Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 28416940
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28416940 Shwachman-Bodian-Diamond syndrome protein [Homo
sapiens]
(250 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|28416940 Shwachman-Bodian-Diamond syndrome protein [Homo sapi... 492 e-139
gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens] 38 0.009
gi|77404397 staphylococcal nuclease domain containing 1 [Homo sa... 35 0.061
gi|187608545 centrosomal protein 55kDa [Homo sapiens] 33 0.18
gi|187608537 centrosomal protein 55kDa [Homo sapiens] 33 0.18
gi|112382372 guanylate binding protein 3 [Homo sapiens] 33 0.18
gi|7662126 signal-induced proliferation-associated 1 like 1 [Hom... 32 0.52
gi|4758220 XAP-5 protein [Homo sapiens] 32 0.68
gi|118498362 kinectin 1 isoform b [Homo sapiens] 31 0.89
gi|116089337 IQ motif containing GTPase activating protein 2 [Ho... 31 0.89
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 31 1.2
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 31 1.2
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 31 1.2
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 31 1.2
gi|24308179 CTTNBP2 N-terminal like [Homo sapiens] 31 1.2
gi|87299628 biorientation of chromosomes in cell division 1-like... 30 2.0
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ... 30 2.0
gi|4503509 eukaryotic translation initiation factor 3, subunit 1... 30 2.6
gi|219555661 intraflagellar transport 81-like isoform 1 [Homo sa... 30 2.6
gi|32526901 intraflagellar transport 81-like isoform 1 [Homo sap... 30 2.6
gi|224586823 coiled-coil domain containing 110 isoform b [Homo s... 30 2.6
gi|22749515 coiled-coil domain containing 110 isoform a [Homo sa... 30 2.6
gi|41393610 Ras association (RalGDS/AF-6) domain family 6 isofor... 30 2.6
gi|29789443 Ras association (RalGDS/AF-6) domain family 6 isofor... 30 2.6
gi|4885583 Rho-associated, coiled-coil containing protein kinase... 29 3.4
gi|6912396 glyoxylate reductase/hydroxypyruvate reductase [Homo ... 29 3.4
gi|31982906 cingulin-like 1 [Homo sapiens] 29 3.4
gi|16306568 poly(A) polymerase gamma [Homo sapiens] 29 3.4
gi|64085252 hypothetical protein LOC145508 [Homo sapiens] 29 3.4
gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens] 29 4.4
>gi|28416940 Shwachman-Bodian-Diamond syndrome protein [Homo
sapiens]
Length = 250
Score = 492 bits (1267), Expect = e-139
Identities = 250/250 (100%), Positives = 250/250 (100%)
Query: 1 MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV 60
MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV
Sbjct: 1 MSIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNV 60
Query: 61 SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV 120
SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV
Sbjct: 61 SKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCV 120
Query: 121 NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV 180
NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV
Sbjct: 121 NPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPV 180
Query: 181 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK 240
NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK
