Guide to the Human Genome
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Name: LRAT Sequence: fasta or formatted (230aa) NCBI GI: 46249410
Description:

lecithin retinol acyltransferase

Referenced in:

Lipid Metabolism
Photoreceptors and Related Functions
Vitamin Pathways, Coenzymes, and 1-Carbon Metabolism

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         15           2
 C cysteine            1.7          4           1
 D aspartate           4.8         11           2
 E glutamate           5.2         12           2
 F phenylalanine       4.8         11           2
 G glycine             6.1         14           1
 H histidine           2.6          6           1
 I isoleucine          6.1         14           3
 K lysine              4.8         11           2
 L leucine            13.5         31           3
 M methionine          2.6          6           2
 N asparagine          4.3         10           2
 P proline             3.5          8           1
 Q glutamine           1.7          4           1
 R arginine            5.2         12           2
 S serine              7.4         17           2
 T threonine           6.1         14           2
 V valine              8.7         20           2
 W tryptophan          0.9          2           1
 Y tyrosine            3.5          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   lecithin retinol acyltransferase 
HRASLS                0.097   HRAS-like suppressor 
HRASLS2               0.095   HRAS-like suppressor 2 
HRASLS5               0.074   HRAS-like suppressor family, member 5 isoform 1 [Hom...
HRASLS5               0.074   HRAS-like suppressor family, member 5 isoform 2 [Ho...
RARRES3               0.074   retinoic acid receptor responder (tazarotene induce...
PLA2G16               0.069   HRAS-like suppressor 3 
PLA2G16               0.069   HRAS-like suppressor 3 
HRASLS5               0.030   HRAS-like suppressor family, member 5 isoform 3 [Ho...
FAM84B                0.019   family with sequence similarity 84, member B 
FAM84A                0.012   family with sequence similarity 84, member A 
PTPN4                 0.009   protein tyrosine phosphatase, non-receptor type 4 [Ho...
KIAA1012              0.007   hypothetical protein LOC22878 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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