SSX4 31538

Name: SSX4	Sequence: fasta or formatted (188aa)		NCBI GI: 5032123
Description: synovial sarcoma, X breakpoint 4 isoform a		Referenced in: Additional Genes in Development
Other entries for this name: alt prot [153aa] synovial sarcoma, X breakpoint 4 isoform b
Composition: Amino acid Percentage Count Longest homopolymer A alanine 5.3 10 2 C cysteine 0.5 1 1 D aspartate 6.9 13 2 E glutamate 9.6 18 3 F phenylalanine 4.8 9 1 G glycine 5.9 11 1 H histidine 2.1 4 1 I isoleucine 3.7 7 1 K lysine 11.7 22 2 L leucine 5.3 10 1 M methionine 3.7 7 1 N asparagine 5.3 10 1 P proline 7.4 14 2 Q glutamine 3.7 7 1 R arginine 7.4 14 2 S serine 5.3 10 2 T threonine 3.2 6 1 V valine 4.3 8 2 W tryptophan 1.1 2 1 Y tyrosine 2.7 5 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 synovial sarcoma, X breakpoint 4 isoform a SSX4B 1.000 synovial sarcoma, X breakpoint 4B isoform a SSX9 0.814 synovial sarcoma, X breakpoint 9 SSX7 0.801 synovial sarcoma, X breakpoint 7 SSX3 0.792 synovial sarcoma, X breakpoint 3 isoform a SSX2B 0.781 PREDICTED: synovial sarcoma, X breakpoint 2B SSX2 0.781 synovial sarcoma, X breakpoint 2 isoform b SSX5 0.770 synovial sarcoma, X breakpoint 5 isoform b SSX1 0.768 synovial sarcoma, X breakpoint 1 SSX6 0.735 synovial sarcoma, X breakpoint 6 SSX5 0.716 synovial sarcoma, X breakpoint 5 isoform a SSX3 0.612 synovial sarcoma, X breakpoint 3 isoform b SSX2 0.604 synovial sarcoma, X breakpoint 2 isoform a SSX4 0.555 synovial sarcoma, X breakpoint 4 isoform b SSX4B 0.555 synovial sarcoma, X breakpoint 4B isoform b LOC100291196 0.197 PREDICTED: hypothetical protein XP_002348195 PRDM9 0.164 PR domain containing 9 PRDM7 0.161 PR domain containing 7 isoform 1 LOC100293029 0.087 PREDICTED: similar to zinc finger protein 30 LOC100290062 0.087 PREDICTED: hypothetical protein XP_002346980 LOC100289678 0.087 PREDICTED: hypothetical protein XP_002342831 LOC100289678 0.087 PREDICTED: similar to zinc finger protein 30 ZNF425 0.068 zinc finger protein 425 ZNF398 0.046 zinc finger 398 isoform a ZNF862 0.046 zinc finger protein 862 POGK 0.041 pogo transposable element with KRAB domain ZFP92 0.038 zinc finger protein 92 homolog ZNF324B 0.038 zinc finger protein 324B ZNF317 0.038 zinc finger protein 317 ZNF75D 0.036 zinc finger protein 75 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.