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Search of human proteins with 28872796
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
(345 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens] 714 0.0
gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens] 153 2e-37
gi|28872800 CCAAT/enhancer binding protein epsilon [Homo sapiens] 137 2e-32
gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens] 134 2e-31
gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens] 79 5e-15
gi|110832843 TBP-associated factor 4 [Homo sapiens] 57 3e-08
gi|31542493 D site of albumin promoter (albumin D-box) binding p... 56 4e-08
gi|4758392 forkhead box D1 [Homo sapiens] 54 2e-07
gi|194239643 activating transcription factor 7 isoform 3 [Homo s... 54 3e-07
gi|5802980 activating transcription factor 7 isoform 2 [Homo sap... 54 3e-07
gi|194239640 activating transcription factor 7 isoform 1 [Homo s... 54 3e-07
gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor ... 53 3e-07
gi|40353727 synaptopodin isoform A [Homo sapiens] 53 3e-07
gi|23510413 sorting nexin 26 [Homo sapiens] 52 6e-07
gi|73476377 LBXCOR1 homolog [Homo sapiens] 50 2e-06
gi|122937321 UNC homeobox [Homo sapiens] 50 2e-06
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 50 4e-06
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 50 4e-06
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 50 4e-06
gi|154146199 sal-like 3 [Homo sapiens] 50 4e-06
gi|14602433 Williams Beuren syndrome chromosome region 14 isofor... 49 5e-06
gi|14249534 hypothetical protein LOC84915 [Homo sapiens] 49 5e-06
gi|14602437 Williams Beuren syndrome chromosome region 14 isofor... 49 7e-06
gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens] 49 7e-06
gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sap... 49 7e-06
gi|14602435 Williams Beuren syndrome chromosome region 14 isofor... 49 9e-06
gi|60460889 Myb protein P42POP [Homo sapiens] 49 9e-06
gi|51468067 Sp5 transcription factor [Homo sapiens] 49 9e-06
gi|4885407 hyperpolarization activated cyclic nucleotide-gated p... 48 1e-05
gi|58530845 zyxin [Homo sapiens] 48 1e-05
>gi|28872796 CCAAT/enhancer binding protein beta [Homo sapiens]
Length = 345
Score = 714 bits (1844), Expect = 0.0
Identities = 345/345 (100%), Positives = 345/345 (100%)
Query: 1 MQRLVAWDPACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPA 60
MQRLVAWDPACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPA
Sbjct: 1 MQRLVAWDPACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPA 60
Query: 61 GELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSD 120
GELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSD
Sbjct: 61 GELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSD 120
Query: 121 LFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFE 180
LFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFE
Sbjct: 121 LFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFE 180
Query: 181 PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD 240
PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD
Sbjct: 181 PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD 240
Query: 241 AKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQ 300
AKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQ
Sbjct: 241 AKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQ 300
Query: 301 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC 345
HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC
Sbjct: 301 HKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEPLLASSGHC 345
>gi|28872794 CCAAT/enhancer binding protein alpha [Homo sapiens]
Length = 358
Score = 153 bits (386), Expect = 2e-37
Identities = 125/360 (34%), Positives = 159/360 (44%), Gaps = 81/360 (22%)
Query: 37 AAAYGGK--AAPAAPPAARPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATAT 94
+AA+G A PA PPA P P LG I +HE +ID S Y++P
Sbjct: 28 SAAFGFPRGAGPAQPPAPPAAPEP----LGGICEHETSIDISAYIDPAAFNDEFLADLFQ 83
Query: 95 DTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNC------------KKPAEYGYVSL 142
+ + A P G DF DY G P YG +
Sbjct: 84 HSRQQEKAKAAVGPTGGGGGGDF-------DYPGAPAGPGGAVMPGGAHGPPPGYGCAAA 136
Query: 143 G-----------RLGA-----------------AKGALHPGCFAPLHPPPPPP------- 167
G R+GA AK G F P PPPPPP
Sbjct: 137 GYLDGRLEPLYERVGAPALRPLVIKQEPREEDEAKQLALAGLF-PYQPPPPPPPSHPHPH 195
Query: 168 PPPAELKA-EPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLST 226
PPPA L A F+ A C + + G+ P S
Sbjct: 196 PPPAHLAAPHLQFQIAHCGQT------------------TMHLQPGHPTPPPTPVPSPHP 237
Query: 227 SSSSSPPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVR 286
+ + G P P A A + + KAKK+VDK+S+EY++RRERNNIAVR
Sbjct: 238 APALGAAGLPGPGSALKGLGAAHPDLRASGGSGAGKAKKSVDKNSNEYRVRRERNNIAVR 297
Query: 287 KSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPE-PLLASSGHC 345
KSRDKAK RN+ETQ KVLELT++N+RL+K+VEQLSREL TLR +F+QLPE L+ + G+C
Sbjct: 298 KSRDKAKQRNVETQQKVLELTSDNDRLRKRVEQLSRELDTLRGIFRQLPESSLVKAMGNC 357
>gi|28872800 CCAAT/enhancer binding protein epsilon [Homo sapiens]
Length = 281
Score = 137 bits (344), Expect = 2e-32
Identities = 114/319 (35%), Positives = 145/319 (45%), Gaps = 78/319 (24%)
Query: 50 PAARPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPA 109
P G R GELG + +HE +ID S Y+E
Sbjct: 17 PLEFSGGRAGPGELGDMCEHEASIDLSAYIE----------------------------- 47
Query: 110 SSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPP 169
SG+ LSDLF+ KPA A+G PG A H PP P P
Sbjct: 48 -SGE-EQLLSDLFA--------VKPAP----------EARGLKGPGTPAFPHYLPPDPRP 87
Query: 170 ----------------PAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGY 213
P + ++P KEE P G + G L+ Y
Sbjct: 88 FAYPPHTFGPDRKALGPGIYSSPGSYDPRAVAVKEEPRGPEGSRAASRGSYNPLQ----Y 143
Query: 214 QAVPSGSSGSLSTSSSSSPPGTP-----SPADAKAPPTACYAGAAPAPSQVKSKAKKTVD 268
Q G + ++ + + PG P +P APP + AP+P+ K KK V+
Sbjct: 144 QVAHCGQT-AMHLPPTLAAPGQPLRVLKAPLATAAPPCSPLL-KAPSPAGPLHKGKKAVN 201
Query: 269 KHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELSTLR 328
K S EY++RRERNNIAVRKSRDKAK R LETQ KVLE AENERL+ +VEQL++EL TLR
Sbjct: 202 KDSLEYRLRRERNNIAVRKSRDKAKRRILETQQKVLEYMAENERLRSRVEQLTQELDTLR 261
Query: 329 NLFKQLPEP--LLASSGHC 345
NLF+Q+PE L+ G C
Sbjct: 262 NLFRQIPEAANLIKGVGGC 280
>gi|28872798 CCAAT/enhancer binding protein delta [Homo sapiens]
Length = 269
Score = 134 bits (336), Expect = 2e-31
Identities = 107/324 (33%), Positives = 141/324 (43%), Gaps = 77/324 (23%)
Query: 24 MEVANFYYEADCLAAAYGGKAAPAAPP--AARPGPRPPAGELGSIG-------DHERAID 74
M A F + A + + AP P A +PG G LG G D E AID
Sbjct: 1 MSAALFSLDGPARGAPWPAEPAPFYEPGRAGKPGRGAEPGALGEPGAAAPAMYDDESAID 60
Query: 75 FSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKP 134
FS Y++ + A P H + +DLF+ ++
Sbjct: 61 FSAYIDSMAA----------------------VPTLELCHDELFADLFNSNHKAG----- 93
Query: 135 AEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPG 194
GA L PG P P P P P LK EP + D APG
Sbjct: 94 -----------GAGPLELLPG--GPARPLGPGPAAPRLLKREPDWGDGD--------APG 132
Query: 195 GGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGA-A 253
+P+ + T S + G P+P + PP + A
Sbjct: 133 S-------------------LLPAQVAACAQTVVSLAAAGQPTPPTSPEPPRSSPRQTPA 173
Query: 254 PAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERL 313
P P++ KS K+ D+ S EY+ RRERNNIAVRKSRDKAK RN E Q K++EL+AENE+L
Sbjct: 174 PGPAREKSAGKRGPDRGSPEYRQRRERNNIAVRKSRDKAKRRNQEMQQKLVELSAENEKL 233
Query: 314 QKKVEQLSRELSTLRNLFKQLPEP 337
++VEQL+R+L+ LR FKQLP P
Sbjct: 234 HQRVEQLTRDLAGLRQFFKQLPSP 257
>gi|4502769 CCAAT/enhancer binding protein gamma [Homo sapiens]
Length = 150
Score = 79.3 bits (194), Expect = 5e-15
Identities = 41/81 (50%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
Query: 251 GAAPAPSQVKSKAKKTVDKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAEN 310
G A APS+ +SK +D++SDEY+ RRERNN+AV+KSR K+K + +T +V +L EN
Sbjct: 43 GKAVAPSK-QSKKSSPMDRNSDEYRQRRERNNMAVKKSRLKSKQKAQDTLQRVNQLKEEN 101
Query: 311 ERLQKKVEQLSRELSTLRNLF 331
ERL+ K++ L++ELS L++LF
Sbjct: 102 ERLEAKIKLLTKELSVLKDLF 122
>gi|110832843 TBP-associated factor 4 [Homo sapiens]
Length = 1085
Score = 56.6 bits (135), Expect = 3e-08
Identities = 69/258 (26%), Positives = 88/258 (34%), Gaps = 43/258 (16%)
Query: 10 ACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDH 69
+C P+P E A AA +A P P PGP P G+ G
Sbjct: 136 SCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPGPGPGPGPGPGKPAGPGAA 195
Query: 70 ERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGK 129
+ ++ S L L + A APA + A P P PA+ G
Sbjct: 196 Q-TLNGSAAL--LNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTV--------------- 237
Query: 130 NCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEE 189
+ P G + A P AP PPPPPP PA L PG
Sbjct: 238 -IQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARPPGH---------- 286
Query: 190 AGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACY 249
