Guide to the Human Genome
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Name: SSX5 Sequence: fasta or formatted (188aa) NCBI GI: 28559017
Description:

synovial sarcoma, X breakpoint 5 isoform b

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [229aa] synovial sarcoma, X breakpoint 5 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.3         10           1
 C cysteine            0.0          0           0
 D aspartate           6.4         12           2
 E glutamate           9.0         17           2
 F phenylalanine       4.8          9           1
 G glycine             7.4         14           1
 H histidine           1.6          3           1
 I isoleucine          4.3          8           2
 K lysine             11.7         22           1
 L leucine             3.2          6           1
 M methionine          3.7          7           1
 N asparagine          5.9         11           2
 P proline             7.4         14           2
 Q glutamine           5.3         10           1
 R arginine            6.9         13           2
 S serine              4.8          9           1
 T threonine           3.7          7           1
 V valine              4.8          9           1
 W tryptophan          1.1          2           1
 Y tyrosine            2.7          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   synovial sarcoma, X breakpoint 5 isoform b 
SSX5                  0.945   synovial sarcoma, X breakpoint 5 isoform a 
SSX3                  0.849   synovial sarcoma, X breakpoint 3 isoform a 
SSX2B                 0.844   PREDICTED: synovial sarcoma, X breakpoint 2B 
SSX2                  0.844   synovial sarcoma, X breakpoint 2 isoform b 
SSX7                  0.825   synovial sarcoma, X breakpoint 7 
SSX9                  0.822   synovial sarcoma, X breakpoint 9 
SSX4                  0.773   synovial sarcoma, X breakpoint 4 isoform a 
SSX4B                 0.773   synovial sarcoma, X breakpoint 4B isoform a 
SSX1                  0.762   synovial sarcoma, X breakpoint 1 
SSX6                  0.734   synovial sarcoma, X breakpoint 6 
SSX3                  0.674   synovial sarcoma, X breakpoint 3 isoform b 
SSX2                  0.671   synovial sarcoma, X breakpoint 2 isoform a 
SSX4                  0.427   synovial sarcoma, X breakpoint 4 isoform b 
SSX4B                 0.427   synovial sarcoma, X breakpoint 4B isoform b 
LOC100291196          0.211   PREDICTED: hypothetical protein XP_002348195 
PRDM9                 0.134   PR domain containing 9 
PRDM7                 0.121   PR domain containing 7 isoform 1 
ZNF425                0.055   zinc finger protein 425 
LOC100293029          0.049   PREDICTED: similar to zinc finger protein 30 
LOC100290062          0.049   PREDICTED: hypothetical protein XP_002346980 
LOC100289678          0.049   PREDICTED: hypothetical protein XP_002342831 
LOC100289678          0.049   PREDICTED: similar to zinc finger protein 30 
ZNF777                0.049   zinc finger protein 777 
ZNF398                0.047   zinc finger 398 isoform a 
ZNF786                0.044   zinc finger protein 786 
ZNF688                0.041   zinc finger protein 688 isoform a 
ZNF132                0.038   zinc finger protein 132 
ZNF75D                0.038   zinc finger protein 75 
POGK                  0.036   pogo transposable element with KRAB domain 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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