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Search of human proteins with 28557798
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28557798 family with sequence similarity 84, member B [Homo
sapiens]
(310 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28557798 family with sequence similarity 84, member B [Homo s... 645 0.0
gi|21553329 family with sequence similarity 84, member A [Homo s... 242 3e-64
gi|149588791 retinoic acid receptor responder (tazarotene induce... 51 1e-06
gi|8923526 HRAS-like suppressor 2 [Homo sapiens] 44 2e-04
gi|189571621 HRAS-like suppressor 3 [Homo sapiens] 43 3e-04
gi|189571618 HRAS-like suppressor 3 [Homo sapiens] 43 3e-04
gi|9966859 HRAS-like suppressor [Homo sapiens] 42 0.001
gi|73476377 LBXCOR1 homolog [Homo sapiens] 37 0.022
gi|74272280 aryl hydrocarbon receptor interacting protein-like 1... 37 0.022
gi|74272278 aryl hydrocarbon receptor interacting protein-like 1... 37 0.022
gi|74272276 aryl hydrocarbon receptor interacting protein-like 1... 37 0.022
gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens] 37 0.029
gi|16905367 HRAS-like suppressor family, member 5 isoform 1 [Hom... 36 0.038
gi|226491950 HRAS-like suppressor family, member 5 isoform 2 [Ho... 36 0.038
gi|112789555 ADAM metallopeptidase with thrombospondin type 1 mo... 36 0.038
gi|61743948 abl-interactor 1 isoform d [Homo sapiens] 35 0.065
gi|61743944 abl-interactor 1 isoform b [Homo sapiens] 35 0.065
gi|61743942 abl-interactor 1 isoform a [Homo sapiens] 35 0.065
gi|146134388 YLP motif containing 1 [Homo sapiens] 35 0.085
gi|11415052 retinoid X receptor, beta [Homo sapiens] 35 0.11
gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 35 0.11
gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens] 35 0.11
gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens] 34 0.19
gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens] 34 0.19
gi|226528146 HRAS-like suppressor family, member 5 isoform 3 [Ho... 34 0.19
gi|87299628 biorientation of chromosomes in cell division 1-like... 34 0.19
gi|18959210 WIRE protein [Homo sapiens] 34 0.19
gi|46249410 lecithin retinol acyltransferase [Homo sapiens] 33 0.25
gi|116256464 hypothetical protein LOC343990 [Homo sapiens] 33 0.32
gi|19718731 bromodomain-containing protein 4 isoform long [Homo ... 33 0.42
>gi|28557798 family with sequence similarity 84, member B [Homo
sapiens]
Length = 310
Score = 645 bits (1663), Expect = 0.0
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 1 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP 60
MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP
Sbjct: 1 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP 60
Query: 61 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD 120
DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD
