Guide to the Human Genome
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Name: FAM84A Sequence: fasta or formatted (292aa) NCBI GI: 21553329
Description:

family with sequence similarity 84, member A

Referenced in:

Mammary Tissues

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.9         23           2
 C cysteine            2.4          7           1
 D aspartate           5.5         16           2
 E glutamate           8.6         25           2
 F phenylalanine       3.4         10           2
 G glycine             8.9         26           3
 H histidine           4.1         12           2
 I isoleucine          3.1          9           2
 K lysine              3.8         11           1
 L leucine            10.6         31           2
 M methionine          0.3          1           1
 N asparagine          2.7          8           1
 P proline             7.2         21           2
 Q glutamine           5.8         17           3
 R arginine            5.8         17           2
 S serine              5.5         16           1
 T threonine           2.7          8           1
 V valine              6.8         20           2
 W tryptophan          1.7          5           1
 Y tyrosine            3.1          9           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 84, member A 
FAM84B                0.370   family with sequence similarity 84, member B 
RARRES3               0.034   retinoic acid receptor responder (tazarotene induce...
GLIS2                 0.022   GLIS family zinc finger 2 
IER5L                 0.017   immediate early response 5-like 
PLA2G16               0.015   HRAS-like suppressor 3 
PLA2G16               0.015   HRAS-like suppressor 3 
FAM75A6               0.014   hypothetical protein LOC389730 
FAM75A2               0.014   hypothetical protein LOC642265 
FAM75A4               0.014   PREDICTED: family with sequence similarity 75, memb...
FAM75A4               0.014   PREDICTED: family with sequence similarity 75, memb...
FAM75A7               0.014   hypothetical protein LOC26165 
FAM75A1               0.014   hypothetical protein LOC647060 
FAM75A5               0.014   hypothetical protein LOC727905 
FAM75A3               0.012   hypothetical protein LOC727830 
ONECUT3               0.012   one cut homeobox 3 
FOXI2                 0.010   forkhead box I2 
HMCN1                 0.010   hemicentin 1 
HRASLS2               0.010   HRAS-like suppressor 2 
CAMTA2                0.009   calmodulin binding transcription activator 2 
THSD4                 0.009   thrombospondin, type I, domain containing 4 
LRAT                  0.009   lecithin retinol acyltransferase 
PLSCR2                0.009   phospholipid scramblase 2 
RUFY3                 0.007   RUN and FYVE domain containing 3 isoform 2 
RUFY3                 0.007   RUN and FYVE domain containing 3 isoform 1 
CTSW                  0.007   cathepsin W preproprotein 
PSD                   0.007   pleckstrin and Sec7 domain containing 
FAM75C1               0.007   family with sequence similarity 75, member C1 [Homo...
CASR                  0.007   calcium-sensing receptor 
BSN                   0.007   bassoon protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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