Sbjct: 181 NEGKKLKEKLKPLIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVLNLK 240
Query: 241 DVEEGDEKFE 250
DVEEGDEKFE
Sbjct: 241 DVEEGDEKFE 250
>gi|6715600 golgi autoantigen, golgin subfamily a, 4 [Homo sapiens]
Length = 2230
Score = 37.7 bits (86), Expect = 0.009
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 15/181 (8%)
Query: 39 WRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDK 98
W + + +E+ + H + + + +VA+ + I FG + + E+ K+I E V
Sbjct: 1047 WEKKLNQQAEELQEIHEIQLQEKEQEVAELKQKILLFGCEKE-EMNKEITWLKEEGVKQD 1105
Query: 99 ERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVI 158
+L++ + + V + ETK +E+ D++ S+K N ++Q +E +
Sbjct: 1106 TTLNELQEQLKQKSAHV-NSLAQDETK---LKAHLEKLEVDLNKSLKENTFLQEQLVE-L 1160
Query: 159 KQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIE---------SEDYGQQLEIV 209
K L E+ K + + + + E + LK + K +E SE+ QL+I
Sbjct: 1161 KMLAEEDKRKVSELTSKLKTTDEEFQSLKSSHEKSNKSLEDKSLEFKKLSEELAIQLDIC 1220
Query: 210 C 210
C
Sbjct: 1221 C 1221
>gi|77404397 staphylococcal nuclease domain containing 1 [Homo
sapiens]
Length = 910
Score = 35.0 bits (79), Expect = 0.061
Identities = 23/84 (27%), Positives = 41/84 (48%), Gaps = 5/84 (5%)
Query: 129 TVILIERAMKDIHYSVKTNKSTKQ--QALEVIKQLKEKMKIERAHMRLRFILPVNEGKKL 186
+V+L+E A+ +H++ + + K A E KQ KEK+ + ++PV E K+
Sbjct: 619 SVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPVLEEKER 678
Query: 187 KEKLKPLIKVIESED---YGQQLE 207
KP+ ++D Y Q +E
Sbjct: 679 SASYKPVFVTEITDDLHFYVQDVE 702
>gi|187608545 centrosomal protein 55kDa [Homo sapiens]
Length = 464
Score = 33.5 bits (75), Expect = 0.18
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 18/151 (11%)
Query: 88 LTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTN 147
+T G+ +++DKERH LE+ I + A+K K Y + ++ ++ + +K
Sbjct: 44 ITSGKGKLTDKERHRLLEK----IRVLEAEK-----EKNAYQLTEKDKEIQRLRDQLKAR 94
Query: 148 KSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKK-LKEKLKPLI-KVIESEDYGQQ 205
ST +++QL+E + R + + ++E K LK++L ++ E E
Sbjct: 95 YST----TALLEQLEETTR--EGERREQVLKALSEEKDVLKQQLSAATSRIAELESKTNT 148
Query: 206 LEIVCLIDPGCFR-EIDELIKKETKGKGSLE 235
L + + P CF I+ + + E + K +LE
Sbjct: 149 LRLSQTVAPNCFNSSINNIHEMEIQLKDALE 179
>gi|187608537 centrosomal protein 55kDa [Homo sapiens]
Length = 464
Score = 33.5 bits (75), Expect = 0.18
Identities = 37/151 (24%), Positives = 72/151 (47%), Gaps = 18/151 (11%)
Query: 88 LTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTN 147
+T G+ +++DKERH LE+ I + A+K K Y + ++ ++ + +K
Sbjct: 44 ITSGKGKLTDKERHRLLEK----IRVLEAEK-----EKNAYQLTEKDKEIQRLRDQLKAR 94
Query: 148 KSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKK-LKEKLKPLI-KVIESEDYGQQ 205
ST +++QL+E + R + + ++E K LK++L ++ E E
Sbjct: 95 YST----TALLEQLEETTR--EGERREQVLKALSEEKDVLKQQLSAATSRIAELESKTNT 148
Query: 206 LEIVCLIDPGCFR-EIDELIKKETKGKGSLE 235
L + + P CF I+ + + E + K +LE
Sbjct: 149 LRLSQTVAPNCFNSSINNIHEMEIQLKDALE 179
>gi|112382372 guanylate binding protein 3 [Homo sapiens]
Length = 595
Score = 33.5 bits (75), Expect = 0.18
Identities = 36/150 (24%), Positives = 67/150 (44%), Gaps = 17/150 (11%)
Query: 80 QTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKD 139
Q E Q K + V+D T +Q+ + + +CV E+ + ++ E +K
Sbjct: 454 QAEEILQTYLKSKESVTDAILQT--DQILTEKEKEIEVECVKAESAQASAKMVEEMQIKY 511