P G A P A G GS+G+ + + P PA P
Sbjct: 287 ---PAGPPTAAPAVPPPAAAQNG------GSAGA----APAPAPAAGGPAGVSGQPGPGA 333
Query: 250 AGAAPAPSQVKSKAKKTV 267
A AAPAP VK+++ K V
Sbjct: 334 AAAAPAPG-VKAESPKRV 350
Score = 51.6 bits (122), Expect = 1e-06
Identities = 83/255 (32%), Positives = 95/255 (37%), Gaps = 43/255 (16%)
Query: 10 ACLPLPPPPPAFKSMEVANFYYEADCLA-AAYGGKAAPA-APPAARPGPRPPA-GELGSI 66
A LPLP P ++ F A A AA AAPA A PAA P P PPA L
Sbjct: 224 ALLPLPKPAAPGTVIQTPPFVGAAAPPAPAAPSPPAAPAPAAPAAAPPPPPPAPATLARP 283
Query: 67 GDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDY 126
H P P AP P PA A + A APAPAPA+ G
Sbjct: 284 PGH-------PAGPPTAAPAVPPPAAAQNGGSAGA-APAPAPAAGG-------------- 321
Query: 127 GGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPP-PPPPPPAELKAEPGFEPADCK 185
PA G GAA A PG A PP A+ A G PA
Sbjct: 322 -------PA--GVSGQPGPGAAAAAPAPGVKAESPKRVVQAAPPAAQTLAASG--PASTA 370
Query: 186 RKEEAGAPGGGA--GMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKA 243
G GA AA P A G +P G++G+++ S S +P T S A
Sbjct: 371 ASMVIGPTMQGALPSPAAVPPPAPGTPTG---LPKGAAGAVTQSLSRTPTATTSGIRATL 427
Query: 244 PPTACYAGAAPAPSQ 258
PT A P P Q
Sbjct: 428 TPTV-LAPRLPQPPQ 441
Score = 39.3 bits (90), Expect = 0.005
Identities = 65/252 (25%), Positives = 80/252 (31%), Gaps = 52/252 (20%)
Query: 13 PLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPA-APPAARPGPRPPAGELGSIGDHER 71
P P A + + N AA G AAPA P A P P PPAG G
Sbjct: 45 PRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAPGAAPEP-PPAGRARPGG---- 99
Query: 72 AIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNC 131
G PQ P P + A PAP A
Sbjct: 100 -----------GGPQRPGPPSPRRPLVPAGPAPPAA----------------------KL 126
Query: 132 KKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAG 191
+ P E S + AA AP P P P +A PG P
Sbjct: 127 RPPPEGSAGSCAPVPAAAAVAAGPEPAPAGPAKPAGPAALAARAGPGPGPG------PGP 180
Query: 192 APGGGAGMAAGFPYALRAYLGYQA-VPSGSSGSLSTSSSSSPPGTPSPADAKAPP----- 245
PG G G AG P A + G A + S + + + S ++ P P A P
Sbjct: 181 GPGPGPGKPAG-PGAAQTLNGSAALLNSHHAAAPAVSLVNNGPAALLPLPKPAAPGTVIQ 239
Query: 246 TACYAGAAPAPS 257
T + GAA P+
Sbjct: 240 TPPFVGAAAPPA 251
>gi|31542493 D site of albumin promoter (albumin D-box) binding
protein [Homo sapiens]
Length = 325
Score = 56.2 bits (134), Expect = 4e-08
Identities = 78/303 (25%), Positives = 116/303 (38%), Gaps = 61/303 (20%)
Query: 56 PRPPAGELGSIGDHERAIDFS----PYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASS 111
P+ PA L + + A+ + P LE G APA A P P PAP
Sbjct: 41 PKEPASCLLKEKERKAALPAATTPGPGLETAGPADAPAGAVVGGGSPRGRPGPVPAPG-- 98
Query: 112 GQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPA 171
L+ L + + +G V L A F H PP PPPP
Sbjct: 99 -----LLAPLLWE--------RTLPFGDVEYVDLDA---------FLLEHGLPPSPPPPG 136
Query: 172 ELKAEPGFEPADCKRKEEAGAPG--GGAGMAAGFPYA-LRAYLGYQAVPSGSSGSLSTSS 228
P EP+ + + PG G A + +A RA LG SG L++
Sbjct: 137 G----PSPEPSPARTPAPSPGPGSCGSASPRSSPGHAPARAALG---TASGHRAGLTSRD 189
Query: 229 SSSP--PGT--------PSPADAKA----------PPTACYAGAAPAPSQVKSKAKKTV- 267
+ SP P T P PAD P ++ P + KA+K
Sbjct: 190 TPSPVDPDTVEVLMTFEPDPADLALSSIPGHETFDPRRHRFSEEELKPQPIMKKARKIQV 249
Query: 268 --DKHSDEYKIRRERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSRELS 325
++ ++Y RR +NN A ++SRD +++ + + L EN L+++V + +ELS
Sbjct: 250 PEEQKDEKYWSRRYKNNEAAKRSRDARRLKENQISVRAAFLEKENALLRQEVVAVRQELS 309
Query: 326 TLR 328
R
Sbjct: 310 HYR 312
Score = 31.2 bits (69), Expect = 1.4
Identities = 30/105 (28%), Positives = 39/105 (37%), Gaps = 11/105 (10%)
Query: 12 LPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHER 71
LP PPPP S E + A A + G + +A P + PG P LG+ H
Sbjct: 128 LPPSPPPPGGPSPEPS----PARTPAPSPGPGSCGSASPRSSPGHAPARAALGTASGHRA 183
Query: 72 AIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHD 116
+ +P P TFE P PA SS H+
Sbjct: 184 GLT----SRDTPSPVDPDTVEVLMTFE---PDPADLALSSIPGHE 221
>gi|4758392 forkhead box D1 [Homo sapiens]
Length = 465
Score = 54.3 bits (129), Expect = 2e-07
Identities = 54/196 (27%), Positives = 78/196 (39%), Gaps = 43/196 (21%)
Query: 90 PATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAK 149
PA A F PPAP P P H + + YG + + AA
Sbjct: 251 PAAAAALF---PPAPPPPP------HAYGYGPYGCGYGLQLPPYAPPSALFAAAAAAAAA 301
Query: 150 GALHPGCFAPLHPPPPPPPP---PAEL-------------KAEPGFEPADCKRKEEAGAP 193
A HP H PPPPPPP AEL A PG PA A A
Sbjct: 302 AAFHP------HSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASA-----AKAG 350
Query: 194 GGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPT------A 247
G GA A P+++ + +G P+ ++ + + ++++ +PSP+ APP
Sbjct: 351 GPGASALARSPFSIESIIGGSLGPAAAAAA-AAQAAAAAQASPSPSPVAAPPAPGSSGGG 409
Query: 248 CYAGAAPAPSQVKSKA 263
C A AA P+ +++
Sbjct: 410 CAAQAAVGPAAALTRS 425
Score = 45.1 bits (105), Expect = 1e-04
Identities = 67/255 (26%), Positives = 79/255 (30%), Gaps = 45/255 (17%)
Query: 14 LPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHE--R 71
LPP A +S+ + A A GG PAA A P PP G +
Sbjct: 227 LPPNAAAAESLLLRG--------AGAAGGAGDPAAAAALFPPAPPPPPHAYGYGPYGCGY 278
Query: 72 AIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNC 131
+ PY P A A A A F P P P P +
Sbjct: 279 GLQLPPYAPPSALFAAAAAAAAAAAFHPHSPPPPPPPHGAA------------------- 319
Query: 132 KKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAG 191
AE + G GA PG P P A PG
Sbjct: 320 ---AELARTAFGYRPHPLGAALPG----------PLPASAAKAGGPGASALARSPFSIES 366
Query: 192 APGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPA---DAKAPPTAC 248
GG G AA A +A QA PS S + + SS G + A A A +
Sbjct: 367 IIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSGGGCAAQAAVGPAAALTRSL 426
Query: 249 YAGAAPAPSQVKSKA 263
A AA A S V S A
Sbjct: 427 VAAAAAAASSVSSSA 441
Score = 36.2 bits (82), Expect = 0.044
Identities = 37/108 (34%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Query: 6 AWDPACLPLPPPP-PAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELG 64
A+ P P PPPP A + F Y L AA G +A A PG A
Sbjct: 303 AFHPHSPPPPPPPHGAAAELARTAFGYRPHPLGAALPGPLPASAAKAGGPGASALARSPF 362
Query: 65 SIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSG 112
SI E I S A A A A A + +P A PAP SSG
Sbjct: 363 SI---ESIIGGSLGPAAAAAAAAQAAAAAQASPSPSPVAAPPAPGSSG 407
>gi|194239643 activating transcription factor 7 isoform 3 [Homo
sapiens]
Length = 462
Score = 53.5 bits (127), Expect = 3e-07
Identities = 57/196 (29%), Positives = 77/196 (39%), Gaps = 34/196 (17%)
Query: 154 PGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRK--------EEAGAPGGGAGMAAGFPY 205
P P P P PP + P P + K + + GG GM G
Sbjct: 203 PVSMVPNIPGIPGPPVNSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGTAS 262
Query: 206 ALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKK 265
+ A P S + P PSPA + P A P PS + ++
Sbjct: 263 TM-----VTARPEQSQILIQH------PDAPSPAQPQVSP------AQPTPS-TGGRRRR 304
Query: 266 TVDKHSDEYKIR-RERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 324
TVD+ DE + R ERN A + R K K+ + K ELT++N QLS E+
Sbjct: 305 TVDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQN-------IQLSNEV 357
Query: 325 STLRNLFKQLPEPLLA 340
+ LRN QL + LLA
Sbjct: 358 TLLRNEVAQLKQLLLA 373
>gi|5802980 activating transcription factor 7 isoform 2 [Homo
sapiens]
Length = 483
Score = 53.5 bits (127), Expect = 3e-07
Identities = 57/196 (29%), Positives = 77/196 (39%), Gaps = 34/196 (17%)
Query: 154 PGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRK--------EEAGAPGGGAGMAAGFPY 205
P P P P PP + P P + K + + GG GM G
Sbjct: 224 PVSMVPNIPGIPGPPVNSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGTAS 283
Query: 206 ALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKK 265
+ A P S + P PSPA + P A P PS + ++
Sbjct: 284 TM-----VTARPEQSQILIQH------PDAPSPAQPQVSP------AQPTPS-TGGRRRR 325
Query: 266 TVDKHSDEYKIR-RERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 324
TVD+ DE + R ERN A + R K K+ + K ELT++N QLS E+
Sbjct: 326 TVDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQN-------IQLSNEV 378
Query: 325 STLRNLFKQLPEPLLA 340
+ LRN QL + LLA
Sbjct: 379 TLLRNEVAQLKQLLLA 394
>gi|194239640 activating transcription factor 7 isoform 1 [Homo
sapiens]
Length = 494
Score = 53.5 bits (127), Expect = 3e-07
Identities = 57/196 (29%), Positives = 77/196 (39%), Gaps = 34/196 (17%)
Query: 154 PGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRK--------EEAGAPGGGAGMAAGFPY 205
P P P P PP + P P + K + + GG GM G
Sbjct: 235 PVSMVPNIPGIPGPPVNSSGSISPSGHPIPSEAKMRLKATLTHQVSSINGGCGMVVGTAS 294
Query: 206 ALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGAAPAPSQVKSKAKK 265
+ A P S + P PSPA + P A P PS + ++
Sbjct: 295 TM-----VTARPEQSQILIQH------PDAPSPAQPQVSP------AQPTPS-TGGRRRR 336
Query: 266 TVDKHSDEYKIR-RERNNIAVRKSRDKAKMRNLETQHKVLELTAENERLQKKVEQLSREL 324
TVD+ DE + R ERN A + R K K+ + K ELT++N QLS E+
Sbjct: 337 TVDEDPDERRQRFLERNRAAASRCRQKRKLWVSSLEKKAEELTSQN-------IQLSNEV 389
Query: 325 STLRNLFKQLPEPLLA 340
+ LRN QL + LLA
