP 493


>gi|55750053 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 54/197 (27%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 95  AGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQ 154
           AGP    PG P   +GPGP  P      P       P    PA     + T +    A +
Sbjct: 680 AGPGTFKPGSPT--VGPGPLPPA----GPSGLPSLPPPPAAPASGPPLSATQIKQEPAEE 733

Query: 155 PTPPTSPEPPRSSPRQTP----APGPAREKSAGKRGPDRG------SPEYRQRRERNNIA 204
              P SP PP  SP   P     P  A + +   +  DRG      S  Y    E + +A
Sbjct: 734 YETPESPVPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFVPLEGSKLA 793

Query: 205 ------VRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRD--LAGLRQFFKQLPS 256
                 V K R +A++R +E +++  E   E E+  ++  +L R   LA   +   + PS
Sbjct: 794 KKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVECPS 853

Query: 257 -------PPFLPAAGTA 266
                  PPF P +  A
Sbjct: 854 LGPVPHRPPFEPGSAVA 870


>gi|55750041 atrophin-1 [Homo sapiens]
          Length = 1190

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 54/197 (27%), Positives = 77/197 (39%), Gaps = 31/197 (15%)

Query: 95  AGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQ 154
           AGP    PG P   +GPGP  P      P       P    PA     + T +    A +
Sbjct: 680 AGPGTFKPGSPT--VGPGPLPPA----GPSGLPSLPPPPAAPASGPPLSATQIKQEPAEE 733

Query: 155 PTPPTSPEPPRSSPRQTP----APGPAREKSAGKRGPDRG------SPEYRQRRERNNIA 204
              P SP PP  SP   P     P  A + +   +  DRG      S  Y    E + +A
Sbjct: 734 YETPESPVPPARSPSPPPKVVDVPSHASQSARFNKHLDRGFNSCARSDLYFVPLEGSKLA 793

Query: 205 ------VRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRD--LAGLRQFFKQLPS 256
                 V K R +A++R +E +++  E   E E+  ++  +L R   LA   +   + PS
Sbjct: 794 KKRADLVEKVRREAEQRAREEKEREREREREKEREREKERELERSVKLAQEGRAPVECPS 853

Query: 257 -------PPFLPAAGTA 266
                  PPF P +  A
Sbjct: 854 LGPVPHRPPFEPGSAVA 870


>gi|96974985 coiled-coil and C2 domain containing 1A [Homo sapiens]
          Length = 951

 Score = 45.4 bits (106), Expect = 5e-05
 Identities = 43/186 (23%), Positives = 68/186 (36%), Gaps = 46/186 (24%)

Query: 102 PGGPARPLGPGPAAPRLLKREPDWG--------DGDAPGSLLPAQVAACAQTVVSLAAAG 153
           P  P  P  PGP A +L  R+ D+          GD   +    +VA     V+   + G
Sbjct: 245 PQMPPGPCSPGPLA-QLQSRQRDYKLAALHAKQQGDTTAAARHFRVAKSFDAVLEALSRG 303

Query: 154 QP------------------TPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSPEYR 195
           +P                  +PP+ P  P ++P  T  P P R                 
Sbjct: 304 EPVDLSCLPPPPDQLPPDPPSPPSQPPTPATAPSTTEVPPPPRTLLEA----------LE 353

Query: 196 QRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTRDLAGLRQFFKQLP 255
           QR ER  +A  +++ K  +R   M +++V+   +  + H+         AG      +LP
Sbjct: 354 QRMERYQVAAAQAKSKGDQRKARMHERIVKQYQDAIRAHK---------AGRAVDVAELP 404

Query: 256 SPPFLP 261
            PP  P
Sbjct: 405 VPPGFP 410


>gi|79750944 ubiquitin specific peptidase 42 [Homo sapiens]
          Length = 1316

 Score = 45.1 bits (105), Expect = 7e-05
 Identities = 43/126 (34%), Positives = 54/126 (42%), Gaps = 12/126 (9%)

Query: 97  PLELLPGGPARPLGPGPAAPRLLKREPDWG-DGDAPGSLLPAQVAA--CAQTVVSLAAAG 153
           P  L P  PAR   P    P L+    D   D   P   L A  AA      V+ +A AG
Sbjct: 852 PEGLSPAPPARSEEPCEQ-PLLVHPSGDHARDAQDPSQSLGAPEAAERPPAPVLDMAPAG 910

Query: 154 QPTPPTSPEPPR----SSPRQTPAPGPAREKSAGKRGPDRGSPEYRQRRERNNIA--VRK 207
            P     P P      ++  + P P PA+EK    R  DRG   YR RRER++     R+
Sbjct: 911 HPEGDAEPSPGERVEDAAAPKAPGPSPAKEKIGSLRKVDRG--HYRSRRERSSSGEPARE 968

Query: 208 SRDKAK 213
           SR K +
Sbjct: 969 SRSKTE 974


>gi|169173182 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 255

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 58/199 (29%), Positives = 76/199 (38%), Gaps = 29/199 (14%)

Query: 4   ALFSLDGP-ARGAPWPAEPAPFYEPGRAGKPGR---GAEPGALGEPG-AAAPAMYDDESA 58
           AL  ++G   R  P P  P P   P RA +P        PG L  PG A +PA       
Sbjct: 25  ALSKVEGSECRALPTPTAPGP--SPRRAPEPPLLTLRPRPGTLRAPGNAESPAPRRARPD 82

Query: 59  IDFSAYIDSMAAVPTLELCHDELFADLFNSNHKAGG---AGPLELLPGGPARPLGPG--- 112
           +    +    AA P     H +++      +H  GG     P   LP  PA+   P    
Sbjct: 83  LG-RPWATRSAASP-----HSKMWL----GSHLRGGEMSGDPHTDLPAHPAQTTNPELEL 132

Query: 113 PAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTP 172
           PA P     +PD      P    PA  +   +     A  G  TPP      +S PR++P
Sbjct: 133 PADPA----QPDPAPLSRPAPPRPAHQSPAEEGPRGAAGGGPRTPPAGRTQGQSGPRESP 188