Sbjct: 61 DGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALSTYTPENLLNKCKPGD 120
Query: 121 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA 180
LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA
Sbjct: 121 LVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVNDLYRYKPLSSSA 180
Query: 181 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH 240
VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH
Sbjct: 181 VVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGGELRIGKQPYRLQIQLSAQRSH 240
Query: 241 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS 300
TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS
Sbjct: 241 TLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTTPPPGRPPAPSS 300
Query: 301 EEEDGEAVAH 310
EEEDGEAVAH
Sbjct: 301 EEEDGEAVAH 310
>gi|21553329 family with sequence similarity 84, member A [Homo
sapiens]
Length = 292
Score = 242 bits (618), Expect = 3e-64
Identities = 136/295 (46%), Positives = 174/295 (58%), Gaps = 35/295 (11%)
Query: 1 MGNQVEKLTHLSYKEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLP 60
MGNQ++++THL+Y E+PT DP+G+++D+ R+GV+Y FS+D+ED++ + G P
Sbjct: 1 MGNQLDRITHLNYSELPTGDPSGIEKDE-LRVGVAYFFSDDEEDLDER---------GQP 50
Query: 61 D--GGDGPPPPQPQPYDPRLH-----------EVECSVFYRDECIYQK-SFAPGSAALST 106
D G PP P P P H E + S F ECI+ K S P A LS
Sbjct: 51 DKFGVKAPPGCTPCPESPSRHQHHLLHQLVLNETQFSAFRGQECIFSKVSGGPQGADLSV 110
Query: 107 YTPENLLNKCKPGDLVEFV-------SQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDAS 159
Y L C+PGDL+E + A PHWAVYVG Q++HLH+ E+ L +A
Sbjct: 111 YAVTALPALCEPGDLLELLWLQPAPEPPAPAPHWAVYVGGGQIIHLHQGEIRQDSLYEAG 170
Query: 160 QGRRGRVVNDLYRYKPLSSSAVVRNALAHVGAKERELSWRNSESFAAWCRYGKREFKIGG 219
GRVVN YRY+PL + VV+NA H+G K E+ W NSESFAAWCR+GKREFK GG
Sbjct: 171 AANVGRVVNSWYRYRPLVAELVVQNACGHLGLKSEEICWTNSESFAAWCRFGKREFKAGG 230
Query: 220 ELRIGKQP----YRLQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELA 270
E+ G QP Y L++ L + HT F SLEDLI EKRR D GR VLQELA
Sbjct: 231 EVPAGTQPPQQQYYLKVHLGENKVHTARFHSLEDLIREKRRIDASGRLRVLQELA 285
>gi|149588791 retinoic acid receptor responder (tazarotene induced)
3 [Homo sapiens]
Length = 164
Score = 51.2 bits (121), Expect = 1e-06
Identities = 39/121 (32%), Positives = 54/121 (44%), Gaps = 22/121 (18%)
Query: 117 KPGDLVEFVSQAQYPHWAVYVGNFQVVHL-------------------HRLEVINSFLTD 157
KPGDL+E + + Y HWA+Y+G+ V+HL + EV L D
Sbjct: 9 KPGDLIE-IFRLGYEHWALYIGDGYVIHLAPPSEYPGAGSSSVFSVLSNSAEVKRERLED 67
Query: 158 ASQGRRGRVVNDL-YRYKPLSSSAVVRNALAHVGAKER-ELSWRNSESFAAWCRYGKREF 215
G RV N L + Y+P ++ +A VG K + + RN E F RYGK
Sbjct: 68 VVGGCCYRVNNSLDHEYQPRPVEVIISSAKEMVGQKMKYSIVSRNCEHFVTQLRYGKSRC 127
Query: 216 K 216
K
Sbjct: 128 K 128
>gi|8923526 HRAS-like suppressor 2 [Homo sapiens]
Length = 162
Score = 43.5 bits (101), Expect = 2e-04
Identities = 38/114 (33%), Positives = 52/114 (45%), Gaps = 22/114 (19%)