Sbjct: 390 TLLRNEVAQLKQLLLA 405
>gi|153946391 N-methyl-D-aspartate receptor subunit 2D precursor [Homo
sapiens]
Length = 1336
Score = 53.1 bits (126), Expect = 3e-07
Identities = 58/196 (29%), Positives = 67/196 (34%), Gaps = 51/196 (26%)
Query: 37 AAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHERAIDFSPYLEPLGA----PQAPAPAT 92
AA G P +PPAA+P +PP + D E P P GA P PAP
Sbjct: 982 AAPRGAAGRPLSPPAAQPPQKPPPSYFAIVRDKE------PAEPPAGAFPGFPSPPAPPA 1035
Query: 93 ATDTF-----------EAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVS 141
A T + +PPAPA P S + L G
Sbjct: 1036 AAATAVGPPLCRLAFEDESPPAPARWPRSDPESQPLLGP-----------------GAGG 1078
Query: 142 LGRLGAAKGALHPGCFAPLHPPP--PPPPPPAELKAEPGFEPADCKRKEEAGAPGGGA-- 197
G G A G AP PPP PPP L EP P+D + E G G
Sbjct: 1079 AGGTGGAGGG------APAAPPPCRAAPPPCPYLDLEP--SPSDSEDSESLGGASLGGLE 1130
Query: 198 -GMAAGFPYALRAYLG 212
A FPY LG
Sbjct: 1131 PWWFADFPYPYAERLG 1146
Score = 49.7 bits (117), Expect = 4e-06
Identities = 71/263 (26%), Positives = 86/263 (32%), Gaps = 88/263 (33%)
Query: 40 YGGKAAPAAPPAARPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEA 99
Y +A AAPP A+P P P +PL +P PAP
Sbjct: 894 YSCCSAEAAPPPAKPPPPP---------------------QPLPSPAYPAPR-------- 924
Query: 100 APPAPAPAPASSGQHHDF----------------LSDLFSDDYGGKNCKKPAEYGYVSLG 143
PAP PAP + L+D F YG P E + LG
Sbjct: 925 --PAPGPAPFVPRERASVDRWRRTKGAGPPGGAGLADGFHRYYG------PIEPQGLGLG 976
Query: 144 RLGAAKGALHPGCFAPLHPP---PPPPPPPAELKAEPGFEPADCKRKEEAG-----APGG 195
LG A+ A PL PP PP PPP+ EPA+ G AP
Sbjct: 977 -LGEARAAPRGAAGRPLSPPAAQPPQKPPPSYFAIVRDKEPAEPPAGAFPGFPSPPAPPA 1035
Query: 196 GAGMAAGFPYALRAY---------------------LGYQAVPSGSSGSLSTSSSSSPPG 234
A A G P A+ LG A +G +G + P
Sbjct: 1036 AAATAVGPPLCRLAFEDESPPAPARWPRSDPESQPLLGPGAGGAGGTG----GAGGGAPA 1091
Query: 235 TPSPADAKAPPTACYAGAAPAPS 257
P P A APP Y P+PS
Sbjct: 1092 APPPCRA-APPPCPYLDLEPSPS 1113
Score = 48.9 bits (115), Expect = 7e-06
Identities = 41/144 (28%), Positives = 57/144 (39%), Gaps = 36/144 (25%)
Query: 156 CFAPLHPPPPPPPPPAELKAEPGF---EPA--------------DCKRKEEAGAPGGGAG 198
C A PPP PPPP + P + PA D R+ + P GGAG
Sbjct: 897 CSAEAAPPPAKPPPPPQPLPSPAYPAPRPAPGPAPFVPRERASVDRWRRTKGAGPPGGAG 956
Query: 199 MAAGF--------PYALRAYLG-YQAVPSGSSGSLSTSSSSSPPGTPSPA--------DA 241
+A GF P L LG +A P G++G + ++ PP P P+ +
Sbjct: 957 LADGFHRYYGPIEPQGLGLGLGEARAAPRGAAGRPLSPPAAQPPQKPPPSYFAIVRDKEP 1016
Query: 242 KAPPTACYAG--AAPAPSQVKSKA 263
PP + G + PAP + A
Sbjct: 1017 AEPPAGAFPGFPSPPAPPAAAATA 1040
>gi|40353727 synaptopodin isoform A [Homo sapiens]
Length = 903
Score = 53.1 bits (126), Expect = 3e-07
Identities = 62/237 (26%), Positives = 85/237 (35%), Gaps = 51/237 (21%)
Query: 40 YGGKAAPAAP-----PAARPGPRPPAGELGS---IGDHERAIDFSPYLEPLGAPQAPAPA 91
YGG +P +P P A+ PRP + D ++ SP P GA + P+
Sbjct: 641 YGGDISPVSPSRAWSPRAKQAPRPSFSTRNAGIEAQDRRESLPTSPPWTP-GASRPPSSL 699
Query: 92 TAT-----------DTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYV 140
+ + PP P P P S +S L + + P+
Sbjct: 700 DGWVSPGPWEPGRGSSMSSPPPLPPPPPMSPSWSERSVSPLRPET----EARPPSRQLQA 755
Query: 141 SLGR--LGAAK---------GALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEE 189
L R + AA+ GA +P F+P PPPPPPPP P R +
Sbjct: 756 LLARNIINAARRKSASPRSAGAENPRPFSPPRAPPPPPPPP---------PPPPRMRSPQ 806
Query: 190 AGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPT 246
PG A A F A + +P+G S TS S P P P + PT
Sbjct: 807 PARPGSAAVPGAAF-----APIPRSPLPAGPSS--CTSPRSPLPAPPRPFLYRRSPT 856
>gi|23510413 sorting nexin 26 [Homo sapiens]
Length = 1126
Score = 52.4 bits (124), Expect = 6e-07
Identities = 61/209 (29%), Positives = 76/209 (36%), Gaps = 29/209 (13%)
Query: 41 GGKAAPAAPPAARPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAA 100
GG AP P G RP L S E + E LGA APA AT
Sbjct: 613 GGTRAPPQPS----GSRPDTVTLRSAKSEESLSSQASGAELLGAGGAPASAT-------- 660
Query: 101 PPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPL 160
P PA +P S + H L G +L A+G L P +PL
Sbjct: 661 -PTPALSPGRSLRPH-----LIPLLLRGAEAPLTDACQQEMCSKLRGAQGPLGPDMESPL 714
Query: 161 HPPP-----------PPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRA 209
PPP PPP PA L A E A ++++ GG A+ P+
Sbjct: 715 PPPPLSLLRPGGAPPPPPKNPARLMALALAERAQQVAEQQSQQECGGTPPASQSPFHRSL 774
Query: 210 YLGYQAVPSGSSGSLSTSSSSSPPGTPSP 238
L P G+SGS +S + PG P
Sbjct: 775 SLEVGGEPLGTSGSGPPPNSLAHPGAWVP 803
Score = 33.9 bits (76), Expect = 0.22
Identities = 61/226 (26%), Positives = 79/226 (34%), Gaps = 42/226 (18%)
Query: 36 LAAAYGGKAAPAAP---PAARPGPRPPAGELGSIGDHERAIDF----SPYLEPLGAPQAP 88
L A GG+ AP A P + P P G S E F P L PLG P
Sbjct: 842 LRAGGGGRDAPEAAAQSPCSVPSQVPTPGFF-SPAPRECLPPFLGVPKPGLYPLGPPSFQ 900
Query: 89 APATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAA 148
P++ + ++ PAP +++ + S G P + + RL A+
Sbjct: 901 -PSSPAPVWRSSLGPPAPLDRGENLYYEIGASEGSPYSGPTRSWSP--FRSMPPDRLNAS 957
Query: 149 KGALHPGCFAPLHPPP------PPPP---PPAELKAEPGFEPADCKRKEEAGAPGGGAGM 199
G L G PLH P PP P PP L PA R+ P
Sbjct: 958 YGML--GQSPPLHRSPDFLLSYPPAPSCFPPDHLGYSAPQHPA---RRPTPPEP------ 1006
Query: 200 AAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP 245
Y+ P G S + +SSSSSPP P PP
Sbjct: 1007 ---------LYVNLALGPRGPSPA--SSSSSSPPAHPRSRSDPGPP 1041
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 50.4 bits (119), Expect = 2e-06
Identities = 86/335 (25%), Positives = 121/335 (36%), Gaps = 68/335 (20%)
Query: 10 ACLPLPPPPPAFKSMEVANF---YYEADCLAAAYG-GKAAPAAPPAARPGPRPPAGELGS 65
A LP PPPPPA K V+ F + + +A YG + A A PA PGP +G S
Sbjct: 532 APLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVS 591
Query: 66 ---IGDHERAID-FSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDL 121
+ + + + SP ++ P+ + E A P+ S+G
Sbjct: 592 PDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEETEPSAPSAG--------- 642
Query: 122 FSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAP-----LHPPPPPPPPPAELKAE 176
GG + ++P G S GA A P +P L PPP P +L AE
Sbjct: 643 -----GGPDGEQPT--GPPSATSSGADGPANSPDGGSPRPRRRLGPPPAGRPAFGDLAAE 695
Query: 177 PGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTP 236
D R+ E P GG G Y LR G P G P
Sbjct: 696 ------DLVRRPERSPPSGGGG------YELREPCG-------------------PLGGP 724
Query: 237 SPADAKAPPTACYAGAA-----PAPSQVKSKAKKTVDKHSDEYKI--RRERNNIAVRKSR 289
+PA AP + +A PA S V + DK + R + ++S
Sbjct: 725 APAKVFAPERDEHVKSAAVALGPAASYVCTPEAHEPDKEDNHSPADDLETRKSYPDQRSI 784
Query: 290 DKAKMRNLETQHKVLELTAENERL-QKKVEQLSRE 323
+ N + L L L +K +E L+RE
Sbjct: 785 SQPSPANTDRGEDGLTLDVTGTHLVEKDIENLARE 819
Score = 42.4 bits (98), Expect = 6e-04
Identities = 71/268 (26%), Positives = 89/268 (33%), Gaps = 61/268 (22%)
Query: 9 PACLPLPPPP-PAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRP-----PAGE 62
PA LP P PA +S +A +AAA AA AA A P P PA E
Sbjct: 449 PAAGSLPVPSYPAAQS--------QAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKE 500
Query: 63 LGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAP------PAPAPAPASSGQHHD 116
G +G ER P + P TD EA P P P P PA G +
Sbjct: 501 SG-LGAEERC--------PSALSRGPLDEDGTD--EALPPPLAPLPPPPPPPARKGSYVS 549
Query: 117 FLSDLFSDD-------------YGGKNCKKP----AEYGYVSLGRLGAAKGALHPGCFAP 159
+ D YG + P GYVS L ++G+ +P
Sbjct: 550 AFRPVVKDTESIAKLYGSAREAYGAGPARGPGPGAGSGGYVSPDFL--SEGSSSYNSASP 607
Query: 160 LHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSG 219
P E P E D + + E AP G G P PS
Sbjct: 608 DVDTADEPEVDVESNRFPDDE--DAQEETEPSAPSAGGGPDGEQP---------TGPPSA 656
Query: 220 SSGSLSTSSSSSPPGTPSPADAKAPPTA 247
+S ++S G+P P PP A
Sbjct: 657 TSSGADGPANSPDGGSPRPRRRLGPPPA 684
Score = 34.7 bits (78), Expect = 0.13
Identities = 59/196 (30%), Positives = 72/196 (36%), Gaps = 28/196 (14%)
Query: 85 PQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYG-GKNCKKPAEYGYVSLG 143
P A + A A AA A A A A SG + + G G + P+ L
Sbjct: 460 PAAQSQAKAVAAAVAAAAAAAAAAAGSGAPEPLDGAEPAKESGLGAEERCPSALSRGPLD 519
Query: 144 RLGAAKGALHPGCFAPLHPPPPPPPPPAELKA-EPGFEPADCKRKEEAGAPGG-----GA 197
G + AL P PL P PPPPPPPA + F P + A G GA
Sbjct: 520 EDGTDE-ALPP----PLAPLPPPPPPPARKGSYVSAFRPVVKDTESIAKLYGSAREAYGA 574
Query: 198 GMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGT-------------PSPADA--K 242
G A G P GY + S GS S +S+S T P DA +
Sbjct: 575 GPARG-PGPGAGSGGYVSPDFLSEGSSSYNSASPDVDTADEPEVDVESNRFPDDEDAQEE 633
Query: 243 APPTACYAGAAPAPSQ 258
P+A AG P Q
Sbjct: 634 TEPSAPSAGGGPDGEQ 649
Score = 28.5 bits (62), Expect = 9.2
Identities = 25/78 (32%), Positives = 28/78 (35%), Gaps = 19/78 (24%)
Query: 162 PPPPPPPPPAELKAEPGFE-PADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGS 220
P PPPP P L G PA G PGGGAG+ + Y +P S
Sbjct: 293 PGPPPPHPQRGLGLATGASGPAG------PGGPGGGAGVRS-----------YPVIPVPS 335
Query: 221 SGSLSTSSSSSPPGTPSP 238
G PP P P
Sbjct: 336 KG-FGLLQKLPPPLFPHP 352
>gi|122937321 UNC homeobox [Homo sapiens]
Length = 531
Score = 50.4 bits (119), Expect = 2e-06
Identities = 47/159 (29%), Positives = 56/159 (35%), Gaps = 34/159 (21%)