Query: 173 --APGPAREKSAGKRGPDR 189
             +PG A    A  RGP R
Sbjct: 189 RASPGSAAPAMASVRGPAR 207



 Score = 30.4 bits (67), Expect = 1.7
 Identities = 25/90 (27%), Positives = 35/90 (38%), Gaps = 15/90 (16%)

Query: 107 RPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPP-- 164
           +P+ PG   P L           A  +L   + + C    +    A  P+P  +PEPP  
Sbjct: 8   KPVSPGRPCPPLFS---------AWEALSKVEGSECR--ALPTPTAPGPSPRRAPEPPLL 56

Query: 165 --RSSPRQTPAPGPAREKSAGKRGPDRGSP 192
             R  P    APG A   +  +  PD G P
Sbjct: 57  TLRPRPGTLRAPGNAESPAPRRARPDLGRP 86



 Score = 28.9 bits (63), Expect = 4.9
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 131 PGSLLPAQVAACAQTVVSLAA---AGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGP 187
           P + LPA  A      + L A      P P + P PPR + +     GP      G R P
Sbjct: 114 PHTDLPAHPAQTTNPELELPADPAQPDPAPLSRPAPPRPAHQSPAEEGPRGAAGGGPRTP 173

Query: 188 DRG 190
             G
Sbjct: 174 PAG 176


>gi|194239643 activating transcription factor 7 isoform 3 [Homo
           sapiens]
          Length = 462

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 160 SPEPPRSSPRQ-TPAPGPAREKSAGKRGPDRGSPEYRQR-RERNNIAVRKSRDKAKRRNQ 217
           SP  P+ SP Q TP+ G  R     +R  D    E RQR  ERN  A  + R K K    
Sbjct: 283 SPAQPQVSPAQPTPSTGGRR-----RRTVDEDPDERRQRFLERNRAAASRCRQKRKLWVS 337

Query: 218 EMQQKLVELSAENEKLHQRVEQLTRDLAGLRQ 249
            +++K  EL+++N +L   V  L  ++A L+Q
Sbjct: 338 SLEKKAEELTSQNIQLSNEVTLLRNEVAQLKQ 369


>gi|5802980 activating transcription factor 7 isoform 2 [Homo
           sapiens]
          Length = 483

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 160 SPEPPRSSPRQ-TPAPGPAREKSAGKRGPDRGSPEYRQR-RERNNIAVRKSRDKAKRRNQ 217
           SP  P+ SP Q TP+ G  R     +R  D    E RQR  ERN  A  + R K K    
Sbjct: 304 SPAQPQVSPAQPTPSTGGRR-----RRTVDEDPDERRQRFLERNRAAASRCRQKRKLWVS 358

Query: 218 EMQQKLVELSAENEKLHQRVEQLTRDLAGLRQ 249
            +++K  EL+++N +L   V  L  ++A L+Q
Sbjct: 359 SLEKKAEELTSQNIQLSNEVTLLRNEVAQLKQ 390


>gi|194239640 activating transcription factor 7 isoform 1 [Homo
           sapiens]
          Length = 494

 Score = 44.7 bits (104), Expect = 9e-05
 Identities = 33/92 (35%), Positives = 47/92 (51%), Gaps = 7/92 (7%)

Query: 160 SPEPPRSSPRQ-TPAPGPAREKSAGKRGPDRGSPEYRQR-RERNNIAVRKSRDKAKRRNQ 217
           SP  P+ SP Q TP+ G  R     +R  D    E RQR  ERN  A  + R K K    
Sbjct: 315 SPAQPQVSPAQPTPSTGGRR-----RRTVDEDPDERRQRFLERNRAAASRCRQKRKLWVS 369

Query: 218 EMQQKLVELSAENEKLHQRVEQLTRDLAGLRQ 249
            +++K  EL+++N +L   V  L  ++A L+Q
Sbjct: 370 SLEKKAEELTSQNIQLSNEVTLLRNEVAQLKQ 401


>gi|239741753 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 274

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 41/122 (33%), Positives = 48/122 (39%), Gaps = 24/122 (19%)

Query: 88  SNHKAGGAGPLELLPGGPA-------RPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVA 140
           +  + GG GP    PGG           L PG +A +  +REP      A G+  PA   
Sbjct: 45  AGRRDGGWGP----PGGAGDHQTLQRASLLPGGSADKDQEREPSLA---ARGTAPPAPPR 97

Query: 141 ACAQTVVSLAAAG-QPTPPTSPEPPRS------SPR---QTPAPGPAREKSAGKRGPDRG 190
            C  T       G +P PP    PPR        PR     P P PAR   AGK   DRG
Sbjct: 98  QCLPTPCPPLGHGLRPRPPPGTPPPRCPRTLAPGPRGLFPAPPPAPARTGPAGKAAADRG 157

Query: 191 SP 192
            P
Sbjct: 158 RP 159


>gi|163965366 nascent polypeptide-associated complex alpha subunit
            isoform a [Homo sapiens]
          Length = 2078

 Score = 44.3 bits (103), Expect = 1e-04
 Identities = 52/201 (25%), Positives = 66/201 (32%), Gaps = 25/201 (12%)

Query: 11   PARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAA 70
            P +GAP P    P   P   G PG     GA   P    P+    +      A   S   
Sbjct: 1305 PPKGAPTPPAATP---PSPKGSPGTPPPKGAPTPPAVTPPS---PKGTPTLPATTPSSKG 1358

Query: 71   VPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPG--------PAAPRLLKRE 122
             PT     +         +HK G A        GPA P   G        P +P+     
Sbjct: 1359 GPTTPSSKEGPTPPAATPSHKGGPAMTPPSPKRGPAIPSPKGDPTSPAVIPLSPKKAPAT 1418