Query: 119 GDLVEFVSQAQYPHWAVYVGNFQVVHL-------------------HRLEVINSFLTDAS 159
GDL+E +S+ Y HWA+YVG+ VVHL ++ V L+ +
Sbjct: 11 GDLIE-ISRFGYAHWAIYVGDGYVVHLAPASEIAGAGAASVLSALTNKAIVKKELLSVVA 69
Query: 160 QGRRGRVVNDL-YRYKPLSSSAVVRNALAHVGAK-ERELSWRNSESFAAWCRYG 211
G RV N RY PL S+ +V+ A VG + L+ N E F RYG
Sbjct: 70 GGDNYRVNNKHDDRYTPLPSNKIVKRAEELVGQELPYSLTSDNCEHFVNHLRYG 123
>gi|189571621 HRAS-like suppressor 3 [Homo sapiens]
Length = 162
Score = 43.1 bits (100), Expect = 3e-04
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 22/116 (18%)
Query: 117 KPGDLVEFVSQAQYPHWAVYVGNFQVVHL--------HRLEVINSFLTDAS--------- 159
KPGDL+E + + Y HWA+YVG+ VVHL + S LTD +
Sbjct: 9 KPGDLIE-IFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYD 67
Query: 160 -QGRRGRVVNDLY--RYKPLSSSAVVRNALAHVGAKE-RELSWRNSESFAAWCRYG 211
G VN+ + +Y PL S +++ A VG + +L+ N E F RYG
Sbjct: 68 VAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNELRYG 123
>gi|189571618 HRAS-like suppressor 3 [Homo sapiens]
Length = 162
Score = 43.1 bits (100), Expect = 3e-04
Identities = 38/116 (32%), Positives = 54/116 (46%), Gaps = 22/116 (18%)
Query: 117 KPGDLVEFVSQAQYPHWAVYVGNFQVVHL--------HRLEVINSFLTDAS--------- 159
KPGDL+E + + Y HWA+YVG+ VVHL + S LTD +
Sbjct: 9 KPGDLIE-IFRPFYRHWAIYVGDGYVVHLAPPSEVAGAGAASVMSALTDKAIVKKELLYD 67
Query: 160 -QGRRGRVVNDLY--RYKPLSSSAVVRNALAHVGAKE-RELSWRNSESFAAWCRYG 211
G VN+ + +Y PL S +++ A VG + +L+ N E F RYG
Sbjct: 68 VAGSDKYQVNNKHDDKYSPLPCSKIIQRAEELVGQEVLYKLTSENCEHFVNELRYG 123
>gi|9966859 HRAS-like suppressor [Homo sapiens]
Length = 168
Score = 41.6 bits (96), Expect = 0.001
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 22/119 (18%)
Query: 114 NKCKPGDLVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDAS-----------QGR 162
N C PGDL+E V + Y HWA+Y+G+ V+++ ++ I + T A Q
Sbjct: 14 NPC-PGDLIE-VFRPGYQHWALYLGDGYVINIAPVDGIPASFTSAKSVFSSKALVKMQLL 71
Query: 163 RGRVVNDLYR--------YKPLSSSAVVRNALAHVGAK-ERELSWRNSESFAAWCRYGK 212
+ V ND YR Y PL +++ + +G + L N E F RYG+
Sbjct: 72 KDVVGNDTYRINNKYDETYPPLPVEEIIKRSEFVIGQEVAYNLLVNNCEHFVTLLRYGE 130
>gi|73476377 LBXCOR1 homolog [Homo sapiens]
Length = 921
Score = 37.0 bits (84), Expect = 0.022
Identities = 18/46 (39%), Positives = 21/46 (45%)
Query: 24 VDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLPDGGDGPPPP 69
VD D P + V DDED + + P P GG PDG PP
Sbjct: 609 VDTADEPEVDVESNRFPDDEDAQEETEPSAPSAGGGPDGEQPTGPP 654
>gi|74272280 aryl hydrocarbon receptor interacting protein-like 1
isoform 3 [Homo sapiens]
Length = 324
Score = 37.0 bits (84), Expect = 0.022
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 230 LQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTT 289
L+++ S Q++ E + LE+ + EK+ +++ +L + AT PAEP + T
Sbjct: 231 LELEPSMQKAVRRELRLLENRMAEKQEEERLRCRNMLSQGATQ-PPAEPPTEPPAQSSTE 289
