Guide to the Human Genome
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Name: LOC100290062 Sequence: fasta or formatted (546aa) NCBI GI: 239749287
Description:

PREDICTED: hypothetical protein XP_002346980

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         41           2
 C cysteine            2.4         13           1
 D aspartate           2.9         16           2
 E glutamate           9.3         51           2
 F phenylalanine       2.4         13           2
 G glycine             9.2         50           3
 H histidine           3.1         17           2
 I isoleucine          2.2         12           1
 K lysine              4.2         23           2
 L leucine             8.8         48           3
 M methionine          1.6          9           2
 N asparagine          2.4         13           1
 P proline             9.5         52           2
 Q glutamine           5.7         31           3
 R arginine            9.7         53           3
 S serine              5.1         28           1
 T threonine           5.1         28           1
 V valine              5.1         28           3
 W tryptophan          1.6          9           1
 Y tyrosine            2.0         11           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: hypothetical protein XP_002346980 
LOC100293029          1.000   PREDICTED: similar to zinc finger protein 30 
LOC100289678          1.000   PREDICTED: hypothetical protein XP_002342831 
LOC100289678          1.000   PREDICTED: similar to zinc finger protein 30 
ZNF777                0.322   zinc finger protein 777 
ZNF398                0.291   zinc finger 398 isoform a 
ZNF212                0.278   zinc finger protein 212 
ZNF282                0.262   zinc finger protein 282 
ZNF746                0.213   zinc finger protein 746 
ZNF184                0.107   zinc finger protein 184 
ZNF74                 0.106   zinc finger protein 74 
ZNF251                0.103   zinc finger protein 251 
ZNF324                0.097   zinc finger protein 324 
ZNF8                  0.096   zinc finger protein 8 
ZNF764                0.093   zinc finger protein 764 
REPIN1                0.087   replication initiator 1 isoform 1 
REPIN1                0.087   replication initiator 1 isoform 1 
REPIN1                0.087   replication initiator 1 isoform 3 
REPIN1                0.087   replication initiator 1 isoform 1 
ZNF835                0.084   zinc finger protein 835 
ZNF467                0.082   zinc finger protein 467 
ZNF382                0.081   zinc finger protein 382 
MZF1                  0.080   zinc finger protein 42 isoform 2 
MZF1                  0.080   zinc finger protein 42 isoform 1 
ZNF775                0.080   zinc finger protein 775 
ZSCAN20               0.080   zinc finger protein 31 
ZNF398                0.078   zinc finger 398 isoform b 
ZNF132                0.076   zinc finger protein 132 
ZNF268                0.076   zinc finger protein 268 
ZNF48                 0.076   zinc finger protein 48 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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