Query: 123  PDWGDGDAP---GSLLPAQVAACA---QTVVSLAAAGQPTP-----PTSPEPPRSSPRQT 171
            P   +G A    G L P  V   +       S    G  TP     PT P     SP++ 
Sbjct: 1419 PVTREGAATPSKGDLTPPAVTPVSLKKAPATSAPKGGPATPSSKGDPTLPAVTPPSPKEP 1478

Query: 172  PAPGPAREKSAGKRGPDRGSP 192
            PAP      S+ K+ P   +P
Sbjct: 1479 PAPKQVATSSSPKKAPATPAP 1499



 Score = 37.0 bits (84), Expect = 0.018
 Identities = 50/194 (25%), Positives = 61/194 (31%), Gaps = 22/194 (11%)

Query: 13   RGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEP----GAAAPAMYDDESAIDFSAYIDSM 68
            +GAP P+   P    G    P     P  +  P    G A PA     +    S+     
Sbjct: 862  KGAPTPSAVTPLSPKGVTLPPKETPTPSVVNLPFPKEGPATPAPKQAPALSMTSSSPKKA 921

Query: 69   AAVPTLELCHDELFADLFNSNHKAGGAGPLELLP----GGPARPLGP-GPAAPRLLKREP 123
             A P  +         +  S    G   P    P    GGPA P     P  P      P
Sbjct: 922  RATPAPK--------GIPASPSPKGAPTPPAATPPSPKGGPATPSPKWAPTPPAATPPSP 973

Query: 124  DWGDGDAPGSLLPAQVAACAQTVVSLAAA----GQPTPPT-SPEPPRSSPRQTPAPGPAR 178
              G         P   AA   +     A     G PTPP  +P  P+ SP  TP P  A 
Sbjct: 974  KGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAS 1033

Query: 179  EKSAGKRGPDRGSP 192
               A      +GSP
Sbjct: 1034 TPPAATPPSPKGSP 1047



 Score = 35.8 bits (81), Expect = 0.040
 Identities = 52/196 (26%), Positives = 66/196 (33%), Gaps = 26/196 (13%)

Query: 13   RGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVP 72
            +GAP      P   P   G     +  GA   P A  P+     +           AA P
Sbjct: 1215 KGAPTTPAATP---PSPKGGLATPSPKGAPTTPAATPPSPKGGPATPPPKGAPTPPAATP 1271

Query: 73   TLELCHDELFADLFNSNHKAGGAGPLELLP----GGPAR-PLGPGPAAPRLLKREPDWGD 127
                    L   L    HK G   P  + P    GGPA  P    P  P      P    
Sbjct: 1272 P------SLKGGLATPPHK-GAPNPAVVTPPSPKGGPATSPPKGAPTPPAATPPSPKGSP 1324

Query: 128  GDAPGSLLPAQVAACAQT--------VVSLAAAGQPTPPTSPEPPRSSPRQTPAP--GPA 177
            G  P    P   A    +          + ++ G PT P+S E P + P  TP+   GPA
Sbjct: 1325 GTPPPKGAPTPPAVTPPSPKGTPTLPATTPSSKGGPTTPSSKEGP-TPPAATPSHKGGPA 1383

Query: 178  REKSAGKRGPDRGSPE 193
                + KRGP   SP+
Sbjct: 1384 MTPPSPKRGPAIPSPK 1399



 Score = 35.0 bits (79), Expect = 0.069
 Identities = 53/204 (25%), Positives = 63/204 (30%), Gaps = 28/204 (13%)

Query: 10   GPA----RGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYI 65
            GPA    +GAP P    P   P   G P   +  GA   P    P+     +A  F    
Sbjct: 976  GPATPSPKGAPTPPAATP---PSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFP--- 1029

Query: 66   DSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLP---GGPARP-LGPGPAAPRLLKR 121
               A+ P          +       K     P   LP   GGPA P L   P  P     
Sbjct: 1030 -KGASTPPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGPATPSLKGAPTPPAATPP 1088

Query: 122  EPDWGDGDAPGSLLPAQVAACAQTVVSLAAA----GQPTPPT----SPE-----PPRSSP 168
             P  G         P   AA   +     A     G PT P     SP+     PP    
Sbjct: 1089 SPKGGPATPSPKGAPMPPAATPPSPKGGLATPPHKGAPTTPAATPPSPKGGLATPPPKGA 1148

Query: 169  RQTPAPGPAREKSAGKRGPDRGSP 192
              TPA  P   K      P +G+P
Sbjct: 1149 PTTPAATPPSPKGGLATPPPKGAP 1172



 Score = 33.5 bits (75), Expect = 0.20
 Identities = 29/97 (29%), Positives = 33/97 (34%), Gaps = 7/97 (7%)

Query: 103  GGPARPLGPG-PAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAA-----GQPT 156
            GGPA P   G P  P      P  G         P   A    +     AA     G  T
Sbjct: 975  GGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAATPFPKGAST 1034

Query: 157  PPTSPEP-PRSSPRQTPAPGPAREKSAGKRGPDRGSP 192
            PP +  P P+ SP  TP P  A    A      +G P
Sbjct: 1035 PPAATPPSPKGSPAATPLPKGAPTTPAATLPSPKGGP 1071



 Score = 29.3 bits (64), Expect = 3.8
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 8/77 (10%)

Query: 103  GGPARPLGPG-PAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSP 161
            GGPA P   G P  P +    P     + P    P QVA  +    + A       PT P
Sbjct: 1454 GGPATPSSKGDPTLPAVTPPSPK----EPPA---PKQVATSSSPKKAPATPAPMGAPTLP 1506

Query: 162  EPPRSSPRQTPAPGPAR 178
                SSP++ PA   +R
Sbjct: 1507 AVIPSSPKEVPATPSSR 1523



 Score = 28.9 bits (63), Expect = 4.9
 Identities = 46/191 (24%), Positives = 58/191 (30%), Gaps = 39/191 (20%)