Query: 290 PPPGRPPAPSSEEEDG 305
PP P APS+E G
Sbjct: 290 PPAEPPTAPSAELSAG 305
>gi|74272278 aryl hydrocarbon receptor interacting protein-like 1
isoform 2 [Homo sapiens]
Length = 321
Score = 37.0 bits (84), Expect = 0.022
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 230 LQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTT 289
L+++ S Q++ E + LE+ + EK+ +++ +L + AT PAEP + T
Sbjct: 228 LELEPSMQKAVRRELRLLENRMAEKQEEERLRCRNMLSQGATQ-PPAEPPTEPPAQSSTE 286
Query: 290 PPPGRPPAPSSEEEDG 305
PP P APS+E G
Sbjct: 287 PPAEPPTAPSAELSAG 302
>gi|74272276 aryl hydrocarbon receptor interacting protein-like 1
isoform 1 [Homo sapiens]
Length = 384
Score = 37.0 bits (84), Expect = 0.022
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 230 LQIQLSAQRSHTLEFQSLEDLIMEKRRNDQIGRAAVLQELATHLHPAEPEEGDSNVARTT 289
L+++ S Q++ E + LE+ + EK+ +++ +L + AT PAEP + T
Sbjct: 291 LELEPSMQKAVRRELRLLENRMAEKQEEERLRCRNMLSQGATQ-PPAEPPTEPPAQSSTE 349
Query: 290 PPPGRPPAPSSEEEDG 305
PP P APS+E G
Sbjct: 350 PPAEPPTAPSAELSAG 365
>gi|154800441 proline-rich protein HaeIII subfamily 1 [Homo sapiens]
Length = 166
Score = 36.6 bits (83), Expect = 0.029
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 25 DRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLPDGGDGPPPPQPQPYDP 76
++DDGP+ G + + PPPQG G P G PPPPQ +P P
Sbjct: 64 NQDDGPQQGPP---QQGGQQQQGPPPPQGKPQGP-PQQGGHPPPPQGRPQGP 111
Score = 28.9 bits (63), Expect = 6.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 47 PQPPPQGPDGGGLPDGGDGPPPPQPQ 72
P PPP G G P GG PPQ Q
Sbjct: 138 PPPPPPGKPQGPPPQGGRPQGPPQGQ 163
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 47 PQPP---PQG-PDGGGLPDGGDGPPPPQPQPYDPR 77
P+PP PQG P GG G PPP +PQ P+
Sbjct: 118 PRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQ 152
>gi|16905367 HRAS-like suppressor family, member 5 isoform 1 [Homo
sapiens]
Length = 279
Score = 36.2 bits (82), Expect = 0.038
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 117 KPGDLVEFVSQAQYPHWAVYVGNFQVVHL-----------------HRLEVINSFLTDAS 159
+PGDL+E + + Y HWA+YV + VVHL +R V S L D
Sbjct: 131 RPGDLIE-IFRIGYEHWAIYVEDDCVVHLAPPSEEFEVGSITSIFSNRAVVKYSRLEDVL 189
Query: 160 QGRRGRVVNDL-YRYKPLSSSAVVRNALAHVG-AKERELSWRNSESFAAWCRYG 211
G +V N L Y PL +++ V + L N E F RYG
Sbjct: 190 HGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYG 243
>gi|226491950 HRAS-like suppressor family, member 5 isoform 2 [Homo
sapiens]
Length = 269
Score = 36.2 bits (82), Expect = 0.038
Identities = 35/114 (30%), Positives = 47/114 (41%), Gaps = 20/114 (17%)
Query: 117 KPGDLVEFVSQAQYPHWAVYVGNFQVVHL-----------------HRLEVINSFLTDAS 159
+PGDL+E + + Y HWA+YV + VVHL +R V S L D
Sbjct: 121 RPGDLIE-IFRIGYEHWAIYVEDDCVVHLAPPSEEFEVGSITSIFSNRAVVKYSRLEDVL 179
Query: 160 QGRRGRVVNDL-YRYKPLSSSAVVRNALAHVG-AKERELSWRNSESFAAWCRYG 211
G +V N L Y PL +++ V + L N E F RYG
