SSX4 24806

Name: SSX4	Sequence: fasta or formatted (153aa)		NCBI GI: 28559013
Description: synovial sarcoma, X breakpoint 4 isoform b		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [188aa] synovial sarcoma, X breakpoint 4 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.2 8 2 C cysteine 1.3 2 1 D aspartate 7.8 12 2 E glutamate 4.6 7 1 F phenylalanine 6.5 10 1 G glycine 5.9 9 2 H histidine 1.3 2 1 I isoleucine 2.6 4 1 K lysine 10.5 16 2 L leucine 3.9 6 1 M methionine 5.9 9 1 N asparagine 5.2 8 1 P proline 6.5 10 2 Q glutamine 2.6 4 1 R arginine 9.2 14 2 S serine 7.2 11 2 T threonine 4.6 7 1 V valine 3.9 6 1 W tryptophan 2.0 3 2 Y tyrosine 3.3 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synovial sarcoma, X breakpoint 4 isoform b SSX4B 1.000 synovial sarcoma, X breakpoint 4B isoform b SSX4 0.679 synovial sarcoma, X breakpoint 4 isoform a SSX4B 0.679 synovial sarcoma, X breakpoint 4B isoform a SSX9 0.525 synovial sarcoma, X breakpoint 9 SSX5 0.522 synovial sarcoma, X breakpoint 5 isoform b SSX7 0.505 synovial sarcoma, X breakpoint 7 SSX1 0.498 synovial sarcoma, X breakpoint 1 SSX3 0.495 synovial sarcoma, X breakpoint 3 isoform a SSX3 0.495 synovial sarcoma, X breakpoint 3 isoform b SSX2B 0.495 PREDICTED: synovial sarcoma, X breakpoint 2B SSX2 0.495 synovial sarcoma, X breakpoint 2 isoform b SSX2 0.495 synovial sarcoma, X breakpoint 2 isoform a SSX6 0.465 synovial sarcoma, X breakpoint 6 SSX5 0.455 synovial sarcoma, X breakpoint 5 isoform a PRDM9 0.100 PR domain containing 9 PRDM7 0.100 PR domain containing 7 isoform 1 LOC100293029 0.080 PREDICTED: similar to zinc finger protein 30 LOC100290062 0.080 PREDICTED: hypothetical protein XP_002346980 LOC100289678 0.080 PREDICTED: hypothetical protein XP_002342831 LOC100289678 0.080 PREDICTED: similar to zinc finger protein 30 ZNF425 0.064 zinc finger protein 425 ZNF398 0.057 zinc finger 398 isoform a ZNF862 0.057 zinc finger protein 862 ZNF324B 0.057 zinc finger protein 324B POGK 0.050 pogo transposable element with KRAB domain ZFP92 0.047 zinc finger protein 92 homolog ZNF404 0.047 zinc finger protein 404 ZNF530 0.043 zinc finger protein 530 ZNF777 0.043 zinc finger protein 777 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.