Query: 140 IHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIES 199
+ KS ++ +KQL EKM+ ERA L + K L KL+ +V++
Sbjct: 512 QQMMEEKEKSYQEH----VKQLTEKMERERAQ------LLEEQEKTLTSKLQEQARVLKE 561
Query: 200 EDYGQQLEIVCLIDPGCFREIDELIKKETK 229
G+ ++ I +++ + +KK+TK
Sbjct: 562 RCQGESTQLQNEI-----QKLQKTLKKKTK 586
>gi|7662126 signal-induced proliferation-associated 1 like 1 [Homo
sapiens]
Length = 1804
Score = 32.0 bits (71), Expect = 0.52
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 15/116 (12%)
Query: 126 RPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILP-VNEGK 184
R + + + A H S K + E +K L EK + + P ++
Sbjct: 781 RDFLLAKVINAENAAHKSEKFRAMATRTRQEYLKDLAEK-NVTNTPIDPSGKFPFISLAS 839
Query: 185 KLKEKLKP-----------LIKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETK 229
K KEK KP ++ + +EDY + +E+ CL+ G E LI++ETK
Sbjct: 840 KKKEKSKPYPGAELSSMGAIVWAVRAEDYNKAMELDCLL--GISNEFIVLIEQETK 893
>gi|4758220 XAP-5 protein [Homo sapiens]
Length = 339
Score = 31.6 bits (70), Expect = 0.68
Identities = 27/113 (23%), Positives = 50/113 (44%), Gaps = 3/113 (2%)
Query: 98 KERHTQLEQMFRDIATI-VADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQAL- 155
+++ Q+EQM + IA + ++ + Y + E + + KQ+AL
Sbjct: 22 EKQREQMEQMKQRIAEENIMKSNIDKKFSAHYDAVEAELKSSTVGLVTLNDMKAKQEALV 81
Query: 156 -EVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQLE 207
E KQL +K + + M+L + K+ K K+ L +E E+ G + E
Sbjct: 82 KEREKQLAKKEQSKELQMKLEKLREKERKKEAKRKISSLSFTLEEEEEGGEEE 134
>gi|118498362 kinectin 1 isoform b [Homo sapiens]
Length = 1306
Score = 31.2 bits (69), Expect = 0.89
Identities = 42/217 (19%), Positives = 96/217 (44%), Gaps = 14/217 (6%)
Query: 45 KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQ--TEICKQILTKGEVQVSDKERHT 102
++ DE L+T + QVA KE+ ++A T++ T+ + + K QVS
Sbjct: 738 QEKDEKLKTVEELLETGLIQVATKEEELNAIRTENSSLTKEVQDLKAKQNDQVSFASLVE 797
Query: 103 QLEQM-------FRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQAL 155
+L+++ + + ++ + + K + I ++++ +K K + +
Sbjct: 798 ELKKVIHEKDGKIKSVEELLEAELLKVANKEKTVQLSITSKVQELQNLLK-GKEEQMNTM 856
Query: 156 EVIKQLKEKMKIERAHMRLRFILPVNEGKK--LKEKLKPLIKVIESEDYGQQLEIVCLID 213
+ + + KEK + L+ + NE K ++E + +K S ++LEIV
Sbjct: 857 KAVLEEKEK-DLANTGKWLQDLQEENESLKAHVQEVAQHNLKEASSASQFEELEIVLKEK 915
Query: 214 PGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKFE 250
+ ++ ++K+ S L L+DV++ ++ F+
Sbjct: 916 ENELKRLEAMLKERESDLSSKTQL-LQDVQDENKLFK 951
>gi|116089337 IQ motif containing GTPase activating protein 2 [Homo
sapiens]
Length = 1575
Score = 31.2 bits (69), Expect = 0.89
Identities = 20/96 (20%), Positives = 46/96 (47%), Gaps = 2/96 (2%)
Query: 25 KRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLIS-AFGTDDQTEI 83
++F + Y + V + + ++E++ THS+ + +K DL+S G+ +
Sbjct: 1190 EKFNMDKYTDLVTVSKPVIYISIEEIISTHSLLLEHQDAIAPEKNDLLSELLGSLGEVPT 1249
Query: 84 CKQILTKGEVQVSDKERHTQLEQMFR-DIATIVADK 118
+ L +G V +D + L Q+ + +I+ ++ K
Sbjct: 1250 VESFLGEGAVDPNDPNKANTLSQLSKTEISLVLTSK 1285
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
T ++ ++ T+ ++ QLE+ +++ + + + ++K T+ +E
Sbjct: 1763 TQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLHEMEGAVKSKFKSTIAALEAK 1822
Query: 137 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLK 191
+ + V+ KQ A + +KQ +K+K +L V + +K+ E+ K