Sbjct: 180 HGCSWKVNNKLDGTYLPLPVDKIIQRTKKMVNKIVQYSLIEGNCEHFVNGLRYG 233
>gi|112789555 ADAM metallopeptidase with thrombospondin type 1
motif, 19 preproprotein [Homo sapiens]
Length = 1207
Score = 36.2 bits (82), Expect = 0.038
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 41 DDEDVEPQPPPQGPDGG-----GLPDGGDGPPPPQPQPYDPRLHEVE 82
+DE++E Q P+G G G P PPPPQP P P E
Sbjct: 113 EDEELESQELPRGSSGAAALSPGAPASWQPPPPPQPPPSPPPAQHAE 159
>gi|61743948 abl-interactor 1 isoform d [Homo sapiens]
Length = 476
Score = 35.4 bits (80), Expect = 0.065
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 30 PRIGVSYIFSNDDEDVEPQP-PPQGPDGGGLPDGGDGPPPPQPQPYDPRLHEVECSVFYR 88
P+I ++ + E++ P PP P +P D PPPP P P D + E +V
Sbjct: 342 PQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVD--YEDEEAAVVQ- 398
Query: 89 DECIYQKSFAPGSAALSTYTPENLLNK 115
Y +A G A + P+N + K
Sbjct: 399 ----YNDPYADGDPA---WAPKNYIEK 418
>gi|61743944 abl-interactor 1 isoform b [Homo sapiens]
Length = 481
Score = 35.4 bits (80), Expect = 0.065
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 30 PRIGVSYIFSNDDEDVEPQP-PPQGPDGGGLPDGGDGPPPPQPQPYDPRLHEVECSVFYR 88
P+I ++ + E++ P PP P +P D PPPP P P D + E +V
Sbjct: 347 PQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVD--YEDEEAAVVQ- 403
Query: 89 DECIYQKSFAPGSAALSTYTPENLLNK 115
Y +A G A + P+N + K
Sbjct: 404 ----YNDPYADGDPA---WAPKNYIEK 423
>gi|61743942 abl-interactor 1 isoform a [Homo sapiens]
Length = 508
Score = 35.4 bits (80), Expect = 0.065
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 11/87 (12%)
Query: 30 PRIGVSYIFSNDDEDVEPQP-PPQGPDGGGLPDGGDGPPPPQPQPYDPRLHEVECSVFYR 88
P+I ++ + E++ P PP P +P D PPPP P P D + E +V
Sbjct: 374 PQIPLTGFVARVQENIADSPTPPPPPPPDDIPMFDDSPPPPPPPPVD--YEDEEAAVVQ- 430
Query: 89 DECIYQKSFAPGSAALSTYTPENLLNK 115
Y +A G A + P+N + K
Sbjct: 431 ----YNDPYADGDPA---WAPKNYIEK 450
>gi|146134388 YLP motif containing 1 [Homo sapiens]
Length = 2146
Score = 35.0 bits (79), Expect = 0.085
Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 1/63 (1%)
Query: 47 PQPPPQGPDGGGLPDGGDGPPPPQPQPYDPRLHEVECSVFYRDECIYQKSFAPGSAALST 106
P PPP GGG D PPPP P P P L + + +Q+ PG +
Sbjct: 85 PLPPPPVMPGGGYGD-WQPPPPPMPPPPGPALSYQKQQQYKHQMLHHQRDGPPGLVPMEL 143
Query: 107 YTP 109
+P
Sbjct: 144 ESP 146
>gi|11415052 retinoid X receptor, beta [Homo sapiens]
Length = 533
Score = 34.7 bits (78), Expect = 0.11
Identities = 25/74 (33%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 14 KEVPTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQG-----PDGGGLPD------G 62
++ P +P RD +G S S + P P PQG P G LP G
Sbjct: 58 QQTPEPEPGEAGRDG---MGDSGRDSRSPDSSSPNPLPQGVPPPSPPGPPLPPSTAPSLG 114
Query: 63 GDGPPPPQPQPYDP 76
G G PPP P P P
Sbjct: 115 GSGAPPPPPMPPPP 128
>gi|158966674 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 34.7 bits (78), Expect = 0.11
