SSX3 103

Name: SSX3	Sequence: fasta or formatted (188aa)		NCBI GI: 10337601
Description: synovial sarcoma, X breakpoint 3 isoform a		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [170aa] synovial sarcoma, X breakpoint 3 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 4.8 9 1 C cysteine 0.5 1 1 D aspartate 6.4 12 2 E glutamate 9.6 18 2 F phenylalanine 4.8 9 1 G glycine 6.9 13 1 H histidine 1.1 2 1 I isoleucine 5.9 11 1 K lysine 11.2 21 2 L leucine 3.2 6 1 M methionine 4.3 8 1 N asparagine 4.8 9 1 P proline 8.0 15 2 Q glutamine 5.3 10 1 R arginine 6.4 12 2 S serine 4.3 8 1 T threonine 4.3 8 2 V valine 4.8 9 1 W tryptophan 1.1 2 1 Y tyrosine 2.7 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synovial sarcoma, X breakpoint 3 isoform a SSX2B 0.904 PREDICTED: synovial sarcoma, X breakpoint 2B SSX2 0.904 synovial sarcoma, X breakpoint 2 isoform b SSX9 0.849 synovial sarcoma, X breakpoint 9 SSX5 0.849 synovial sarcoma, X breakpoint 5 isoform b SSX7 0.836 synovial sarcoma, X breakpoint 7 SSX3 0.816 synovial sarcoma, X breakpoint 3 isoform b SSX5 0.795 synovial sarcoma, X breakpoint 5 isoform a SSX4 0.795 synovial sarcoma, X breakpoint 4 isoform a SSX4B 0.795 synovial sarcoma, X breakpoint 4B isoform a SSX6 0.751 synovial sarcoma, X breakpoint 6 SSX1 0.737 synovial sarcoma, X breakpoint 1 SSX2 0.721 synovial sarcoma, X breakpoint 2 isoform a SSX4 0.405 synovial sarcoma, X breakpoint 4 isoform b SSX4B 0.405 synovial sarcoma, X breakpoint 4B isoform b LOC100291196 0.192 PREDICTED: hypothetical protein XP_002348195 PRDM9 0.142 PR domain containing 9 PRDM7 0.137 PR domain containing 7 isoform 1 ZNF425 0.066 zinc finger protein 425 LOC100293029 0.047 PREDICTED: similar to zinc finger protein 30 LOC100290062 0.047 PREDICTED: hypothetical protein XP_002346980 LOC100289678 0.047 PREDICTED: hypothetical protein XP_002342831 LOC100289678 0.047 PREDICTED: similar to zinc finger protein 30 ZNF398 0.047 zinc finger 398 isoform a ZNF777 0.041 zinc finger protein 777 ZNF688 0.041 zinc finger protein 688 isoform a ZNF75D 0.036 zinc finger protein 75 ZFP92 0.036 zinc finger protein 92 homolog ZNF786 0.036 zinc finger protein 786 ZNF862 0.033 zinc finger protein 862 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.