SSX5 24807

Name: SSX5	Sequence: fasta or formatted (229aa)		NCBI GI: 28559015
Description: synovial sarcoma, X breakpoint 5 isoform a		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [188aa] synovial sarcoma, X breakpoint 5 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.7 13 1 C cysteine 0.9 2 1 D aspartate 5.7 13 2 E glutamate 8.3 19 2 F phenylalanine 4.4 10 1 G glycine 7.9 18 1 H histidine 2.2 5 1 I isoleucine 4.4 10 2 K lysine 10.5 24 1 L leucine 4.4 10 2 M methionine 3.1 7 1 N asparagine 5.2 12 2 P proline 7.4 17 2 Q glutamine 4.8 11 1 R arginine 7.9 18 2 S serine 5.2 12 2 T threonine 3.1 7 1 V valine 5.2 12 1 W tryptophan 1.7 4 1 Y tyrosine 2.2 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synovial sarcoma, X breakpoint 5 isoform a SSX5 0.760 synovial sarcoma, X breakpoint 5 isoform b SSX3 0.639 synovial sarcoma, X breakpoint 3 isoform a SSX2B 0.634 PREDICTED: synovial sarcoma, X breakpoint 2B SSX2 0.634 synovial sarcoma, X breakpoint 2 isoform b SSX7 0.619 synovial sarcoma, X breakpoint 7 SSX9 0.617 synovial sarcoma, X breakpoint 9 SSX4 0.577 synovial sarcoma, X breakpoint 4 isoform a SSX4B 0.577 synovial sarcoma, X breakpoint 4B isoform a SSX1 0.568 synovial sarcoma, X breakpoint 1 SSX6 0.546 synovial sarcoma, X breakpoint 6 SSX3 0.498 synovial sarcoma, X breakpoint 3 isoform b SSX2 0.493 synovial sarcoma, X breakpoint 2 isoform a SSX4 0.300 synovial sarcoma, X breakpoint 4 isoform b SSX4B 0.300 synovial sarcoma, X breakpoint 4B isoform b LOC100291196 0.170 PREDICTED: hypothetical protein XP_002348195 PRDM9 0.108 PR domain containing 9 PRDM7 0.097 PR domain containing 7 isoform 1 ZNF425 0.040 zinc finger protein 425 LOC100293029 0.040 PREDICTED: similar to zinc finger protein 30 LOC100290062 0.040 PREDICTED: hypothetical protein XP_002346980 LOC100289678 0.040 PREDICTED: hypothetical protein XP_002342831 LOC100289678 0.040 PREDICTED: similar to zinc finger protein 30 POGK 0.037 pogo transposable element with KRAB domain ZNF777 0.033 zinc finger protein 777 ZNF688 0.033 zinc finger protein 688 isoform a ZNF398 0.031 zinc finger 398 isoform a ZNF786 0.029 zinc finger protein 786 ZNF75D 0.029 zinc finger protein 75 ZNF551 0.029 zinc finger protein 551 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.