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 25 DRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLPDGGDGPPPPQPQPYDP 76
+++DGP+ G + + PPPQG G P G PPPPQ +P P
Sbjct: 64 NQNDGPQQGPP---QQGGQQQQGPPPPQGKPQGP-PQQGGHPPPPQGRPQGP 111
Score = 28.9 bits (63), Expect = 6.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 47 PQPPPQGPDGGGLPDGGDGPPPPQPQ 72
P PPP G G P GG PPQ Q
Sbjct: 138 PPPPPPGKPQGPPPQGGRPQGPPQGQ 163
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 47 PQPP---PQG-PDGGGLPDGGDGPPPPQPQPYDPR 77
P+PP PQG P GG G PPP +PQ P+
Sbjct: 118 PRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQ 152
>gi|4826944 proline-rich protein HaeIII subfamily 2 [Homo sapiens]
Length = 166
Score = 34.7 bits (78), Expect = 0.11
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Query: 25 DRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLPDGGDGPPPPQPQPYDP 76
+++DGP+ G + + PPPQG G P G PPPPQ +P P
Sbjct: 64 NQNDGPQQGPP---QQGGQQQQGPPPPQGKPQGP-PQQGGHPPPPQGRPQGP 111
Score = 28.9 bits (63), Expect = 6.1
Identities = 13/26 (50%), Positives = 13/26 (50%)
Query: 47 PQPPPQGPDGGGLPDGGDGPPPPQPQ 72
P PPP G G P GG PPQ Q
Sbjct: 138 PPPPPPGKPQGPPPQGGRPQGPPQGQ 163
Score = 28.5 bits (62), Expect = 7.9
Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%)
Query: 47 PQPP---PQG-PDGGGLPDGGDGPPPPQPQPYDPR 77
P+PP PQG P GG G PPP +PQ P+
Sbjct: 118 PRPPRGRPQGPPQQGGHQQGPPPPPPGKPQGPPPQ 152
>gi|25470890 DAZ associated protein 1 isoform a [Homo sapiens]
Length = 378
Score = 33.9 bits (76), Expect = 0.19
Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 21 PTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQG-PDGGGLPDG---GDGPPPPQPQPYDP 76
P G P SYI S PPPQG P G G P G GPPPP P + P
Sbjct: 250 PAGRGAPPPPPPFTSYIVSTPPGGF---PPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAP 306
>gi|25470886 DAZ associated protein 1 isoform b [Homo sapiens]
Length = 407
Score = 33.9 bits (76), Expect = 0.19
Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 7/60 (11%)
Query: 21 PTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQG-PDGGGLPDG---GDGPPPPQPQPYDP 76
P G P SYI S PPPQG P G G P G GPPPP P + P
Sbjct: 250 PAGRGAPPPPPPFTSYIVSTPPGGF---PPPQGFPQGYGAPPQFSFGYGPPPPPPDQFAP 306
>gi|226528146 HRAS-like suppressor family, member 5 isoform 3 [Homo
sapiens]
Length = 253
Score = 33.9 bits (76), Expect = 0.19
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 117 KPGDLVEFVSQAQYPHWAVYVGNFQVVHL 145
+PGDL+E + + Y HWA+YV + VVHL
Sbjct: 131 RPGDLIE-IFRIGYEHWAIYVEDDCVVHL 158
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 33.9 bits (76), Expect = 0.19
Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 10/31 (32%)
Query: 46 EPQPPPQGPDGGGLPDGGDGPPPPQPQPYDP 76
+PQPPP P PPPPQPQP P
Sbjct: 6 QPQPPPPAPP----------PPPPQPQPQPP 26
>gi|18959210 WIRE protein [Homo sapiens]
Length = 440
Score = 33.9 bits (76), Expect = 0.19