Sbjct: 1823 IAQLEEQVEQEAREKQAATKSLKQKDKKLK--------EILLQVEDERKMAEQYK 1869
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
T ++ ++ T+ ++ QLE+ +++ + + + ++K T+ +E
Sbjct: 1770 TQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLHEMEGAVKSKFKSTIAALEAK 1829
Query: 137 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLK 191
+ + V+ KQ A + +KQ +K+K +L V + +K+ E+ K
Sbjct: 1830 IAQLEEQVEQEAREKQAATKSLKQKDKKLK--------EILLQVEDERKMAEQYK 1876
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
T ++ ++ T+ ++ QLE+ +++ + + + ++K T+ +E
Sbjct: 1770 TQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLHEMEGAVKSKFKSTIAALEAK 1829
Query: 137 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLK 191
+ + V+ KQ A + +KQ +K+K +L V + +K+ E+ K
Sbjct: 1830 IAQLEEQVEQEAREKQAATKSLKQKDKKLK--------EILLQVEDERKMAEQYK 1876
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 30.8 bits (68), Expect = 1.2
Identities = 21/115 (18%), Positives = 51/115 (44%), Gaps = 8/115 (6%)
Query: 77 TDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERA 136
T ++ ++ T+ ++ QLE+ +++ + + + ++K T+ +E
Sbjct: 1763 TQQAEQLSNELATERSTAQKNESARQQLERQNKELRSKLHEMEGAVKSKFKSTIAALEAK 1822
Query: 137 MKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLK 191
+ + V+ KQ A + +KQ +K+K +L V + +K+ E+ K
Sbjct: 1823 IAQLEEQVEQEAREKQAATKSLKQKDKKLK--------EILLQVEDERKMAEQYK 1869
>gi|24308179 CTTNBP2 N-terminal like [Homo sapiens]
Length = 639
Score = 30.8 bits (68), Expect = 1.2
Identities = 22/112 (19%), Positives = 49/112 (43%), Gaps = 3/112 (2%)
Query: 97 DKERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALE 156
++ RH QL M +K K + +E+ + + + +++ L+
Sbjct: 171 ERSRHKQLSSMLVLECKKATNKAAEEGQKAGELSLKLEKEKSRVSKLEEELAAERKRGLQ 230
Query: 157 VIKQLKEKMK---IERAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQ 205
Q+++++ IER +R + N K LKE+++ L K+++ + Q
Sbjct: 231 TEAQVEKQLSEFDIEREQLRAKLNREENRTKTLKEEMESLKKIVKDLEASHQ 282
>gi|87299628 biorientation of chromosomes in cell division 1-like
[Homo sapiens]
Length = 3051
Score = 30.0 bits (66), Expect = 2.0
Identities = 25/121 (20%), Positives = 56/121 (46%), Gaps = 12/121 (9%)
Query: 135 RAMKDIHYSVKTNKSTKQ--QALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKP 192
+ +K +H + +K ++ ++L V+ + K + K+ER H R + EG + + +
Sbjct: 616 KELKHVHAKSEPSKPARRLSESLHVVDENKNESKLEREHKRRTSTPVIMEGVQEETDTRD 675
Query: 193 LIKVIESEDYGQQLEIVCLIDPGCFREI---DELIKKETKGKGSLEVLNLKDVEEGDEKF 249
+ + +E + +C +P + ++ +KK+ L+ L K+V+ EK
Sbjct: 676 VKRQVERSE-------ICTEEPQKQKSTLKNEKHLKKDDSETPHLKSLLKKEVKSSKEKP 728
Query: 250 E 250
E
Sbjct: 729 E 729
>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
transmembrane signal), 1 [Homo sapiens]
Length = 3259
Score = 30.0 bits (66), Expect = 2.0
Identities = 28/173 (16%), Positives = 85/173 (49%), Gaps = 14/173 (8%)
Query: 33 KNKVVGWRSGVEKDLDEVL--QTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQILTK 90
K+ V+G + ++++ D+++ S+ N S + L T+D+ ++ K+I +
Sbjct: 1534 KDTVLGRLALLQEERDKLITEMDRSLLENQSLSSSCESLKLALEGLTEDKEKLVKEIESL 1593
Query: 91 GEVQVSD----KERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKT 146
++++ +E+H +L++ + +I + N + + V + + ++++ +++
Sbjct: 1594 KSSKIAESTEWQEKHKELQKEY-EILLQSYENVSNEAERIQHVVEAVRQEKQELYGKLRS 1652