Query: 37 AAAYGGKAAPAAPPAARPGPR-PPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATD 95
AA GG AP A P P PPA + F + P GAP + + D
Sbjct: 394 AALKGGAGLEPAPKDAPPAPAVPPAPPAQA--------SFGAFSGPGGAPDSAFARRSPD 445
Query: 96 TFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPG 155
A+P APAPAPA L+ + + GG +C G
Sbjct: 446 AV-ASPGAPAPAPAPFRD----LASAAATEGGGGDCADAGTAG----------------- 483
Query: 156 CFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPG 194
P PPP P P P P EPA C E A G
Sbjct: 484 ---PAPPPPAPSPRPGPRPPSPAEEPATCGVPEPGAAAG 519
Score = 37.4 bits (85), Expect = 0.020
Identities = 71/279 (25%), Positives = 87/279 (31%), Gaps = 68/279 (24%)
Query: 13 PLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPA---------------ARPGPR 57
P PPPPA K A AA A P PPA A P PR
Sbjct: 246 PPEPPPPAAKGPG-------AHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPR 298
Query: 58 P--PA-------GELGSIGDHERAIDFSPYLEPLGAPQ------------APAPATATDT 96
P PA G ++ ER P P + A A A
Sbjct: 299 PGRPADKDAASCGPGAAVAAVERGAAGLPKASPFSVESLLSDSPPRRKAASNAAAAAAAG 358
Query: 97 FEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGC 156
+ AP P G+ H L + +P + G A L P
Sbjct: 359 LDFAPGLPCAPRTLIGKGHFLLYPI----------TQPLGFLVPQAALKGGA--GLEP-- 404
Query: 157 FAPLHPPPPP---PPPPAELK----AEPGFEP--ADCKRKEEAGAPGGGAGMAAGFPYAL 207
AP PP P P PPA+ + PG P A +R +A A GA A P+
Sbjct: 405 -APKDAPPAPAVPPAPPAQASFGAFSGPGGAPDSAFARRSPDAVA-SPGAPAPAPAPFRD 462
Query: 208 RAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPT 246
A G T+ + PP PSP PP+
Sbjct: 463 LASAAATEGGGGDCADAGTAGPAPPPPAPSPRPGPRPPS 501
Score = 30.4 bits (67), Expect = 2.4
Identities = 28/99 (28%), Positives = 39/99 (39%), Gaps = 12/99 (12%)
Query: 194 GGGAGMAAGFPYALRAY-----LGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPT-- 246
GG G GFPY L + G+Q + ++ S+ S G+ + A + PT
Sbjct: 15 GGSLGGVVGFPYPLGHHHVYELAGHQLQSAAAAASVPFSIDGLLGGSCAAAASVVNPTPL 74
Query: 247 ---ACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERNN 282
AC G P ++ DK S K RR R N
Sbjct: 75 LPAACGVGGDGQPFKLSDSGDP--DKESPGCKRRRTRTN 111
Score = 30.0 bits (66), Expect = 3.2
Identities = 52/202 (25%), Positives = 63/202 (31%), Gaps = 33/202 (16%)
Query: 85 PQAPAPAT------ATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYG 138
P+ P PA A+ AP P PA F S +PA+
Sbjct: 247 PEPPPPAAKGPGAHASGAAGTAPAPPGEPPAPGTCDPAFYPSQRSGAGPQPRPGRPADKD 306
Query: 139 YVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAG 198
S G GAA A+ G A P P + L P P A A G
Sbjct: 307 AASCGP-GAAVAAVERG--AAGLPKASPFSVESLLSDSP---PRRKAASNAAAAAAAGLD 360
Query: 199 MAAGFPYALRAYLGY-----------------QAVPSGSSGSLSTSSSSSPPGTPSPADA 241
A G P A R +G QA G +G L + +PP +PA
Sbjct: 361 FAPGLPCAPRTLIGKGHFLLYPITQPLGFLVPQAALKGGAG-LEPAPKDAPP---APAVP 416
Query: 242 KAPPTACYAGAAPAPSQVKSKA 263
APP GA P A
Sbjct: 417 PAPPAQASFGAFSGPGGAPDSA 438
Score = 28.5 bits (62), Expect = 9.2
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 211 LGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAP--PTACYAGAAPAP 256
L + PS S S S PP P PA AK P + AG APAP
Sbjct: 225 LSLHSAPSSDSDSGGGGLSPEPPEPPPPA-AKGPGAHASGAAGTAPAP 271
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 49.7 bits (117), Expect = 4e-06
Identities = 62/243 (25%), Positives = 78/243 (32%), Gaps = 30/243 (12%)
Query: 13 PLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHER- 71
P PP P+F+ ++ D + +GG P PGP P G G G+ R
Sbjct: 868 PPGPPGPSFRHDKLTFI----DMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRF 923
Query: 72 AIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPA-----PASSGQHHDFLSDLFSDDY 126
++ S P G P P F P P P P +GQ
Sbjct: 924 GVNSSDVPGPAGLPGVPG-REGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHK 982
Query: 127 GGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKR 186
G K PA G G + A PG P PP PP PP PG PA
Sbjct: 983 GSKGAPGPA-------GARGESGLAGAPGPAGPPGPPGPPGPP------GPGL-PAGFDD 1028
Query: 187 KEEAGAPGGGAGMAAGFPYALRAYLGYQAVPS-----GSSGSLSTSSSSSPPGTPSPADA 241
E +G P +A P G + P G+ G + PG P
Sbjct: 1029 MEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGI 1088
Query: 242 KAP 244
P
Sbjct: 1089 AGP 1091
Score = 40.0 bits (92), Expect = 0.003
Identities = 79/304 (25%), Positives = 94/304 (30%), Gaps = 80/304 (26%)
Query: 12 LPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDH-- 69
LP PP PP V + + + G + P A PGP P G LGS G+
Sbjct: 1117 LPGPPGPPG----PVVYVSEQDGSVLSVPGPEGRPGF--AGFPGPAGPKGNLGSKGERGS 1170
Query: 70 --------ERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDL 121
E FSP LG Q A + PP P P G+ F
Sbjct: 1171 PGPKGEKGEPGSIFSPDGGALGPAQKGAKG---EPGFRGPPGPYGRPGYKGE-IGFPGRP 1226
Query: 122 FSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPP-----------------P 164
G +K E G SLG G PG P PP P
Sbjct: 1227 GRPGMNGLKGEK-GEPGDASLG-FGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGP 1284
Query: 165 P-------------------PPPPP-----------AELKAEPGFEPADCKRKEEAGAPG 194
P PP PP AE+K E G + D +K E G PG
Sbjct: 1285 PGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKG-DRGDAGQKGERGEPG 1343
Query: 195 GGA--GMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGA 252
GG G + P GY +P S+ G P P + PP Y G
Sbjct: 1344 GGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR--------GQPGPPGPQGPPGIGYEGR 1395
Query: 253 APAP 256
P
Sbjct: 1396 QGPP 1399
Score = 38.1 bits (87), Expect = 0.012
Identities = 55/214 (25%), Positives = 68/214 (31%), Gaps = 54/214 (25%)
Query: 41 GGKAAPAAPPAARPGPRPPAGELGSIGDHERA--ID-----FSPYLEPLGAPQAPAPATA 93
G K P PGP+ P G G H++ ID F LE L P+
Sbjct: 850 GDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRG------ 903
Query: 94 TDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSL-GRLGAAKGAL 152
PP P P G+ F G + P G + GR G
Sbjct: 904 ----FPGPPGPPGVPGLPGEPGRF---------GVNSSDVPGPAGLPGVPGREGP----- 945
Query: 153 HPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGG-GAGMAAGFPYALRAYL 211
P P P PP P + PG EAGAPG G+ A G
Sbjct: 946 ------PGFPGLPGPPGPPGREGPPG-RTGQKGSLGEAGAPGHKGSKGAPG--------- 989
Query: 212 GYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP 245
P+G+ G + + P G P P PP
Sbjct: 990 -----PAGARGESGLAGAPGPAGPPGPPGPPGPP 1018
Score = 35.0 bits (79), Expect = 0.098
Identities = 54/211 (25%), Positives = 64/211 (30%), Gaps = 34/211 (16%)
Query: 53 RPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEA------------- 99
RPG GE G GD P G P P P T +++
Sbjct: 1228 RPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPP-GTPVYDSNVFAESSRPGPPG 1286
Query: 100 -----APPAPAPA------PASSGQH-HDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGA 147
PP P A P GQ DFL L ++ G K + A G G
Sbjct: 1287 LPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQ-LEAEMKGEKGDRGDAG----QKGERGE 1341
Query: 148 AKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYAL 207
G G F P PP PP P PG + + + P G G+
Sbjct: 1342 PGGG---GFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGP 1398
Query: 208 RAYLGYQAVPSGSSGSLSTSSSSSPPGTPSP 238
G PS T S PPG P P
Sbjct: 1399 PGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1429
Score = 30.4 bits (67), Expect = 2.4
Identities = 30/119 (25%), Positives = 38/119 (31%), Gaps = 5/119 (4%)
Query: 145 LGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKR---KEEAGAPGGGAGMAA 201
LG A+ L A L P P PPP G D + +E+ GA
Sbjct: 670 LGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLP 729
Query: 202 GFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP-TACYAGAAPAPSQV 259
G ++ + G P G PG P P PP + C G P V
Sbjct: 730 GSD-SVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPV 787
Score = 28.9 bits (63), Expect = 7.0
Identities = 63/229 (27%), Positives = 74/229 (32%), Gaps = 37/229 (16%)
Query: 55 GPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAP---------ATATDTFEAAPPAP- 104
GP+ P G+ GS G+ P + +G P P P + D + P P
Sbjct: 1090 GPQGPKGDRGSRGEKG-----DPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPE 1144
Query: 105 -----APAPASSGQHHDFLSDLFSDDYGGKNCK-KPAEYGYVSLGRLGAA-KGAL-HPGC 156
A P +G + S G K K +P G LG A KGA PG
Sbjct: 1145 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPG- 1203
Query: 157 FAPLHPPPPPPPPPAELKAEPGF-----EPADCKRKEEAGAPGG---GAGMAA-GFPYAL 207
PP P P K E GF P K E G PG G GM P
Sbjct: 1204 ---FRGPPGPYGRPG-YKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGP 1259
Query: 208 RAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGAAPAP 256
G P S + SS PPG P P A P P
Sbjct: 1260 PGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGP 1308
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 49.7 bits (117), Expect = 4e-06
Identities = 62/243 (25%), Positives = 78/243 (32%), Gaps = 30/243 (12%)
Query: 13 PLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHER- 71
P PP P+F+ ++ D + +GG P PGP P G G G+ R
Sbjct: 453 PPGPPGPSFRHDKLTFI----DMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRF 508