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 37 IFSNDDEDVEPQPPPQGPDGGGLPDGGDGPPPPQPQPYDP 76
+ N D P PPP G P G PPPP P P
Sbjct: 331 VIRNGARDAPPPPPPYRMHGSEPPSRGKPPPPPSRTPAGP 370
>gi|46249410 lecithin retinol acyltransferase [Homo sapiens]
Length = 230
Score = 33.5 bits (75), Expect = 0.25
Identities = 32/128 (25%), Positives = 49/128 (38%), Gaps = 39/128 (30%)
Query: 119 GDLVEFVSQAQYPHWAVYVGNFQVVHLHRLEVINSFLTDASQGRRGRVVN---------- 168
GD++E V + H+ +Y+G+ +V H+ + I LTD GR +VV+
Sbjct: 48 GDVLE-VPRTHLTHYGIYLGDNRVAHM--MPDILLALTD-DMGRTQKVVSNKRLILGVIV 103
Query: 169 -------------------------DLYRYKPLSSSAVVRNALAHVGAKERELSWRNSES 203
+ + K L + V R A +G L W N E
Sbjct: 104 KVASIRVDTVEDFAYGANILVNHLDESLQKKALLNEEVARRAEKLLGFTPYSLLWNNCEH 163
Query: 204 FAAWCRYG 211
F +CRYG
Sbjct: 164 FVTYCRYG 171
>gi|116256464 hypothetical protein LOC343990 [Homo sapiens]
Length = 962
Score = 33.1 bits (74), Expect = 0.32
Identities = 20/44 (45%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Query: 45 VEPQPPPQGPDGGGLPDGG--DGPPPPQP--QPYDPRLHEVECS 84
VEP PP+GP G PDGG DG PP P + EV C+
Sbjct: 352 VEPPSPPEGPPNPG-PDGGKQDGEAPPAGPCAPATDKAEEVVCA 394
Score = 29.3 bits (64), Expect = 4.7
Identities = 19/57 (33%), Positives = 22/57 (38%), Gaps = 14/57 (24%)
Query: 17 PTADPTGVDRDDGPRIGVSYIFSNDDEDVEPQPPPQGPDGGGLPDGGDGPPPPQPQP 73
P A DGP V ++ EP PP LPD GPP P P+P
Sbjct: 418 PAATSEAPSARDGPERSVP-------KEAEPTPPV-------LPDEEKGPPGPAPEP 460
>gi|19718731 bromodomain-containing protein 4 isoform long [Homo
sapiens]
Length = 1362
Score = 32.7 bits (73), Expect = 0.42
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 46 EPQPPPQGPDGGGLPDGGDGPPPPQPQPYDPR 77
+P PPPQ P P PPPP P P P+
Sbjct: 756 QPPPPPQQPPPPPPPQQQQQPPPPPPPPSMPQ 787
Score = 29.3 bits (64), Expect = 4.7
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 47 PQPPPQGPD-GGGLPDGGDGPPPPQPQPYDPRLHE 80
P PPP P L PPPPQPQP + H+
Sbjct: 957 PLPPPPHPSVQQQLQQQPPPPPPPQPQPPPQQQHQ 991
Score = 29.3 bits (64), Expect = 4.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 45 VEPQPPPQGPDGGGLPDGGDGPPPPQP 71
++ PPPQG P G PPPPQP
Sbjct: 1008 IQQPPPPQGQQPPH-PPPGQQPPPPQP 1033
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.314 0.135 0.411
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,286,883
Number of Sequences: 37866
Number of extensions: 1011882
Number of successful extensions: 8746
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 200
Number of HSP's that attempted gapping in prelim test: 6883
Number of HSP's gapped (non-prelim): 1772
length of query: 310
length of database: 18,247,518
effective HSP length: 102
effective length of query: 208
effective length of database: 14,385,186
effective search space: 2992118688
effective search space used: 2992118688
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.