Query: 11   PARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAA 70
            PA   P P        P  A  P     P   G P   +P       A+   +   S AA
Sbjct: 966  PAATPPSPKGGPATPSPKGAPTPPAATPPSPKGGPATPSPKGAPTPPAVTPPSPKGSPAA 1025

Query: 71   VPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDA 130
             P                    G + P    P  P       PAA  L K  P       
Sbjct: 1026 TP-----------------FPKGASTPPAATPPSPKG----SPAATPLPKGAPT-----T 1059

Query: 131  PGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAP-----GPAREKSAGKR 185
            P + LP+     A   +     G PTPP +  P       TP+P      PA    + K 
Sbjct: 1060 PAATLPSPKGGPATPSLK----GAPTPPAATPPSPKGGPATPSPKGAPMPPAATPPSPKG 1115

Query: 186  G----PDRGSP 192
            G    P +G+P
Sbjct: 1116 GLATPPHKGAP 1126



 Score = 28.5 bits (62), Expect = 6.4
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 5/63 (7%)

Query: 131 PGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRG 190
           PG  LP   +   Q    L+AA Q +P  SP    S+P + P P    + S+G   P   
Sbjct: 41  PGPTLPPPCSPAPQQC-PLSAANQASPFPSPSTIASTPLEVPFP----QSSSGTALPLGT 95

Query: 191 SPE 193
           +PE
Sbjct: 96  APE 98


>gi|8924246 basic leucine zipper transcription factor, ATF-like 3
           [Homo sapiens]
          Length = 127

 Score = 43.9 bits (102), Expect = 1e-04
 Identities = 23/85 (27%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 169 RQTPAPGPAREKSAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSA 228
           R   APG   +    ++ P+    + R RRE+N +A ++SR K  ++  ++ ++   L  
Sbjct: 14  RSVAAPGNQPQPQPQQQSPEDDDRKVR-RREKNRVAAQRSRKKQTQKADKLHEEYESLEQ 72

Query: 229 ENEKLHQRVEQLTRDLAGLRQFFKQ 253
           EN  L + + +LT +L  L +  K+
Sbjct: 73  ENTMLRREIGKLTEELKHLTEALKE 97


>gi|4885243 FOS-like antigen 1 [Homo sapiens]
          Length = 271

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 44/168 (26%), Positives = 68/168 (40%), Gaps = 18/168 (10%)

Query: 81  LFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVA 140
           +F D       +G  G      GGPA+P     AA +     P      +  ++  +Q  
Sbjct: 1   MFRDFGEPGPSSGNGGGY----GGPAQPPAAAQAAQQKFHLVP------SINTMSGSQEL 50

Query: 141 ACAQTVVSLAAAGQPTPPTSPE--PPRSSPRQTPAPGPAREKSAGKRGPDRGSPEY---- 194
                   L  +  P P T P+  PP+  P    A GP       +R  ++ SPE     
Sbjct: 51  QWMVQPHFLGPSSYPRPLTYPQYSPPQPRPGVIRALGPP--PGVRRRPCEQISPEEEERR 108

Query: 195 RQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKLHQRVEQLTR 242
           R RRERN +A  K R++ K     +Q +  +L  E   L + +E+L +
Sbjct: 109 RVRRERNKLAAAKCRNRRKELTDFLQAETDKLEDEKSGLQREIEELQK 156


>gi|162329583 cleavage and polyadenylation specific factor 6, 68 kD
           subunit [Homo sapiens]
          Length = 551

 Score = 43.5 bits (101), Expect = 2e-04
 Identities = 31/92 (33%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 102 PGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPT----- 156
           P GP  P  PG   P  L   P+ GD   P  L P Q     Q  +     G P      
Sbjct: 246 PPGPPGPPPPGQVLPPPLAGPPNRGDRPPPPVLFPGQ--PFGQPPLGPLPPGPPPPVPGY 303

Query: 157 -PPTSPEPPRSSPRQTPAPGPAREKSAGKRGP 187
            PP  P PP+  P   P PGP   +  G  GP
Sbjct: 304 GPPPGPPPPQQGP--PPPPGPFPPRPPGPLGP 333



 Score = 32.3 bits (72), Expect = 0.44
 Identities = 30/91 (32%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 102 PGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSP 161
           P GP  P  PGP  P L    P    G  PG+  PA           +  A  P PPT+ 
Sbjct: 319 PPGPFPPRPPGPLGPPLTLAPPPHLPGPPPGAPPPAP---------HVNPAFFP-PPTNS 368

Query: 162 EPPRSSPRQTPAPGPAREKSAGKRGPDRGSP 192
             P S  R  P   P        RG D G P
Sbjct: 369 GMPTSDSRGPPPTDPYGRPPPYDRG-DYGPP 398


>gi|33286446 opioid growth factor receptor [Homo sapiens]
          Length = 677

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 32/100 (32%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 93  GGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAA 152
           G  GP E  PG P+   GP PA P     EP     + PG               S    
Sbjct: 506 GRTGPKEGTPGSPSETPGPSPAGP--AGDEPAESPSETPGPRPAGPAGDEPAESPSETPG 563

Query: 153 GQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSP 192
            +P  P   E P  SP +TP P PA        GP R  P
Sbjct: 564 PRPAGPAGDE-PAESPSETPGPSPA--------GPTRDEP 594



 Score = 34.7 bits (78), Expect = 0.090
 Identities = 30/99 (30%), Positives = 35/99 (35%), Gaps = 12/99 (12%)

Query: 95  AGPLELLPG-GPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAG 153
           AGP    P   P+   GP PA P   + EP     + PG               S     
Sbjct: 567 AGPAGDEPAESPSETPGPSPAGPT--RDEPAESPSETPGPRPAGPAGDEPAESPSETPGP 624

Query: 154 QPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSP 192
           +P  P   EP  S P +TP P PA        GP R  P
Sbjct: 625 RPAGPAGDEPAES-PSETPGPSPA--------GPTRDEP 654