Query: 72 AIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPA-----PASSGQHHDFLSDLFSDDY 126
++ S P G P P F P P P P +GQ
Sbjct: 509 GVNSSDVPGPAGLPGVPG-REGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHK 567
Query: 127 GGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKR 186
G K PA G G + A PG P PP PP PP PG PA
Sbjct: 568 GSKGAPGPA-------GARGESGLAGAPGPAGPPGPPGPPGPP------GPGL-PAGFDD 613
Query: 187 KEEAGAPGGGAGMAAGFPYALRAYLGYQAVPS-----GSSGSLSTSSSSSPPGTPSPADA 241
E +G P +A P G + P G+ G + PG P
Sbjct: 614 MEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGI 673
Query: 242 KAP 244
P
Sbjct: 674 AGP 676
Score = 40.0 bits (92), Expect = 0.003
Identities = 79/304 (25%), Positives = 94/304 (30%), Gaps = 80/304 (26%)
Query: 12 LPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDH-- 69
LP PP PP V + + + G + P A PGP P G LGS G+
Sbjct: 702 LPGPPGPPG----PVVYVSEQDGSVLSVPGPEGRPGF--AGFPGPAGPKGNLGSKGERGS 755
Query: 70 --------ERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDL 121
E FSP LG Q A + PP P P G+ F
Sbjct: 756 PGPKGEKGEPGSIFSPDGGALGPAQKGAKG---EPGFRGPPGPYGRPGYKGE-IGFPGRP 811
Query: 122 FSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPP-----------------P 164
G +K E G SLG G PG P PP P
Sbjct: 812 GRPGMNGLKGEK-GEPGDASLG-FGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGP 869
Query: 165 P-------------------PPPPP-----------AELKAEPGFEPADCKRKEEAGAPG 194
P PP PP AE+K E G + D +K E G PG
Sbjct: 870 PGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKG-DRGDAGQKGERGEPG 928
Query: 195 GGA--GMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGA 252
GG G + P GY +P S+ G P P + PP Y G
Sbjct: 929 GGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR--------GQPGPPGPQGPPGIGYEGR 980
Query: 253 APAP 256
P
Sbjct: 981 QGPP 984
Score = 38.1 bits (87), Expect = 0.012
Identities = 55/214 (25%), Positives = 68/214 (31%), Gaps = 54/214 (25%)
Query: 41 GGKAAPAAPPAARPGPRPPAGELGSIGDHERA--ID-----FSPYLEPLGAPQAPAPATA 93
G K P PGP+ P G G H++ ID F LE L P+
Sbjct: 435 GDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRG------ 488
Query: 94 TDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSL-GRLGAAKGAL 152
PP P P G+ F G + P G + GR G
Sbjct: 489 ----FPGPPGPPGVPGLPGEPGRF---------GVNSSDVPGPAGLPGVPGREGP----- 530
Query: 153 HPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGG-GAGMAAGFPYALRAYL 211
P P P PP P + PG EAGAPG G+ A G
Sbjct: 531 ------PGFPGLPGPPGPPGREGPPG-RTGQKGSLGEAGAPGHKGSKGAPG--------- 574
Query: 212 GYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP 245
P+G+ G + + P G P P PP
Sbjct: 575 -----PAGARGESGLAGAPGPAGPPGPPGPPGPP 603
Score = 35.0 bits (79), Expect = 0.098
Identities = 54/211 (25%), Positives = 64/211 (30%), Gaps = 34/211 (16%)
Query: 53 RPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEA------------- 99
RPG GE G GD P G P P P T +++
Sbjct: 813 RPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPP-GTPVYDSNVFAESSRPGPPG 871
Query: 100 -----APPAPAPA------PASSGQH-HDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGA 147
PP P A P GQ DFL L ++ G K + A G G
Sbjct: 872 LPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQ-LEAEMKGEKGDRGDAG----QKGERGE 926
Query: 148 AKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYAL 207
G G F P PP PP P PG + + + P G G+
Sbjct: 927 PGGG---GFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGP 983
Query: 208 RAYLGYQAVPSGSSGSLSTSSSSSPPGTPSP 238
G PS T S PPG P P
Sbjct: 984 PGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1014
Score = 30.4 bits (67), Expect = 2.4
Identities = 30/119 (25%), Positives = 38/119 (31%), Gaps = 5/119 (4%)
Query: 145 LGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKR---KEEAGAPGGGAGMAA 201
LG A+ L A L P P PPP G D + +E+ GA
Sbjct: 255 LGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLP 314
Query: 202 GFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP-TACYAGAAPAPSQV 259
G ++ + G P G PG P P PP + C G P V
Sbjct: 315 GSD-SVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPV 372
Score = 28.9 bits (63), Expect = 7.0
Identities = 63/229 (27%), Positives = 74/229 (32%), Gaps = 37/229 (16%)
Query: 55 GPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAP---------ATATDTFEAAPPAP- 104
GP+ P G+ GS G+ P + +G P P P + D + P P
Sbjct: 675 GPQGPKGDRGSRGEKG-----DPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPE 729
Query: 105 -----APAPASSGQHHDFLSDLFSDDYGGKNCK-KPAEYGYVSLGRLGAA-KGAL-HPGC 156
A P +G + S G K K +P G LG A KGA PG
Sbjct: 730 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPG- 788
Query: 157 FAPLHPPPPPPPPPAELKAEPGF-----EPADCKRKEEAGAPGG---GAGMAA-GFPYAL 207
PP P P K E GF P K E G PG G GM P
Sbjct: 789 ---FRGPPGPYGRPG-YKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGP 844
Query: 208 RAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGAAPAP 256
G P S + SS PPG P P A P P
Sbjct: 845 PGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGP 893
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 49.7 bits (117), Expect = 4e-06
Identities = 62/243 (25%), Positives = 78/243 (32%), Gaps = 30/243 (12%)
Query: 13 PLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHER- 71
P PP P+F+ ++ D + +GG P PGP P G G G+ R
Sbjct: 633 PPGPPGPSFRHDKLTFI----DMEGSGFGGDLEALRGPRGFPGPPGPPGVPGLPGEPGRF 688
Query: 72 AIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPA-----PASSGQHHDFLSDLFSDDY 126
++ S P G P P F P P P P +GQ
Sbjct: 689 GVNSSDVPGPAGLPGVPG-REGPPGFPGLPGPPGPPGREGPPGRTGQKGSLGEAGAPGHK 747
Query: 127 GGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKR 186
G K PA G G + A PG P PP PP PP PG PA
Sbjct: 748 GSKGAPGPA-------GARGESGLAGAPGPAGPPGPPGPPGPP------GPGL-PAGFDD 793
Query: 187 KEEAGAPGGGAGMAAGFPYALRAYLGYQAVPS-----GSSGSLSTSSSSSPPGTPSPADA 241
E +G P +A P G + P G+ G + PG P
Sbjct: 794 MEGSGGPFWSTARSADGPQGPPGLPGLKGDPGVPGLPGAKGEVGADGVPGFPGLPGREGI 853
Query: 242 KAP 244
P
Sbjct: 854 AGP 856
Score = 40.0 bits (92), Expect = 0.003
Identities = 79/304 (25%), Positives = 94/304 (30%), Gaps = 80/304 (26%)
Query: 12 LPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDH-- 69
LP PP PP V + + + G + P A PGP P G LGS G+
Sbjct: 882 LPGPPGPPG----PVVYVSEQDGSVLSVPGPEGRPGF--AGFPGPAGPKGNLGSKGERGS 935
Query: 70 --------ERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDL 121
E FSP LG Q A + PP P P G+ F
Sbjct: 936 PGPKGEKGEPGSIFSPDGGALGPAQKGAKG---EPGFRGPPGPYGRPGYKGE-IGFPGRP 991
Query: 122 FSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPP-----------------P 164
G +K E G SLG G PG P PP P
Sbjct: 992 GRPGMNGLKGEK-GEPGDASLG-FGMRGMPGPPGPPGPPGPPGTPVYDSNVFAESSRPGP 1049
Query: 165 P-------------------PPPPP-----------AELKAEPGFEPADCKRKEEAGAPG 194
P PP PP AE+K E G + D +K E G PG
Sbjct: 1050 PGLPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQLEAEMKGEKG-DRGDAGQKGERGEPG 1108
Query: 195 GGA--GMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGA 252
GG G + P GY +P S+ G P P + PP Y G
Sbjct: 1109 GGGFFGSSLPGPPGPPGPRGYPGIPGPKGESIR--------GQPGPPGPQGPPGIGYEGR 1160
Query: 253 APAP 256
P
Sbjct: 1161 QGPP 1164
Score = 38.1 bits (87), Expect = 0.012
Identities = 55/214 (25%), Positives = 68/214 (31%), Gaps = 54/214 (25%)
Query: 41 GGKAAPAAPPAARPGPRPPAGELGSIGDHERA--ID-----FSPYLEPLGAPQAPAPATA 93
G K P PGP+ P G G H++ ID F LE L P+
Sbjct: 615 GDKGDPGVGERGPPGPQGPPGPPGPSFRHDKLTFIDMEGSGFGGDLEALRGPRG------ 668
Query: 94 TDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSL-GRLGAAKGAL 152
PP P P G+ F G + P G + GR G
Sbjct: 669 ----FPGPPGPPGVPGLPGEPGRF---------GVNSSDVPGPAGLPGVPGREGP----- 710
Query: 153 HPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGG-GAGMAAGFPYALRAYL 211
P P P PP P + PG EAGAPG G+ A G
Sbjct: 711 ------PGFPGLPGPPGPPGREGPPG-RTGQKGSLGEAGAPGHKGSKGAPG--------- 754
Query: 212 GYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP 245
P+G+ G + + P G P P PP
Sbjct: 755 -----PAGARGESGLAGAPGPAGPPGPPGPPGPP 783
Score = 35.0 bits (79), Expect = 0.098
Identities = 54/211 (25%), Positives = 64/211 (30%), Gaps = 34/211 (16%)
Query: 53 RPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEA------------- 99
RPG GE G GD P G P P P T +++
Sbjct: 993 RPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPGPPGPP-GTPVYDSNVFAESSRPGPPG 1051
Query: 100 -----APPAPAPA------PASSGQH-HDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGA 147
PP P A P GQ DFL L ++ G K + A G G
Sbjct: 1052 LPGNQGPPGPKGAKGEVGPPGPPGQFPFDFLQ-LEAEMKGEKGDRGDAG----QKGERGE 1106
Query: 148 AKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYAL 207
G G F P PP PP P PG + + + P G G+
Sbjct: 1107 PGGG---GFFGSSLPGPPGPPGPRGYPGIPGPKGESIRGQPGPPGPQGPPGIGYEGRQGP 1163
Query: 208 RAYLGYQAVPSGSSGSLSTSSSSSPPGTPSP 238
G PS T S PPG P P
Sbjct: 1164 PGPPGPPGPPSFPGPHRQTISVPGPPGPPGP 1194
Score = 30.4 bits (67), Expect = 2.4
Identities = 30/119 (25%), Positives = 38/119 (31%), Gaps = 5/119 (4%)
