Guide to the Human Genome
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Name: SP5 Sequence: fasta or formatted (398aa) NCBI GI: 51468067
Description:

Sp5 transcription factor

Referenced in:

Kruppel-related Zinc Finger Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            15.8         63          10
 C cysteine            3.5         14           1
 D aspartate           3.5         14           2
 E glutamate           2.5         10           1
 F phenylalanine       3.0         12           1
 G glycine             7.3         29           2
 H histidine           4.3         17           1
 I isoleucine          0.8          3           1
 K lysine              4.8         19           3
 L leucine             9.5         38           2
 M methionine          1.3          5           1
 N asparagine          1.5          6           1
 P proline            14.6         58          10
 Q glutamine           4.5         18           1
 R arginine            5.5         22           2
 S serine              7.0         28           2
 T threonine           3.8         15           1
 V valine              3.5         14           1
 W tryptophan          1.3          5           2
 Y tyrosine            2.0          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Sp5 transcription factor 
SP4                   0.235   Sp4 transcription factor 
SP3                   0.224   Sp3 transcription factor isoform 2 
SP3                   0.224   Sp3 transcription factor isoform 1 
SP1                   0.222   Sp1 transcription factor isoform a 
SP1                   0.222   Sp1 transcription factor isoform b 
SP9                   0.215   Sp9 transcription factor homolog 
SP6                   0.211   Sp6 transcription factor 
SP8                   0.209   Sp8 transcription factor isoform 1 
SP8                   0.209   Sp8 transcription factor isoform 2 
SP7                   0.198   osterix 
SP2                   0.176   Sp2 transcription factor 
KLF2                  0.153   Kruppel-like factor 
KLF14                 0.149   Kruppel-like factor 14 
KLF11                 0.149   Kruppel-like factor 11 
KLF16                 0.148   BTE-binding protein 4 
KLF13                 0.146   Kruppel-like factor 13 
KLF10                 0.141   Kruppel-like factor 10 isoform b 
KLF10                 0.141   Kruppel-like factor 10 isoform a 
KLF9                  0.138   Kruppel-like factor 9 
KLF1                  0.135   Kruppel-like factor 1 (erythroid) 
KLF15                 0.124   Kruppel-like factor 15 
KLF5                  0.118   Kruppel-like factor 5 
KLF4                  0.118   Kruppel-like factor 4 (gut) 
KLF6                  0.113   Kruppel-like factor 6 isoform A 
EGR2                  0.111   early growth response 2 protein isoform b 
EGR2                  0.111   early growth response 2 protein isoform a 
EGR2                  0.111   early growth response 2 protein isoform a 
EGR2                  0.111   early growth response 2 protein isoform a 
KLF7                  0.110   Kruppel-like factor 7 (ubiquitous) 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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