 Score = 33.1 bits (74), Expect = 0.26
 Identities = 34/109 (31%), Positives = 44/109 (40%), Gaps = 18/109 (16%)

Query: 85  LFNSNHKAGGAGPLELLPGGPAR-PLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACA 143
           L     + GG  P E +   P R PLG   A     +R+ D G GD+      A  +  A
Sbjct: 424 LRTGTQEVGGQDPGEAVQ--PCRQPLGARVADKVRKRRKVDEGAGDSA-----AVASGGA 476

Query: 144 QTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGPAREKSAGKRGPDRGSP 192
           QT   LA AG P P   P+   S            E + G+ GP  G+P
Sbjct: 477 QT---LALAGSPAPSGHPKAGHSE-------NGVEEDTEGRTGPKEGTP 515


>gi|111118976 collagen, type II, alpha 1 isoform 1 precursor [Homo
            sapiens]
          Length = 1487

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 5    LFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAE---PGALGEPGAAAPAMYDDESAIDF 61
            +  L G      +P  P P  EPG+ G PG   +   PG +G PG   PA    E   + 
Sbjct: 982  IVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA---GEPGREG 1038

Query: 62   SAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKR 121
            S   D             +  A +     + G  G     PG P  P  PGPA P    +
Sbjct: 1039 SPGADGPPG--------RDGAAGVKGDRGETGAVG----APGAPGPPGSPGPAGP--TGK 1084

Query: 122  EPDWGDGDAPGSLLPA 137
            + D G+  A G + P+
Sbjct: 1085 QGDRGEAGAQGPMGPS 1100



 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 55/191 (28%), Positives = 71/191 (37%), Gaps = 26/191 (13%)

Query: 9    DGPARGAPWPAEPAPFYEPGRAGKPGR---GAEPGALGEPGAAAPAMYDDESAIDFSAYI 65
            DGP +GA   + P     PGRAG+PG       PG  GEPG   P+  +        A  
Sbjct: 926  DGP-KGARGDSGP-----PGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ 979

Query: 66   DSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPG-----GPARPLGP----GPAAP 116
              +  +P      +  F  L   + + G  G     PG     GP  P+GP    GPA  
Sbjct: 980  RGIVGLPGQR--GERGFPGLPGPSGEPGKQGA----PGASGDRGPPGPVGPPGLTGPAGE 1033

Query: 117  RLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGP 176
                RE   G    PG    A V        ++ A G P PP SP P   + +Q      
Sbjct: 1034 P--GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEA 1091

Query: 177  AREKSAGKRGP 187
              +   G  GP
Sbjct: 1092 GAQGPMGPSGP 1102



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 49/184 (26%), Positives = 60/184 (32%), Gaps = 61/184 (33%)

Query: 9   DGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSM 68
           D   +GAP P         GR G+PG    PG  G PG   P       A   +   D  
Sbjct: 139 DKGEKGAPGPR--------GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFD-- 188

Query: 69  AAVPTLELCHDELFADLFNSNHKAGGA------GPLELLPGGPARPLGP-GPAAPRLLKR 121
                                 KAGGA      GP+   P GP  P GP G   P+  + 
Sbjct: 189 ---------------------EKAGGAQLGVMQGPMG--PMGPRGPPGPAGAPGPQGFQG 225

Query: 122 EPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSP-------EPPRSSPRQTPAP 174
            P  G+   PG   P            +   G P PP  P       +P ++  R  P P
Sbjct: 226 NP--GEPGEPGVSGP------------MGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 271

Query: 175 GPAR 178
             AR
Sbjct: 272 QGAR 275



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 47/172 (27%), Positives = 60/172 (34%), Gaps = 24/172 (13%)

Query: 27  PGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVPTLELCHDELFADLF 86
           PG  G PG+  E GA G PG A PA    E      +    +   P              
Sbjct: 626 PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPP----------- 674

Query: 87  NSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTV 146
               K G  G    +PG    P   GP   R    E   G   A G   P  +     T 
Sbjct: 675 GEGGKPGDQG----VPGEAGAPGLVGPRGERGFPGER--GSPGAQGLQGPRGLPGTPGTD 728

Query: 147 VSLAAAGQPTPPTSPEPP--RSSPRQTPAPGPAREK----SAGKRGPDRGSP 192
               A+G   PP +  PP  +  P +  A G A  K      G++GP+ G+P
Sbjct: 729 GPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE-GAP 779



 Score = 37.0 bits (84), Expect = 0.018
 Identities = 55/197 (27%), Positives = 63/197 (31%), Gaps = 40/197 (20%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGE---PGAAAPAMYDDESAIDFSAYID 66
           GPA G  +P  P    E G  G  G     G  GE   PG+  PA        D      
Sbjct: 360 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 419

Query: 67  SMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPG--GPARPLG-PGPAAPRLLKREP 123
             A  P +                 AG  G     PG  GP  P G  GP  P+    EP
Sbjct: 420 GSAGAPGI-----------------AGAPG----FPGPRGPPGPQGATGPLGPKGQTGEP 458

Query: 124 -------DWGDGDAPGSLLPAQVAACAQTVVSLAAAGQP--TPPTSPEPPRSSPRQTPAP 174
                  + G    PG   P      A       A G+P    P  P   R +P     P
Sbjct: 459 GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 518

Query: 175 GP---AREKSA-GKRGP 187
           G    A  K A G+RGP
Sbjct: 519 GQDGLAGPKGAPGERGP 535



 Score = 35.4 bits (80), Expect = 0.053
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 10  GPA-----RGAPWPAE----PAPFYEPGRAGKPGRGAEPGALGEPGAAAP 50
           GPA     +GAP P+     P P   PG  GKPG    PG  G PG   P
Sbjct: 648 GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 697



 Score = 35.4 bits (80), Expect = 0.053
 Identities = 57/201 (28%), Positives = 67/201 (33%), Gaps = 44/201 (21%)

Query: 8   LDGPARGAPWPA----EPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSA 63
           L GP  G P PA    E      PG AG  G    PG  GE G   PA +      D   
Sbjct: 787 LTGPI-GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGAD--- 842