Query: 145 LGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKR---KEEAGAPGGGAGMAA 201
LG A+ L A L P P PPP G D + +E+ GA
Sbjct: 435 LGDARELLREETGAALKPRLPAPPPVTTPPLAGGSSTEDSRSEEVEEQTTVASLGAQTLP 494
Query: 202 GFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP-TACYAGAAPAPSQV 259
G ++ + G P G PG P P PP + C G P V
Sbjct: 495 GSD-SVSTWDGSVRTPGGRVKEGGLKGQKGEPGVPGPPGRAGPPGSPCLPGPPGLPCPV 552
Score = 28.9 bits (63), Expect = 7.0
Identities = 63/229 (27%), Positives = 74/229 (32%), Gaps = 37/229 (16%)
Query: 55 GPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAP---------ATATDTFEAAPPAP- 104
GP+ P G+ GS G+ P + +G P P P + D + P P
Sbjct: 855 GPQGPKGDRGSRGEKG-----DPGKDGVGQPGLPGPPGPPGPVVYVSEQDGSVLSVPGPE 909
Query: 105 -----APAPASSGQHHDFLSDLFSDDYGGKNCK-KPAEYGYVSLGRLGAA-KGAL-HPGC 156
A P +G + S G K K +P G LG A KGA PG
Sbjct: 910 GRPGFAGFPGPAGPKGNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPG- 968
Query: 157 FAPLHPPPPPPPPPAELKAEPGF-----EPADCKRKEEAGAPGG---GAGMAA-GFPYAL 207
PP P P K E GF P K E G PG G GM P
Sbjct: 969 ---FRGPPGPYGRPG-YKGEIGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGP 1024
Query: 208 RAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPPTACYAGAAPAP 256
G P S + SS PPG P P A P P
Sbjct: 1025 PGPPGPPGTPVYDSNVFAESSRPGPPGLPGNQGPPGPKGAKGEVGPPGP 1073
>gi|154146199 sal-like 3 [Homo sapiens]
Length = 1300
Score = 49.7 bits (117), Expect = 4e-06
Identities = 70/264 (26%), Positives = 84/264 (31%), Gaps = 62/264 (23%)
Query: 45 APAAPPAARPGPRPP-----------AGELGSIGDHERAIDFSPYLEPLGAPQAPAPATA 93
APA PP P P P A E G+ G A EP+ A A
Sbjct: 86 APAPPPEDFPEPSPASSPSERAESEAAEEAGAEGAEGEARPVEKEAEPMDAEPAG----- 140
Query: 94 TDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALH 153
DT PP APAP + + K G + G GA G
Sbjct: 141 -DTRAPRPPPAAPAPPTPAYGAPSTNVTLEALLSTKVAVAQFSQGARAAGGSGAGGGVA- 198
Query: 154 PGCFAPL------------------------------HPPPPPPPPPAELKAEPGFEPAD 183
PL PPP P PA + PG P+
Sbjct: 199 -AAAVPLILEQLMALQQQQIHQLQLIEQIRSQVALMQRPPPRPSLSPAAAPSAPGPAPSQ 257
Query: 184 CKRKE----EAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPA 239
AGAP A +A P A A+ G Q + SG+ S PG P+
Sbjct: 258 LPGLAALPLSAGAPA--AAIAGSGPAAPAAFEGAQPLSRPESGA-------STPGGPAEP 308
Query: 240 DAKAPPTACYAGAAPAPSQVKSKA 263
A A P+A A AAPAP+ A
Sbjct: 309 SAPAAPSAAPAPAAPAPAPAPQSA 332
Score = 45.1 bits (105), Expect = 1e-04
Identities = 38/107 (35%), Positives = 47/107 (43%), Gaps = 5/107 (4%)
Query: 9 PACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGK--AAPAAPPAARPGPRPPAGELGSI 66
PA P P P + +A A AAA G AAPAA A+P RP +G
Sbjct: 244 PAAAPSAPGPAPSQLPGLAALPLSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPG 303
Query: 67 GDHERAIDFSPYLEPLGAPQAPAPA---TATDTFEAAPPAPAPAPAS 110
G E + +P P A APAPA A+ ++A PA AP S
Sbjct: 304 GPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSASTPPALAPGS 350
Score = 38.5 bits (88), Expect = 0.009
Identities = 44/141 (31%), Positives = 48/141 (34%), Gaps = 28/141 (19%)
Query: 77 PYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAE 136
P L P AP AP PA + AA P A APA++ G PA
Sbjct: 240 PSLSPAAAPSAPGPAPSQLPGLAALPLSAGAPAAA--------------IAGSGPAAPAA 285
Query: 137 Y-GYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAELKAEPGFEPA---------DCKR 186
+ G L R GA PG P P P P A A P PA
Sbjct: 286 FEGAQPLSR--PESGASTPG--GPAEPSAPAAPSAAPAPAAPAPAPAPQSAASSQPQSAS 341
Query: 187 KEEAGAPGGGAGMAAGFPYAL 207
A APG G A G P L
Sbjct: 342 TPPALAPGSLLGAAPGLPSPL 362
Score = 29.3 bits (64), Expect = 5.4
Identities = 31/105 (29%), Positives = 39/105 (37%), Gaps = 24/105 (22%)
Query: 4 LVAWDPACLPLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAP--PAARPGPRPPAG 61
L A PA P A + E A + A+ GG A P+AP P+A P P PA
Sbjct: 266 LSAGAPAAAIAGSGPAAPAAFEGAQPLSRPESGASTPGGPAEPSAPAAPSAAPAPAAPA- 324
Query: 62 ELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAP 106
P APQ+ A + + PPA AP
Sbjct: 325 -------------------PAPAPQSAASSQPQSA--STPPALAP 348
>gi|14602433 Williams Beuren syndrome chromosome region 14 isoform
alpha [Homo sapiens]
Length = 852
Score = 49.3 bits (116), Expect = 5e-06
Identities = 87/351 (24%), Positives = 125/351 (35%), Gaps = 73/351 (20%)
Query: 15 PPPPPAFKSMEVANFYYEADCL------------AAAYGGKAAPAA-PPAAR----PGPR 57
P PPP F M + + L A APAA PP + P P
Sbjct: 409 PCPPPPFPPMAPPTALLQEEPLFSPRFPFPTVPPAPGVSPLPAPAAFPPTPQSVPSPAPT 468
Query: 58 PPAGELGSIGDHERAIDFSP-YLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHD 116
P EL +G E A F P + P G P AP+P + PA A P ++G ++
Sbjct: 469 PFPIELLPLGYSEPA--FGPCFSMPRGKPPAPSPRGQKASPPTLAPATASPPTTAGSNNP 526
Query: 117 FLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGAL--HPGCFAPLHPPPPPP-PPPAEL 173
L+ L + + +P L G+ + + P F P P P PP PPP
Sbjct: 527 CLTQLLT-AAKPEQALEPPLVSSTLLRSPGSPQETVPEFPCTFLPPTPAPTPPRPPPGPA 585
Query: 174 KAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSP- 232
P P + E P PSGS LS SS P
Sbjct: 586 TLAPS-RPLLVPKAERLSPP----------------------APSGSERRLSGDLSSMPG 622
Query: 233 PGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRER------------ 280
PGT S +PP P S+ + + KT ++ ++R
Sbjct: 623 PGTLSV--RVSPP-------QPILSRGRPDSNKTENRRITHISAEQKRRFNIKLGFDTLH 673
Query: 281 ---NNIAVRKSRDKAKMRNLE-TQHKVLELTAENERLQKKVEQLSRELSTL 327
+ ++ + S +K L+ T +L L E LQ++ +QL E+ L
Sbjct: 674 GLVSTLSAQPSLKVSKATTLQKTAEYILMLQQERAGLQEEAQQLRDEIEEL 724
Score = 30.0 bits (66), Expect = 3.2
Identities = 52/204 (25%), Positives = 72/204 (35%), Gaps = 33/204 (16%)
Query: 81 PLGAPQAPAPATATDT-FEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGY 139
P P+ P+ + D+ F + P PASS H LS S +C P +
Sbjct: 314 PSNFPEPPSFSPVVDSLFSSGTLGPEVPPASSAMTH--LSG-HSRLQARNSCPGPLDSSA 370
Query: 140 VSLGRLGAAKGALHPGCFAPLHPPPPPP------PPPAELKAEPGFEPADCKRKEEAGAP 193
+ L P P PPPP P PPPA++ PG EP P
Sbjct: 371 F------LSSDFLLPEDPKPRLPPPPVPPPLLHYPPPAKV---PGLEPCPPPPFPPMAPP 421
Query: 194 GG----GAGMAAGFPY-ALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD-------- 240
+ FP+ + G +P+ ++ + S SP TP P +
Sbjct: 422 TALLQEEPLFSPRFPFPTVPPAPGVSPLPAPAAFPPTPQSVPSPAPTPFPIELLPLGYSE 481
Query: 241 -AKAPPTACYAGAAPAPSQVKSKA 263
A P + G PAPS KA
Sbjct: 482 PAFGPCFSMPRGKPPAPSPRGQKA 505
>gi|14249534 hypothetical protein LOC84915 [Homo sapiens]
Length = 452
Score = 49.3 bits (116), Expect = 5e-06
Identities = 55/183 (30%), Positives = 66/183 (36%), Gaps = 26/183 (14%)
Query: 99 AAPPA------PAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGAL 152
AAPPA P P+PA G F S +S G +C+K E G + L A GA
Sbjct: 215 AAPPACQGMAIPHPSPAKHGPVPSFPSMAYSAAAGLPDCRKGTELGQGATQALTLA-GAA 273
Query: 153 HPGCFAP------LHPPPPPPPPPAELKAEPGF-----EPADCKRKEEAGAPGGGAGMAA 201
P +A L P PPPPPP L+A G P C + A G
Sbjct: 274 KPAGYADSGLDYLLWPQKPPPPPPQPLRAYSGSTVASKSPEACGGRAYERASGSPLNCGV 333
Query: 202 GFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGT-------PSPADAKAPPTACYAGAAP 254
G P + Y A P S TS +P P A A P A P
Sbjct: 334 GLPTSFTVG-QYFAAPWNSVLVTPTSDYYNPAAAVVVTELGPGAARELAGPPADALSGLP 392
Query: 255 APS 257
+ S
Sbjct: 393 SKS 395
>gi|14602437 Williams Beuren syndrome chromosome region 14 isoform
gamma [Homo sapiens]
Length = 850
Score = 48.9 bits (115), Expect = 7e-06
Identities = 84/342 (24%), Positives = 124/342 (36%), Gaps = 57/342 (16%)
Query: 15 PPPPPAFKSMEVANFYYEADCL------------AAAYGGKAAPAA-PPAAR----PGPR 57
P PPP F M + + L A APAA PP + P P
Sbjct: 409 PCPPPPFPPMAPPTALLQEEPLFSPRFPFPTVPPAPGVSPLPAPAAFPPTPQSVPSPAPT 468
Query: 58 PPAGELGSIGDHERAIDFSP-YLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHD 116
P EL +G E A F P + P G P AP+P + PA A P ++G ++
Sbjct: 469 PFPIELLPLGYSEPA--FGPCFSMPRGKPPAPSPRGQKASPPTLAPATASPPTTAGSNNP 526
Query: 117 FLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGAL--HPGCFAPLHPPPPPP-PPPAEL 173
L+ L + + +P L G+ + + P F P P P PP PPP
Sbjct: 527 CLTQLLT-AAKPEQALEPPLVSSTLLRSPGSPQETVPEFPCTFLPPTPAPTPPRPPPGPA 585
Query: 174 KAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSP- 232
P P + E P PSGS LS SS P
Sbjct: 586 TLAPS-RPLLVPKAERLSPP----------------------APSGSERRLSGDLSSMPG 622
Query: 233 PGTPSPADAKAPPTACYAGAAPAPSQ------VKSKAKKTVDKHSDEYKIRRERNNIAVR 286
PGT S +PP + P ++ + ++ K+ + + + ++ +
Sbjct: 623 PGTLSV--RVSPPQPILSRGRPDSNKNRRITHISAEQKRRFNIKLGFDTLHGLVSTLSAQ 680
Query: 287 KSRDKAKMRNLE-TQHKVLELTAENERLQKKVEQLSRELSTL 327
S +K L+ T +L L E LQ++ +QL E+ L
Sbjct: 681 PSLKVSKATTLQKTAEYILMLQQERAGLQEEAQQLRDEIEEL 722
Score = 30.0 bits (66), Expect = 3.2
Identities = 52/204 (25%), Positives = 72/204 (35%), Gaps = 33/204 (16%)
Query: 81 PLGAPQAPAPATATDT-FEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGY 139
P P+ P+ + D+ F + P PASS H LS S +C P +
Sbjct: 314 PSNFPEPPSFSPVVDSLFSSGTLGPEVPPASSAMTH--LSG-HSRLQARNSCPGPLDSSA 370
Query: 140 VSLGRLGAAKGALHPGCFAPLHPPPPPP------PPPAELKAEPGFEPADCKRKEEAGAP 193
+ L P P PPPP P PPPA++ PG EP P
Sbjct: 371 F------LSSDFLLPEDPKPRLPPPPVPPPLLHYPPPAKV---PGLEPCPPPPFPPMAPP 421
