Guide to the Human Genome
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Name: SSX9 Sequence: fasta or formatted (188aa) NCBI GI: 27902281
Description:

synovial sarcoma, X breakpoint 9

Referenced in:

Additional Genes in Development

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.4         12           1
 C cysteine            1.1          2           1
 D aspartate           6.9         13           2
 E glutamate           8.5         16           2
 F phenylalanine       4.3          8           1
 G glycine             6.9         13           1
 H histidine           1.6          3           1
 I isoleucine          5.3         10           2
 K lysine             12.2         23           2
 L leucine             4.3          8           1
 M methionine          3.7          7           1
 N asparagine          4.8          9           1
 P proline             6.9         13           2
 Q glutamine           4.8          9           1
 R arginine            6.4         12           2
 S serine              5.3         10           2
 T threonine           4.3          8           2
 V valine              2.7          5           1
 W tryptophan          1.1          2           1
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synovial sarcoma, X breakpoint 9 
SSX7                  0.896   synovial sarcoma, X breakpoint 7 
SSX2B                 0.868   PREDICTED: synovial sarcoma, X breakpoint 2B 
SSX2                  0.868   synovial sarcoma, X breakpoint 2 isoform b 
SSX3                  0.849   synovial sarcoma, X breakpoint 3 isoform a 
SSX5                  0.822   synovial sarcoma, X breakpoint 5 isoform b 
SSX4                  0.816   synovial sarcoma, X breakpoint 4 isoform a 
SSX4B                 0.816   synovial sarcoma, X breakpoint 4B isoform a 
SSX5                  0.767   synovial sarcoma, X breakpoint 5 isoform a 
SSX1                  0.759   synovial sarcoma, X breakpoint 1 
SSX6                  0.729   synovial sarcoma, X breakpoint 6 
SSX2                  0.688   synovial sarcoma, X breakpoint 2 isoform a 
SSX3                  0.671   synovial sarcoma, X breakpoint 3 isoform b 
SSX4                  0.430   synovial sarcoma, X breakpoint 4 isoform b 
SSX4B                 0.430   synovial sarcoma, X breakpoint 4B isoform b 
LOC100291196          0.189   PREDICTED: hypothetical protein XP_002348195 
PRDM7                 0.151   PR domain containing 7 isoform 1 
PRDM9                 0.148   PR domain containing 9 
ZNF425                0.074   zinc finger protein 425 
ZNF398                0.047   zinc finger 398 isoform a 
LOC100293029          0.044   PREDICTED: similar to zinc finger protein 30 
LOC100290062          0.044   PREDICTED: hypothetical protein XP_002346980 
LOC100289678          0.044   PREDICTED: hypothetical protein XP_002342831 
LOC100289678          0.044   PREDICTED: similar to zinc finger protein 30 
ZNF75D                0.044   zinc finger protein 75 
ZNF777                0.041   zinc finger protein 777 
ZNF30                 0.038   zinc finger protein 30 isoform b 
ZFP92                 0.036   zinc finger protein 92 homolog 
ZNF786                0.036   zinc finger protein 786 
ZNF789                0.036   zinc finger protein 789 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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