Query: 64  YIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGP----GPAAPRLL 119
                   P  +    E           AG  GP    P G   P GP    GP   R  
Sbjct: 843 ------GQPGAKGEQGEA-----GQKGDAGAPGPQG--PSGAPGPQGPTGVTGPKGARGA 889

Query: 120 KREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEP-----PRSSPRQTPAP 174
           +  P  G    PG+         A  V    + G P PP  P P     P+ +   +  P
Sbjct: 890 QGPP--GATGFPGA---------AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP 938

Query: 175 GPAREKS-AGKRGP--DRGSP 192
           G A E    G  GP  ++G P
Sbjct: 939 GRAGEPGLQGPAGPPGEKGEP 959



 Score = 34.7 bits (78), Expect = 0.090
 Identities = 51/188 (27%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 14  GAPWPAEP----APFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMA 69
           G P  A P     P   PG  G+PG     GA G+PG          +     A    + 
Sbjct: 564 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 623

Query: 70  AVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLG----PGPAAPRLLKREP-D 124
             P L          L   + + G AGP    P GPA   G    PGP+  + L   P  
Sbjct: 624 GAPGLR--------GLPGKDGETGAAGPPG--PAGPAGERGEQGAPGPSGFQGLPGPPGP 673

Query: 125 WGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSP-----EPPRSSPRQTPAPGPARE 179
            G+G  PG       A     V      G P    SP     + PR  P      GP  +
Sbjct: 674 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP--K 731

Query: 180 KSAGKRGP 187
            ++G  GP
Sbjct: 732 GASGPAGP 739



 Score = 31.2 bits (69), Expect = 0.99
 Identities = 51/188 (27%), Positives = 58/188 (30%), Gaps = 40/188 (21%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMA 69
           GP      P E       G AG  G   +PG  G PG   PA                  
Sbjct: 321 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA---------------GGP 365

Query: 70  AVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGD 129
             P       E  A    +    G  GP     G P  P  PGPA         + G   
Sbjct: 366 GFPGAPGAKGE--AGPTGARGPEGAQGP----RGEPGTPGSPGPAG-----ASGNPGTDG 414

Query: 130 APGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEP-----PRSSPRQTPAPGPAREKSAGK 184
            PG+   A     A       A G P P   P P     P     QT  PG A  K  G+
Sbjct: 415 IPGAKGSAGAPGIA------GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFK--GE 466

Query: 185 RGPDRGSP 192
           +GP +G P
Sbjct: 467 QGP-KGEP 473



 Score = 31.2 bits (69), Expect = 0.99
 Identities = 54/202 (26%), Positives = 68/202 (33%), Gaps = 31/202 (15%)

Query: 8   LDGPARGAPWPAEPAPFY-------EPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID 60
           L GP +GAP    P+          +PGR G+PG     G  G PG A P      S   
Sbjct: 523 LAGP-KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP 581

Query: 61  FSAYIDSMAAVPTLELCHDEL----FADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAP 116
                D     P  +    +     F     +N + G AG  + LPG P     PG    
Sbjct: 582 GE---DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE-KGLPGAPGLRGLPG---- 633

Query: 117 RLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPG- 175
               ++ + G    PG   PA               G P PP  P      P     PG 
Sbjct: 634 ----KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP-GPPGEGGKPGDQGVPGE 688

Query: 176 ---PAREKSAGKRG--PDRGSP 192
              P      G+RG   +RGSP
Sbjct: 689 AGAPGLVGPRGERGFPGERGSP 710



 Score = 31.2 bits (69), Expect = 0.99
 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 9   DGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAP 50
           DGP +GA  PA P     PG  G PG    PG  G  G A P
Sbjct: 728 DGP-KGASGPAGP-----PGAQGPPGLQGMPGERGAAGIAGP 763



 Score = 28.5 bits (62), Expect = 6.4
 Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 8   LDGPARGAPW-PAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPA 51
           L GP RG P  P    P    G AG PG    PG  G PG    A
Sbjct: 715 LQGP-RGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 758



 Score = 28.1 bits (61), Expect = 8.4
 Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 12   ARGAPWPAEP----APFYEPGRAGKPGRGAEPGALGEPG-----AAAPAMYDDESAIDFS 62
            A G P P  P        E G AG PG    PG  G PG     +A   +   E   D  
Sbjct: 1177 ANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPL 1236

Query: 63   AYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKRE 122
             Y+ +  A   L     E+ A L + N++      +E +         P      L    
Sbjct: 1237 QYMRADQAAGGLRQHDAEVDATLKSLNNQ------IESIRSPEGSRKNPARTCRDLKLCH 1290

Query: 123  PDWGDGD 129
            P+W  GD
Sbjct: 1291 PEWKSGD 1297


>gi|111118974 collagen, type II, alpha 1 isoform 2 precursor [Homo
            sapiens]
          Length = 1418

 Score = 43.1 bits (100), Expect = 3e-04
 Identities = 38/136 (27%), Positives = 52/136 (38%), Gaps = 20/136 (14%)

Query: 5    LFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAE---PGALGEPGAAAPAMYDDESAIDF 61
            +  L G      +P  P P  EPG+ G PG   +   PG +G PG   PA    E   + 
Sbjct: 913  IVGLPGQRGERGFPGLPGPSGEPGKQGAPGASGDRGPPGPVGPPGLTGPA---GEPGREG 969

Query: 62   SAYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKR 121
            S   D             +  A +     + G  G     PG P  P  PGPA P    +
Sbjct: 970  SPGADGPPG--------RDGAAGVKGDRGETGAVG----APGAPGPPGSPGPAGP--TGK 1015

Query: 122  EPDWGDGDAPGSLLPA 137
            + D G+  A G + P+
Sbjct: 1016 QGDRGEAGAQGPMGPS 1031



 Score = 42.0 bits (97), Expect = 6e-04
 Identities = 55/191 (28%), Positives = 71/191 (37%), Gaps = 26/191 (13%)