Query: 194 GG----GAGMAAGFPY-ALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD-------- 240
+ FP+ + G +P+ ++ + S SP TP P +
Sbjct: 422 TALLQEEPLFSPRFPFPTVPPAPGVSPLPAPAAFPPTPQSVPSPAPTPFPIELLPLGYSE 481
Query: 241 -AKAPPTACYAGAAPAPSQVKSKA 263
A P + G PAPS KA
Sbjct: 482 PAFGPCFSMPRGKPPAPSPRGQKA 505
>gi|118766337 zinc finger protein of the cerebellum 5 [Homo sapiens]
Length = 663
Score = 48.9 bits (115), Expect = 7e-06
Identities = 61/235 (25%), Positives = 73/235 (31%), Gaps = 39/235 (16%)
Query: 15 PPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHERAID 74
P PPP A + A A G PA PA P P G + R
Sbjct: 231 PAPPP-----HSAGMFISASGTYAGPDGSGGPALFPALHDTPGAPGGHPHPLNGQMR--- 282
Query: 75 FSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKP 134
LG A A A A A PP AP S H+ ++ + G
Sbjct: 283 -------LGLAAAAAAAAAELYGRAEPPF---APRSGDAHYGAVAAAAAAALHG------ 326
Query: 135 AEYGYVSLG---RLGAAKGALHPGCFAPLHPPPP-PPPPPAELKAEPGFEPADCKRKEEA 190
YG V+L AA A PG H PPP PPPPPA PA +
Sbjct: 327 --YGAVNLNLNLAAAAAAAAAGPGPHLQHHAPPPAPPPPPA---------PAQHPHQHHP 375
Query: 191 GAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP 245
PG ++ L + + L PP P P A P
Sbjct: 376 HLPGAAGAFLRYMRQPIKQELICKWIDPDELAGLPPPPPPPPPPPPPPPAGGAKP 430
Score = 41.2 bits (95), Expect = 0.001
Identities = 59/248 (23%), Positives = 78/248 (31%), Gaps = 48/248 (19%)
Query: 32 EADCLAAAYGGKAAPAAPPAARPGPR-------PPAGELGSIGDHERAIDFSPYLEPLGA 84
+A L + +A PA P A R P AG G A +P A
Sbjct: 98 QASTLGLSPPSQAFPAHPEAPAAAARAAALVAHPGAGSYPCGGGSSGA-------QP-SA 149
Query: 85 PQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGR 144
P PAP PP P P PA SG ++ GG + K +V
Sbjct: 150 PPPPAPPLPPTPSPPPPPPPPPPPALSGY-------TTTNSGGGGSSGKGHSRDFVLRRD 202
Query: 145 LGAAK-----------GALHPGCFAPLHPPPPPPPPPAELKAEPGFEPADCKR------- 186
L A G G +P HP PPP + A + D
Sbjct: 203 LSATAPAAAMHGAPLGGEQRSGTGSPQHPAPPPHSAGMFISASGTYAGPDGSGGPALFPA 262
Query: 187 -KEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP 245
+ GAPGG P+ L + + ++ + + PP P DA
Sbjct: 263 LHDTPGAPGG-------HPHPLNGQMRLGLAAAAAAAAAELYGRAEPPFAPRSGDAHYGA 315
Query: 246 TACYAGAA 253
A A AA
Sbjct: 316 VAAAAAAA 323
Score = 38.5 bits (88), Expect = 0.009
Identities = 62/266 (23%), Positives = 86/266 (32%), Gaps = 53/266 (19%)
Query: 7 WDPACLPLPPPP------PAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPA 60
+ P C+ L PP PA + ++A + G A A PPA
Sbjct: 17 YGPDCVVLMEPPLSKRNPPALRLADLATAQVQP---LQNMTGFPALAGPPAH-------- 65
Query: 61 GELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPA-----PAPASSGQHH 115
+L + H R D P P T +PP+ A APA++ +
Sbjct: 66 SQLRAAVAHLRLRDLGADPGVATTPLGPEHMAQASTLGLSPPSQAFPAHPEAPAAAARAA 125
Query: 116 DFLSDLFSDDY---GGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAE 172
++ + Y GG + +P+ A P P PPPPPPPPP
Sbjct: 126 ALVAHPGAGSYPCGGGSSGAQPS-----------APPPPAPPLPPTPSPPPPPPPPPPPA 174
Query: 173 LKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQA-------VPSGSSGSLS 225
L G+ + GG +G + LR L A P G
Sbjct: 175 LS---GYTTTN-------SGGGGSSGKGHSRDFVLRRDLSATAPAAAMHGAPLGGEQRSG 224
Query: 226 TSSSSSPPGTPSPADAKAPPTACYAG 251
T S P P A + YAG
Sbjct: 225 TGSPQHPAPPPHSAGMFISASGTYAG 250
>gi|120587025 SH3 and multiple ankyrin repeat domains 1 [Homo sapiens]
Length = 2161
Score = 48.9 bits (115), Expect = 7e-06
Identities = 68/282 (24%), Positives = 99/282 (35%), Gaps = 34/282 (12%)
Query: 13 PLPPP-----PPAFKSMEVANFYYEADCLAAAYGGKAAPA-------------APPAARP 54
P+PPP PP S + Y+++ G AAP AP A +P
Sbjct: 1604 PVPPPAVAAAPPTLDSTASSLTSYDSEVATLTQGASAAPGDPHPPGPPAPAAPAPAAPQP 1663
Query: 55 GPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQH 114
GP PP G I + + LE + + + +A A A A +SG
Sbjct: 1664 GPDPPPGTDSGIEEVDSRSSSDHPLETISSASTLSSLSAEGGGSAGGGGGAGAGVASGPE 1723
Query: 115 --HDFLSDLFSDDYGGKNCKKPAEYGYVSL-----GRLGAAKGALHPGCFAPLHPPPPPP 167
+++ L +GG + P + GR A G L PG L P P
Sbjct: 1724 LLDTYVAYLDGQAFGGSSTPGPPYPPQLMTPSKLRGRALGASGGLRPGPSGGLRDPVTPT 1783
Query: 168 PPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSS---GSL 224
P + G + R +G P G AG P A+ + +P+ SS L
Sbjct: 1784 SPTVSVTG-AGTDGLLALR-ACSGPPTAG---VAGGPVAVEPEVPPVPLPTASSLPRKLL 1838
Query: 225 STSSSSSPPGTPSPADAKAPPTACYAGA-APAPSQVKSKAKK 265
PP P P P + A A S++ SK ++
Sbjct: 1839 PWEEGPGPPPPPLPGPLAQPQASALATVKASIISELSSKLQQ 1880
Score = 47.4 bits (111), Expect = 2e-05
Identities = 57/205 (27%), Positives = 70/205 (34%), Gaps = 48/205 (23%)
Query: 81 PLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYV 140
P P PAPAT PPA A AP + S L S D +E +
Sbjct: 1589 PHPLPDTPAPATPLPP--VPPPAVAAAPPTL---DSTASSLTSYD---------SEVATL 1634
Query: 141 SLGRLGAAKGALH------PGCFAPLHPPPPPPPPPAELKAEPGFEPADCKRK------- 187
+ G AA G H P AP P P P PPP + G E D +
Sbjct: 1635 TQG-ASAAPGDPHPPGPPAPAAPAPAAPQPGPDPPPG---TDSGIEEVDSRSSSDHPLET 1690
Query: 188 ------------EEAGAPGGGAGMAAGF---PYALRAYLGYQAVPSGSSGSLSTSSSSSP 232
E G+ GGG G AG P L Y+ Y + + G ST P
Sbjct: 1691 ISSASTLSSLSAEGGGSAGGGGGAGAGVASGPELLDTYVAY--LDGQAFGGSSTPGPPYP 1748
Query: 233 PGTPSPADAKAPPTACYAGAAPAPS 257
P +P+ + G P PS
Sbjct: 1749 PQLMTPSKLRGRALGASGGLRPGPS 1773
Score = 37.0 bits (84), Expect = 0.026
Identities = 64/225 (28%), Positives = 84/225 (37%), Gaps = 33/225 (14%)
Query: 39 AYGGKAAPAAPPAARPGPRP-----------PAGELG-SIGDHERAIDFSPYLEPLGAPQ 86
AYGG +A + P PRP PA LG ++ ERA+ S E GAPQ
Sbjct: 1319 AYGGGGGSSAFTSFLP-PRPLVHPLTGKALDPASPLGLALAARERALKESS--EGGGAPQ 1375
Query: 87 APAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPA--EYGY-VSLG 143
P P + +EA P P P S HH+ + L+ G + PA E GY LG
Sbjct: 1376 PP-PRPPSPRYEA--PPPTPHHHSPHAHHEPVLRLW-----GASPPDPARRELGYRAGLG 1427
Query: 144 RLGAAKGALHPGC-FAPLHPPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAG 202
+ A P + LH PP P L + G EP G A
Sbjct: 1428 SQEKSLPASPPAARRSLLHRLPPTAPGVGPLLLQLGTEPP----APHPGVSKPWRSAAPE 1483
Query: 203 FPYALRAYLGY--QAVPSGSSGSLSTSSSSSPPGTPSPADAKAPP 245
P L ++ + P S S PG P P+ ++ P
Sbjct: 1484 EPERLPLHVRFLENCQPRAPVTSGRGPPSEDGPGVPPPSPRRSVP 1528
Score = 33.5 bits (75), Expect = 0.29
Identities = 64/279 (22%), Positives = 82/279 (29%), Gaps = 90/279 (32%)
Query: 42 GKAAPAAPPAARPGPRPPAGELGSIGD------------------------------HER 71
G PA+ PA+ GP PP +GS H
Sbjct: 959 GGPLPASSPASFDGPSPPDTRVGSREKSLYHSGPLPPAHHHPPHHHHHHAPPPQPHHHHA 1018
Query: 72 AIDFSPYLEPLGAPQAPAPATATDT------FEAAPPAPAPAPASSGQHHDFLSDLFSDD 125
P +E G+P P P A + P+P P A S HH S
Sbjct: 1019 HPPHPPEMETGGSPDDPPPRLALGPQPSLRGWRGGGPSPTPG-APSPSHHG------SAG 1071
Query: 126 YGGKNCKKPAEYGYVSL-----------------GRLGAA-----------KGALHPGCF 157
GG + + PA Y L GR G KG P
Sbjct: 1072 GGGGSSQGPA-LRYFQLPPRAASAAMYVPARSGRGRKGPLVKQTKVEGEPQKGGGLPPAP 1130
Query: 158 APLHPPPPPPPPPAELKAEPGFEPAD-----CKRKEEAGAPGGGAGMAAGFPYALRAYLG 212
+P P P PPP +E P +G G+ A P
Sbjct: 1131 SPTSPASPQPPPAVAAPSEKNSIPIPTIIIKAPSTSSSGRSSQGSSTEAEPPT------- 1183
Query: 213 YQAVPSGSSGSLSTSSSSSP-----PGTPSPADAKAPPT 246
Q P+G G +S S +P P +PSP A P+
Sbjct: 1184 -QPEPTGGGGGGGSSPSPAPAMSPVPPSPSPVPTPASPS 1221
Score = 31.2 bits (69), Expect = 1.4
Identities = 38/149 (25%), Positives = 47/149 (31%), Gaps = 34/149 (22%)
Query: 162 PPPPPPPPPAELKAEPGFEPADCKRK------------------------EEAGAPGGGA 197
P PPPPP P L A K G+ GGG
Sbjct: 1844 PGPPPPPLPGPLAQPQASALATVKASIISELSSKLQQFGGSSAAGGALPWARGGSGGGGD 1903
Query: 198 GMAAGFPYALR--AYLGYQAVPSGSSGSLSTSSSSS-------PPGTPSPADAKAPPTAC 248
G Y + L Q + S SL + SS PP P P PTA
Sbjct: 1904 SHHGGASYVPERTSSLQRQRLSDDSQSSLLSKPVSSLFQNWPKPPLPPLPTGTGVSPTAA 1963
Query: 249 YAGAAPAPSQVKSKAKKTVDKHSDEYKIR 277
A A +PS S + T E+++R
Sbjct: 1964 AAPGATSPS-ASSSSTSTRHLQGVEFEMR 1991
Score = 30.4 bits (67), Expect = 2.4
Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 162 PPPPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSS 221
P PPP PP +A P P A A P R LGY+A
Sbjct: 1374 PQPPPRPPSPRYEAPP---PTPHHHSPHAHHEPVLRLWGASPPDPARRELGYRA----GL 1426
Query: 222 GSLSTSSSSSPPGTPSPADAKAPPTA 247
GS S +SPP + PPTA
Sbjct: 1427 GSQEKSLPASPPAARRSLLHRLPPTA 1452
>gi|14602435 Williams Beuren syndrome chromosome region 14 isoform
beta [Homo sapiens]
Length = 833
Score = 48.5 bits (114), Expect = 9e-06
Identities = 87/347 (25%), Positives = 128/347 (36%), Gaps = 64/347 (18%)
Query: 15 PPPPPAFKSMEVANFYYEADCL------------AAAYGGKAAPAA-PPAAR----PGPR 57
P PPP F M + + L A APAA PP + P P
Sbjct: 409 PCPPPPFPPMAPPTALLQEEPLFSPRFPFPTVPPAPGVSPLPAPAAFPPTPQSVPSPAPT 468
Query: 58 PPAGELGSIGDHERAIDFSP-YLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHD 116
P EL +G E A F P + P G P AP+P + PA A P ++G ++
Sbjct: 469 PFPIELLPLGYSEPA--FGPCFSMPRGKPPAPSPRGQKASPPTLAPATASPPTTAGSNNP 526
Query: 117 FLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGAL--HPGCFAPLHPPPPPP-PPPAEL 173
L+ L + + +P L G+ + + P F P P P PP PPP
Sbjct: 527 CLTQLLT-AAKPEQALEPPLVSSTLLRSPGSPQETVPEFPCTFLPPTPAPTPPRPPPGPA 585
Query: 174 KAEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSP- 232
P P + E P PSGS LS SS P
Sbjct: 586 TLAPS-RPLLVPKAERLSPP----------------------APSGSERRLSGDLSSMPG 622
