SSX1 31537

Name: SSX1	Sequence: fasta or formatted (188aa)		NCBI GI: 5032121
Description: synovial sarcoma, X breakpoint 1		Referenced in: Additional Genes in Development
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.9 11 1 C cysteine 0.5 1 1 D aspartate 8.5 16 2 E glutamate 7.4 14 2 F phenylalanine 4.3 8 1 G glycine 5.3 10 1 H histidine 3.2 6 1 I isoleucine 5.3 10 2 K lysine 13.8 26 2 L leucine 3.2 6 1 M methionine 3.7 7 1 N asparagine 5.3 10 1 P proline 6.4 12 2 Q glutamine 3.7 7 1 R arginine 6.9 13 2 S serine 5.9 11 1 T threonine 3.7 7 1 V valine 2.7 5 1 W tryptophan 1.1 2 1 Y tyrosine 3.2 6 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synovial sarcoma, X breakpoint 1 SSX6 0.775 synovial sarcoma, X breakpoint 6 SSX4 0.762 synovial sarcoma, X breakpoint 4 isoform a SSX4B 0.762 synovial sarcoma, X breakpoint 4B isoform a SSX5 0.753 synovial sarcoma, X breakpoint 5 isoform b SSX9 0.751 synovial sarcoma, X breakpoint 9 SSX7 0.751 synovial sarcoma, X breakpoint 7 SSX2B 0.748 PREDICTED: synovial sarcoma, X breakpoint 2B SSX2 0.748 synovial sarcoma, X breakpoint 2 isoform b SSX3 0.729 synovial sarcoma, X breakpoint 3 isoform a SSX5 0.699 synovial sarcoma, X breakpoint 5 isoform a SSX2 0.572 synovial sarcoma, X breakpoint 2 isoform a SSX3 0.550 synovial sarcoma, X breakpoint 3 isoform b SSX4 0.404 synovial sarcoma, X breakpoint 4 isoform b SSX4B 0.404 synovial sarcoma, X breakpoint 4B isoform b LOC100291196 0.298 PREDICTED: hypothetical protein XP_002348195 PRDM9 0.182 PR domain containing 9 PRDM7 0.168 PR domain containing 7 isoform 1 ZNF789 0.051 zinc finger protein 789 isoform 1 LOC100293029 0.043 PREDICTED: similar to zinc finger protein 30 LOC100290062 0.043 PREDICTED: hypothetical protein XP_002346980 LOC100289678 0.043 PREDICTED: hypothetical protein XP_002342831 LOC100289678 0.043 PREDICTED: similar to zinc finger protein 30 ZFP92 0.041 zinc finger protein 92 homolog ZNF577 0.041 zinc finger protein 577 isoform b ZNF577 0.041 zinc finger protein 577 isoform a ZNF425 0.041 zinc finger protein 425 ZNF398 0.038 zinc finger 398 isoform a ZNF311 0.038 zinc finger protein 311 ZNF75D 0.035 zinc finger protein 75 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.