Query: 9    DGPARGAPWPAEPAPFYEPGRAGKPGR---GAEPGALGEPGAAAPAMYDDESAIDFSAYI 65
            DGP +GA   + P     PGRAG+PG       PG  GEPG   P+  +        A  
Sbjct: 857  DGP-KGARGDSGP-----PGRAGEPGLQGPAGPPGEKGEPGDDGPSGAEGPPGPQGLAGQ 910

Query: 66   DSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPG-----GPARPLGP----GPAAP 116
              +  +P      +  F  L   + + G  G     PG     GP  P+GP    GPA  
Sbjct: 911  RGIVGLPGQR--GERGFPGLPGPSGEPGKQGA----PGASGDRGPPGPVGPPGLTGPAGE 964

Query: 117  RLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPGP 176
                RE   G    PG    A V        ++ A G P PP SP P   + +Q      
Sbjct: 965  P--GREGSPGADGPPGRDGAAGVKGDRGETGAVGAPGAPGPPGSPGPAGPTGKQGDRGEA 1022

Query: 177  AREKSAGKRGP 187
              +   G  GP
Sbjct: 1023 GAQGPMGPSGP 1033



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 49/184 (26%), Positives = 60/184 (32%), Gaps = 61/184 (33%)

Query: 9   DGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSM 68
           D   +GAP P         GR G+PG    PG  G PG   P       A   +   D  
Sbjct: 70  DKGEKGAPGPR--------GRDGEPGTPGNPGPPGPPGPPGPPGLGGNFAAQMAGGFD-- 119

Query: 69  AAVPTLELCHDELFADLFNSNHKAGGA------GPLELLPGGPARPLGP-GPAAPRLLKR 121
                                 KAGGA      GP+   P GP  P GP G   P+  + 
Sbjct: 120 ---------------------EKAGGAQLGVMQGPMG--PMGPRGPPGPAGAPGPQGFQG 156

Query: 122 EPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSP-------EPPRSSPRQTPAP 174
            P  G+   PG   P            +   G P PP  P       +P ++  R  P P
Sbjct: 157 NP--GEPGEPGVSGP------------MGPRGPPGPPGKPGDDGEAGKPGKAGERGPPGP 202

Query: 175 GPAR 178
             AR
Sbjct: 203 QGAR 206



 Score = 38.5 bits (88), Expect = 0.006
 Identities = 47/172 (27%), Positives = 60/172 (34%), Gaps = 24/172 (13%)

Query: 27  PGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMAAVPTLELCHDELFADLF 86
           PG  G PG+  E GA G PG A PA    E      +    +   P              
Sbjct: 557 PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPP----------- 605

Query: 87  NSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGDAPGSLLPAQVAACAQTV 146
               K G  G    +PG    P   GP   R    E   G   A G   P  +     T 
Sbjct: 606 GEGGKPGDQG----VPGEAGAPGLVGPRGERGFPGER--GSPGAQGLQGPRGLPGTPGTD 659

Query: 147 VSLAAAGQPTPPTSPEPP--RSSPRQTPAPGPAREK----SAGKRGPDRGSP 192
               A+G   PP +  PP  +  P +  A G A  K      G++GP+ G+P
Sbjct: 660 GPKGASGPAGPPGAQGPPGLQGMPGERGAAGIAGPKGDRGDVGEKGPE-GAP 710



 Score = 37.0 bits (84), Expect = 0.018
 Identities = 55/197 (27%), Positives = 63/197 (31%), Gaps = 40/197 (20%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGE---PGAAAPAMYDDESAIDFSAYID 66
           GPA G  +P  P    E G  G  G     G  GE   PG+  PA        D      
Sbjct: 291 GPAGGPGFPGAPGAKGEAGPTGARGPEGAQGPRGEPGTPGSPGPAGASGNPGTDGIPGAK 350

Query: 67  SMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPG--GPARPLG-PGPAAPRLLKREP 123
             A  P +                 AG  G     PG  GP  P G  GP  P+    EP
Sbjct: 351 GSAGAPGI-----------------AGAPG----FPGPRGPPGPQGATGPLGPKGQTGEP 389

Query: 124 -------DWGDGDAPGSLLPAQVAACAQTVVSLAAAGQP--TPPTSPEPPRSSPRQTPAP 174
                  + G    PG   P      A       A G+P    P  P   R +P     P
Sbjct: 390 GIAGFKGEQGPKGEPGPAGPQGAPGPAGEEGKRGARGEPGGVGPIGPPGERGAPGNRGFP 449

Query: 175 GP---AREKSA-GKRGP 187
           G    A  K A G+RGP
Sbjct: 450 GQDGLAGPKGAPGERGP 466



 Score = 35.4 bits (80), Expect = 0.053
 Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 9/50 (18%)

Query: 10  GPA-----RGAPWPAE----PAPFYEPGRAGKPGRGAEPGALGEPGAAAP 50
           GPA     +GAP P+     P P   PG  GKPG    PG  G PG   P
Sbjct: 579 GPAGERGEQGAPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAPGLVGP 628



 Score = 35.4 bits (80), Expect = 0.053
 Identities = 57/201 (28%), Positives = 67/201 (33%), Gaps = 44/201 (21%)

Query: 8   LDGPARGAPWPA----EPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSA 63
           L GP  G P PA    E      PG AG  G    PG  GE G   PA +      D   
Sbjct: 718 LTGPI-GPPGPAGANGEKGEVGPPGPAGSAGARGAPGERGETGPPGPAGFAGPPGAD--- 773

Query: 64  YIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGP----GPAAPRLL 119
                   P  +    E           AG  GP    P G   P GP    GP   R  
Sbjct: 774 ------GQPGAKGEQGEA-----GQKGDAGAPGPQG--PSGAPGPQGPTGVTGPKGARGA 820