Query: 233 PGTPSPADAKAPPTACYAGAAPAPSQVKSKAKKTVDKHSDEYKIRRERN-NIAVRKSRDK 291
PGT S +PP P S+ + + KT ++ ++R NI +
Sbjct: 623 PGTLSV--RVSPP-------QPILSRGRPDSNKTENRRITHISAEQKRRFNIKLGFDTLH 673
Query: 292 AKMRNLETQHKVLE---LTAENERLQKKVEQLSRELSTLRNLFKQLP 335
+ L Q + E L E ++L+ ++E+L+ ++ + +QLP
Sbjct: 674 GLVSTLSAQPSLKERAGLQEEAQQLRDEIEELNAAINLCQ---QQLP 717
Score = 30.0 bits (66), Expect = 3.2
Identities = 52/204 (25%), Positives = 72/204 (35%), Gaps = 33/204 (16%)
Query: 81 PLGAPQAPAPATATDT-FEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGY 139
P P+ P+ + D+ F + P PASS H LS S +C P +
Sbjct: 314 PSNFPEPPSFSPVVDSLFSSGTLGPEVPPASSAMTH--LSG-HSRLQARNSCPGPLDSSA 370
Query: 140 VSLGRLGAAKGALHPGCFAPLHPPPPPP------PPPAELKAEPGFEPADCKRKEEAGAP 193
+ L P P PPPP P PPPA++ PG EP P
Sbjct: 371 F------LSSDFLLPEDPKPRLPPPPVPPPLLHYPPPAKV---PGLEPCPPPPFPPMAPP 421
Query: 194 GG----GAGMAAGFPY-ALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPAD-------- 240
+ FP+ + G +P+ ++ + S SP TP P +
Sbjct: 422 TALLQEEPLFSPRFPFPTVPPAPGVSPLPAPAAFPPTPQSVPSPAPTPFPIELLPLGYSE 481
Query: 241 -AKAPPTACYAGAAPAPSQVKSKA 263
A P + G PAPS KA
Sbjct: 482 PAFGPCFSMPRGKPPAPSPRGQKA 505
>gi|60460889 Myb protein P42POP [Homo sapiens]
Length = 399
Score = 48.5 bits (114), Expect = 9e-06
Identities = 53/193 (27%), Positives = 66/193 (34%), Gaps = 26/193 (13%)
Query: 9 PACLPLPPPPPA-----FKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPG-------- 55
PA PPPP+ + E AD A + G ++P P ARP
Sbjct: 137 PAAPSSQPPPPSACPQRYVLSEDRREDRRADTSAHSKAGSSSPE--PWARPSCTPQEGGC 194
Query: 56 PRP------PAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPA 109
PRP P L + A+ P PL P A + PP P P +
Sbjct: 195 PRPKERESPPPSALQPVQLPRLALSPPPPAPPLPPPPPLAQVAPSPPSPPPPPRPPPTLS 254
Query: 110 SSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFA-----PLHPPP 164
+S DFL + G L +A L PG PL PPP
Sbjct: 255 ASDPSLDFLRAQQETANAIRELAGTLRQGLAKLSEALSALLPLLPGTPVDSLPPPLPPPP 314
Query: 165 PPPPPPAELKAEP 177
PPPPPP + P
Sbjct: 315 PPPPPPRPVLPPP 327
>gi|51468067 Sp5 transcription factor [Homo sapiens]
Length = 398
Score = 48.5 bits (114), Expect = 9e-06
Identities = 51/173 (29%), Positives = 62/173 (35%), Gaps = 39/173 (22%)
Query: 46 PAAPPAARPGPRPPAGELGSIGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPA 105
PA P A P P P G L H + + + PL P P+ + P + A
Sbjct: 78 PAHSPGALPPPHPSLG-LTPQKTHLQPSFGAAHELPLTPPADPSYPYEFSPVKMLPSSMA 136
Query: 106 PAPASSGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPP 165
PAS PA Y AA+ AL PG L PPPP
Sbjct: 137 ALPASCA---------------------PAYVPY-------AAQAALPPGYSNLLPPPPP 168
Query: 166 PPPPPAELKAEPGFEPADC---------KRKEEAGAPGGG-AGMAAGFPYALR 208
PPPPP + P P D +G PG G +G AG P+A R
Sbjct: 169 PPPPPTCRQLSPNPAPDDLPWWSIPQAGAGPGASGVPGSGLSGACAGAPHAPR 221
>gi|4885407 hyperpolarization activated cyclic nucleotide-gated
potassium channel 4 [Homo sapiens]
Length = 1203
Score = 48.1 bits (113), Expect = 1e-05
Identities = 67/246 (27%), Positives = 85/246 (34%), Gaps = 40/246 (16%)
Query: 16 PPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPG-PRPPAG----ELGSIGDHE 70
P +F ++A F A ++P P P P AG + G
Sbjct: 852 PSSSSFHIQQLAGFSAPAGLSPLLPSSSSSPPPGACGSPSAPTPSAGVAATTIAGFGHFH 911
Query: 71 RAI------DFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSD 124
+A+ SP L PL P A +P +AA P+PAP A G L + F
Sbjct: 912 KALGGSLSSSDSPLLTPL-QPGARSP-------QAAQPSPAPPGARGGLG---LPEHFLP 960
Query: 125 DYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFA-----PLHPPPPPPPPPAELKAEPGF 179
+ + P+ S G+LG G L G P PP P PP A G
Sbjct: 961 P--PPSSRSPSS----SPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGASGGA 1014
Query: 180 EPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPA 239
P + PG G FP A SGS GSL +SSPP P
Sbjct: 1015 SPVGFTPRGGLSPPGHSPGPPRTFPSA-------PPRASGSHGSLLLPPASSPPPPQVPQ 1067
Query: 240 DAKAPP 245
PP
Sbjct: 1068 RRGTPP 1073
Score = 37.4 bits (85), Expect = 0.020
Identities = 67/282 (23%), Positives = 90/282 (31%), Gaps = 50/282 (17%)
Query: 15 PPPPPAFKSMEVANFYYEADCLAAAYGGKAAPA---------APPAARPGPRPPAGELGS 65
P P + +A F + L + +P +P AA+P P PP G G
Sbjct: 893 PTPSAGVAATTIAGFGHFHKALGGSLSSSDSPLLTPLQPGARSPQAAQPSPAPP-GARGG 951
Query: 66 IGDHERAI-----DFSPYLEP--LGAPQ-------APAPATATDTFEAAPPAPA-PAPAS 110
+G E + SP P LG P A P + +T P P+ A AS
Sbjct: 952 LGLPEHFLPPPPSSRSPSSSPGQLGQPPGELSLGLATGPLSTPETPPRQPEPPSLVAGAS 1011
Query: 111 SGQHHDFLSDLFSDDYGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPP----- 165
G + G + P + G+ L P +P P P
Sbjct: 1012 GGASPVGFTPRGGLSPPGHSPGPPRTFPSAPPRASGSHGSLLLPPASSPPPPQVPQRRGT 1071
Query: 166 PPPPPAELK--------AEPGFEPADCKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVP 217
PP P L ++P + A G MAA FP RA
Sbjct: 1072 PPLTPGRLTQDLKLISASQPALPQDGAQTLRRASPHSSGESMAA-FPLFPRA-------- 1122
Query: 218 SGSSGSLSTSSSSSPPGTP---SPADAKAPPTACYAGAAPAP 256
G SG +S PPG P P P +G+ P P
Sbjct: 1123 GGGSGGSGSSGGLGPPGRPYGAIPGQHVTLPRKTSSGSLPPP 1164
Score = 32.7 bits (73), Expect = 0.49
Identities = 53/256 (20%), Positives = 77/256 (30%), Gaps = 45/256 (17%)
Query: 9 PACLPLPPPPPAFKSM---EVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGS 65
PA + PPP ++ + L + G A+PA+ P+ P + +
Sbjct: 802 PAAIFRPPPGSGLGNLGAGQTPRHLKRLQSLIPSALGSASPASSPSQVDTPSSSSFHIQQ 861
Query: 66 IGDHERAIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDD 125
+ SP L + +P P P A A +G H F
Sbjct: 862 LAGFSAPAGLSPLLP--SSSSSPPPGACGSPSAPTPSAGVAATTIAGFGH------FHKA 913
Query: 126 YGGKNCKKPAEYGYVSLGRLGAAKGALHPGCFAPLHPPPPPPPPPAE--LKAEPGFEPAD 183
GG + L PG +P P P PP A L F P
Sbjct: 914 LGGSLSSSDSPL-----------LTPLQPGARSPQAAQPSPAPPGARGGLGLPEHFLPPP 962
Query: 184 CKRKEEAGAPGGGAGMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPSPADAKA 243
+ + +PG G P G LS ++ P TP +
Sbjct: 963 PSSRSPSSSPG-----QLGQP----------------PGELSLGLATGPLSTPETPPRQP 1001
Query: 244 PPTACYAGAAPAPSQV 259
P + AGA+ S V
Sbjct: 1002 EPPSLVAGASGGASPV 1017
Score = 30.0 bits (66), Expect = 3.2
Identities = 50/189 (26%), Positives = 63/189 (33%), Gaps = 49/189 (25%)
Query: 13 PLPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAA-RPGPRPPAGELGSIGDHER 71
PLP P P+ AAA G ++ +A AA GP AG+ + GD R
Sbjct: 52 PLPSPSPS----------------AAAGGTESRSSALGAADSEGPARGAGKSSTNGDCRR 95
Query: 72 AIDFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSD----LFSDDYG 127
F L LG+ + T + + S G HD + D
Sbjct: 96 ---FRGSLASLGSRGGGSGGTGSGS-------------SHGHLHDSAEERRLIAEGDASP 139
Query: 128 GKNCKKPAEYGYVSLGRLGAAKGALHPGCFA-PLHPPPPPPPPPAELKAEPGFEPADCKR 186
G++ P G A PG A P PPPP PP A D
Sbjct: 140 GEDRTPP-----------GLAAEPERPGASAQPAASPPPPQQPPQPASASCEQPSVDTAI 188
Query: 187 KEEAGAPGG 195
K E GA G
Sbjct: 189 KVEGGAAAG 197
>gi|58530845 zyxin [Homo sapiens]
Length = 572
Score = 48.1 bits (113), Expect = 1e-05
Identities = 64/277 (23%), Positives = 81/277 (29%), Gaps = 50/277 (18%)
Query: 14 LPPPPPAFKSMEVANFYYEADCLAAAYGGKAAPAAPPAARPGPRPPAGELGSIGDHERAI 73
+PPPPP + + D A GG P PP P P E E
Sbjct: 63 IPPPPPEDFPLPPPPLAGDGDDAEGALGGAFPPPPPPIEESFPPAPLEE-------EIFP 115
Query: 74 DFSPYLEPLGAPQAPAPATATDTFEAAPPAPAPAPASSGQHHDFLSDLFSDDYGGKNCKK 133
P E G P+AP P PP P +S D LS L D K
Sbjct: 116 SPPPPPEEEGGPEAPIPP---------PPQPREKVSSIDLEIDSLSSLLDDMTKNDPFKA 166
Query: 134 PAEYGYVS--LGRLGAAKGALHP--GCFAPLHP--------------------------P 163
GYV + ++K + P G APL P P
Sbjct: 167 RVSSGYVPPPVATPFSSKSSTKPAAGGTAPLPPWKSPSSSQPLPQVPAPAQSQTQFHVQP 226
Query: 164 PPPPPPPAELKAEPGFEPADCKRKEEAGAPGGGAGMAAGF----PYALRAYLGYQAVPSG 219
P P P +L + +P + G P A F P + G
Sbjct: 227 QPQPKPQVQLHVQSQTQPVSLANTQPRGPPASSPAPAPKFSPVTPKFTPVASKFSPGAPG 286
Query: 220 SSGSLSTSSSSSPPGTPSPADAKAPPTACYAGAAPAP 256
SGS P + + PP+ YA P
Sbjct: 287 GSGSQPNQKLGHPEALSAGTGSPQPPSFTYAQQREKP 323
Score = 32.3 bits (72), Expect = 0.64
Identities = 38/145 (26%), Positives = 53/145 (36%), Gaps = 38/145 (26%)
Query: 148 AKGALHPGCFAPLHPPPPPPP-----PPAELKAEPGFEPADCKRKEEAGAPGGGA----- 197
A+GAL G F PPPPPP PPA L+ E P+ EE G P
Sbjct: 85 AEGALG-GAF-----PPPPPPIEESFPPAPLEEE--IFPSPPPPPEEEGGPEAPIPPPPQ 136
Query: 198 --------------------GMAAGFPYALRAYLGYQAVPSGSSGSLSTSSSSSPPGTPS 237
M P+ R GY P + S +S+ + GT
Sbjct: 137 PREKVSSIDLEIDSLSSLLDDMTKNDPFKARVSSGYVPPPVATPFSSKSSTKPAAGGTAP 196
Query: 238 PADAKAPPTACYAGAAPAPSQVKSK 262
K+P ++ PAP+Q +++
Sbjct: 197 LPPWKSPSSSQPLPQVPAPAQSQTQ 221
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,187,895
Number of Sequences: 37866
Number of extensions: 1459635
Number of successful extensions: 29493
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 1383
Number of HSP's that attempted gapping in prelim test: 13455
Number of HSP's gapped (non-prelim): 10649
length of query: 345
length of database: 18,247,518
effective HSP length: 103
effective length of query: 242
effective length of database: 14,347,320
effective search space: 3472051440
effective search space used: 3472051440
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.