SSX5 24808

Name: SSX5	Sequence: fasta or formatted (188aa)		NCBI GI: 28559017
Description: synovial sarcoma, X breakpoint 5 isoform b		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [229aa] synovial sarcoma, X breakpoint 5 isoform a
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 10 1 C cysteine 0.0 0 0 D aspartate 6.4 12 2 E glutamate 9.0 17 2 F phenylalanine 4.8 9 1 G glycine 7.4 14 1 H histidine 1.6 3 1 I isoleucine 4.3 8 2 K lysine 11.7 22 1 L leucine 3.2 6 1 M methionine 3.7 7 1 N asparagine 5.9 11 2 P proline 7.4 14 2 Q glutamine 5.3 10 1 R arginine 6.9 13 2 S serine 4.8 9 1 T threonine 3.7 7 1 V valine 4.8 9 1 W tryptophan 1.1 2 1 Y tyrosine 2.7 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synovial sarcoma, X breakpoint 5 isoform b SSX5 0.945 synovial sarcoma, X breakpoint 5 isoform a SSX3 0.849 synovial sarcoma, X breakpoint 3 isoform a SSX2B 0.844 PREDICTED: synovial sarcoma, X breakpoint 2B SSX2 0.844 synovial sarcoma, X breakpoint 2 isoform b SSX7 0.825 synovial sarcoma, X breakpoint 7 SSX9 0.822 synovial sarcoma, X breakpoint 9 SSX4 0.773 synovial sarcoma, X breakpoint 4 isoform a SSX4B 0.773 synovial sarcoma, X breakpoint 4B isoform a SSX1 0.762 synovial sarcoma, X breakpoint 1 SSX6 0.734 synovial sarcoma, X breakpoint 6 SSX3 0.674 synovial sarcoma, X breakpoint 3 isoform b SSX2 0.671 synovial sarcoma, X breakpoint 2 isoform a SSX4 0.427 synovial sarcoma, X breakpoint 4 isoform b SSX4B 0.427 synovial sarcoma, X breakpoint 4B isoform b LOC100291196 0.211 PREDICTED: hypothetical protein XP_002348195 PRDM9 0.134 PR domain containing 9 PRDM7 0.121 PR domain containing 7 isoform 1 ZNF425 0.055 zinc finger protein 425 LOC100293029 0.049 PREDICTED: similar to zinc finger protein 30 LOC100290062 0.049 PREDICTED: hypothetical protein XP_002346980 LOC100289678 0.049 PREDICTED: hypothetical protein XP_002342831 LOC100289678 0.049 PREDICTED: similar to zinc finger protein 30 ZNF777 0.049 zinc finger protein 777 ZNF398 0.047 zinc finger 398 isoform a ZNF786 0.044 zinc finger protein 786 ZNF688 0.041 zinc finger protein 688 isoform a ZNF132 0.038 zinc finger protein 132 ZNF75D 0.038 zinc finger protein 75 POGK 0.036 pogo transposable element with KRAB domain Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.