SETX 1362

Name: SETX	Sequence: fasta or formatted (2677aa)		NCBI GI: 113722133
Description: senataxin		Referenced in: RNases and RNA Stability
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.4 117 2 C cysteine 2.8 76 2 D aspartate 6.2 165 5 E glutamate 7.5 202 3 F phenylalanine 3.1 84 2 G glycine 4.3 114 3 H histidine 2.4 64 2 I isoleucine 5.2 140 3 K lysine 8.3 221 2 L leucine 9.3 249 3 M methionine 1.9 50 2 N asparagine 5.0 135 2 P proline 5.3 142 3 Q glutamine 5.1 137 2 R arginine 5.2 138 3 S serine 9.4 251 3 T threonine 5.5 148 3 V valine 6.0 161 2 W tryptophan 0.7 20 1 Y tyrosine 2.4 63 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 senataxin UPF1 0.028 regulator of nonsense transcripts 1 IGHMBP2 0.023 immunoglobulin mu binding protein 2 PRIC285 0.016 PPAR-alpha interacting complex protein 285 isoform ... PRIC285 0.016 PPAR-alpha interacting complex protein 285 isoform ... DNA2 0.014 DNA replication helicase 2 homolog MOV10L1 0.014 MOV10-like 1 MOV10 0.012 Mov10, Moloney leukemia virus 10, homolog MOV10 0.012 Mov10, Moloney leukemia virus 10, homolog ZNFX1 0.012 zinc finger, NFX1-type containing 1 AQR 0.011 aquarius HELZ 0.008 helicase with zinc finger domain ATRX 0.004 transcriptional regulator ATRX isoform 2 ATRX 0.004 transcriptional regulator ATRX isoform 1 RSF1 0.004 remodeling and spacing factor 1 NIPBL 0.004 delangin isoform B NIPBL 0.004 delangin isoform A NPAT 0.004 nuclear protein, ataxia-telangiectasia locus [Homo... BOD1L 0.004 biorientation of chromosomes in cell division 1-like... CNTLN 0.004 centlein isoform 1 MAP1B 0.003 microtubule-associated protein 1B MLL3 0.003 myeloid/lymphoid or mixed-lineage leukemia 3 GOLGA4 0.003 golgi autoantigen, golgin subfamily a, 4 TRDN 0.003 triadin DMP1 0.003 dentin matrix acidic phosphoprotein 1 isoform 1 precu... DMP1 0.003 dentin matrix acidic phosphoprotein 1 isoform 2 pre... SETD1A 0.003 SET domain containing 1A DPCR1 0.003 diffuse panbronchiolitis critical region 1 protein ... CLIP1 0.003 restin isoform b CLIP1 0.003 restin isoform a Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.