Query: 120 KREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEP-----PRSSPRQTPAP 174
           +  P  G    PG+         A  V    + G P PP  P P     P+ +   +  P
Sbjct: 821 QGPP--GATGFPGA---------AGRVGPPGSNGNPGPPGPPGPSGKDGPKGARGDSGPP 869

Query: 175 GPAREKS-AGKRGP--DRGSP 192
           G A E    G  GP  ++G P
Sbjct: 870 GRAGEPGLQGPAGPPGEKGEP 890



 Score = 34.7 bits (78), Expect = 0.090
 Identities = 51/188 (27%), Positives = 64/188 (34%), Gaps = 26/188 (13%)

Query: 14  GAPWPAEP----APFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMA 69
           G P  A P     P   PG  G+PG     GA G+PG          +     A    + 
Sbjct: 495 GRPGDAGPQGKVGPSGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLP 554

Query: 70  AVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLG----PGPAAPRLLKREP-D 124
             P L          L   + + G AGP    P GPA   G    PGP+  + L   P  
Sbjct: 555 GAPGLR--------GLPGKDGETGAAGPPG--PAGPAGERGEQGAPGPSGFQGLPGPPGP 604

Query: 125 WGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSP-----EPPRSSPRQTPAPGPARE 179
            G+G  PG       A     V      G P    SP     + PR  P      GP  +
Sbjct: 605 PGEGGKPGDQGVPGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGP--K 662

Query: 180 KSAGKRGP 187
            ++G  GP
Sbjct: 663 GASGPAGP 670



 Score = 31.2 bits (69), Expect = 0.99
 Identities = 51/188 (27%), Positives = 58/188 (30%), Gaps = 40/188 (21%)

Query: 10  GPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAIDFSAYIDSMA 69
           GP      P E       G AG  G   +PG  G PG   PA                  
Sbjct: 252 GPMGPRGLPGERGRTGPAGAAGARGNDGQPGPAGPPGPVGPA---------------GGP 296

Query: 70  AVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKREPDWGDGD 129
             P       E  A    +    G  GP     G P  P  PGPA         + G   
Sbjct: 297 GFPGAPGAKGE--AGPTGARGPEGAQGP----RGEPGTPGSPGPAG-----ASGNPGTDG 345

Query: 130 APGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEP-----PRSSPRQTPAPGPAREKSAGK 184
            PG+   A     A       A G P P   P P     P     QT  PG A  K  G+
Sbjct: 346 IPGAKGSAGAPGIA------GAPGFPGPRGPPGPQGATGPLGPKGQTGEPGIAGFK--GE 397

Query: 185 RGPDRGSP 192
           +GP +G P
Sbjct: 398 QGP-KGEP 404



 Score = 31.2 bits (69), Expect = 0.99
 Identities = 54/202 (26%), Positives = 68/202 (33%), Gaps = 31/202 (15%)

Query: 8   LDGPARGAPWPAEPAPFY-------EPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID 60
           L GP +GAP    P+          +PGR G+PG     G  G PG A P      S   
Sbjct: 454 LAGP-KGAPGERGPSGLAGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAP 512

Query: 61  FSAYIDSMAAVPTLELCHDEL----FADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAP 116
                D     P  +    +     F     +N + G AG  + LPG P     PG    
Sbjct: 513 GE---DGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGE-KGLPGAPGLRGLPG---- 564

Query: 117 RLLKREPDWGDGDAPGSLLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPAPG- 175
               ++ + G    PG   PA               G P PP  P      P     PG 
Sbjct: 565 ----KDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPP-GPPGEGGKPGDQGVPGE 619

Query: 176 ---PAREKSAGKRG--PDRGSP 192
              P      G+RG   +RGSP
Sbjct: 620 AGAPGLVGPRGERGFPGERGSP 641



 Score = 31.2 bits (69), Expect = 0.99
 Identities = 19/42 (45%), Positives = 20/42 (47%), Gaps = 6/42 (14%)

Query: 9   DGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAP 50
           DGP +GA  PA P     PG  G PG    PG  G  G A P
Sbjct: 659 DGP-KGASGPAGP-----PGAQGPPGLQGMPGERGAAGIAGP 694



 Score = 28.5 bits (62), Expect = 6.4
 Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 8   LDGPARGAPW-PAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPA 51
           L GP RG P  P    P    G AG PG    PG  G PG    A
Sbjct: 646 LQGP-RGLPGTPGTDGPKGASGPAGPPGAQGPPGLQGMPGERGAA 689



 Score = 28.1 bits (61), Expect = 8.4
 Identities = 33/127 (25%), Positives = 44/127 (34%), Gaps = 15/127 (11%)

Query: 12   ARGAPWPAEP----APFYEPGRAGKPGRGAEPGALGEPG-----AAAPAMYDDESAIDFS 62
            A G P P  P        E G AG PG    PG  G PG     +A   +   E   D  
Sbjct: 1108 ANGIPGPIGPPGPRGRSGETGPAGPPGNPGPPGPPGPPGPGIDMSAFAGLGPREKGPDPL 1167

Query: 63   AYIDSMAAVPTLELCHDELFADLFNSNHKAGGAGPLELLPGGPARPLGPGPAAPRLLKRE 122
             Y+ +  A   L     E+ A L + N++      +E +         P      L    
Sbjct: 1168 QYMRADQAAGGLRQHDAEVDATLKSLNNQ------IESIRSPEGSRKNPARTCRDLKLCH 1221

Query: 123  PDWGDGD 129
            P+W  GD
Sbjct: 1222 PEWKSGD 1228


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.313    0.133    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,842,186
Number of Sequences: 37866
Number of extensions: 1005535
Number of successful extensions: 21524
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 1026
Number of HSP's that attempted gapping in prelim test: 9619
Number of HSP's gapped (non-prelim): 9367
length of query: 269
length of database: 18,247,518
effective HSP length: 101
effective length of query: 168
effective length of database: 14,423,052
effective search space: 2423072736
effective search space used: 2423072736
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 61 (28.1 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.

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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.