Query: 147 NKSTK-------QQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKP 192
++ K Q+A + ++++KEKM+ + + + E +L+ ++ P
Sbjct: 1653 TEANKKETEKQLQEAEQEMEEMKEKMRKFAKSKQQKILELEEENDRLRAEVHP 1705
>gi|4503509 eukaryotic translation initiation factor 3, subunit 10
theta, 150/170kDa [Homo sapiens]
Length = 1382
Score = 29.6 bits (65), Expect = 2.6
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Query: 151 KQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIESEDYGQQLEIVC 210
+++ LE + +EK ++E+ L+ + E E+L+ K E E Q+ E
Sbjct: 578 RKERLESLNIQREKEELEQREAELQKVRKAEE-----ERLRQEAKEREKERILQEHE--- 629
Query: 211 LIDPGCFREIDELIKKETKGKGSLEVLNLKDVEEGDEKF 249
I RE E IKK G + + ++++D+EE D F
Sbjct: 630 QIKKKTVRERLEQIKKTELGAKAFKDIDIEDLEELDPDF 668
>gi|219555661 intraflagellar transport 81-like isoform 1 [Homo
sapiens]
Length = 676
Score = 29.6 bits (65), Expect = 2.6
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 98 KERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEV 157
+ ++LEQ R + ++C+ E++ YT +I+ + V+ ++T + +
Sbjct: 540 ESNRSKLEQEVRRLR----EECLQEESRYHYTNCMIK------NLEVQLRRATDEMKAYI 589
Query: 158 IKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLK 191
+EK K R N GKKL+EK K
Sbjct: 590 SSDQQEKRKAIREQYTKNTAEQENLGKKLREKQK 623
>gi|32526901 intraflagellar transport 81-like isoform 1 [Homo
sapiens]
Length = 676
Score = 29.6 bits (65), Expect = 2.6
Identities = 23/94 (24%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 98 KERHTQLEQMFRDIATIVADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEV 157
+ ++LEQ R + ++C+ E++ YT +I+ + V+ ++T + +
Sbjct: 540 ESNRSKLEQEVRRLR----EECLQEESRYHYTNCMIK------NLEVQLRRATDEMKAYI 589
Query: 158 IKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLK 191
+EK K R N GKKL+EK K
Sbjct: 590 SSDQQEKRKAIREQYTKNTAEQENLGKKLREKQK 623
>gi|224586823 coiled-coil domain containing 110 isoform b [Homo
sapiens]
Length = 796
Score = 29.6 bits (65), Expect = 2.6
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 27/126 (21%)
Query: 145 KTNKSTKQQALEVI---KQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIES-- 199
K N T+Q ++ LKE ++I++ M L +E LK K+KPLI +S
Sbjct: 379 KVNSVTEQCVAKIQYLQNYLKESVQIQKKVMELE-----SENLNLKSKMKPLIFTTQSLI 433
Query: 200 ---EDYGQQLEIVC--------------LIDPGCFREIDELIKKETKGKGSLEVLNLKDV 242
E Y +QL+ + C +E ++I K +G + L K++
Sbjct: 434 QKVETYEKQLKNLVEEKSTIQSKLSKTEEYSKECLKEFKKIISKYNVLQGQNKTLEEKNI 493
Query: 243 EEGDEK 248
+ EK
Sbjct: 494 QLSLEK 499
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 26/104 (25%)
Query: 151 KQQALEVIKQLKEK-----------------MKIERAHMRLRFILPVNEGKKLKEKLKPL 193
KQQ +E + QLK K M IE M+ +L +E + L++K L
Sbjct: 499 KQQMMEALDQLKSKEHKTQSDMAIVNNENNRMSIEMEAMKTNILLIQDEKEMLEKKTHQL 558
Query: 194 IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVL 237
+K E G +L+ L EI +L +KE K E L
Sbjct: 559 LK--EKSSLGNELKESQL-------EIIQLKEKERLAKTEQETL 593
>gi|22749515 coiled-coil domain containing 110 isoform a [Homo
sapiens]
Length = 833
Score = 29.6 bits (65), Expect = 2.6
Identities = 32/126 (25%), Positives = 53/126 (42%), Gaps = 27/126 (21%)
Query: 145 KTNKSTKQQALEVI---KQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIES-- 199
K N T+Q ++ LKE ++I++ M L +E LK K+KPLI +S
Sbjct: 416 KVNSVTEQCVAKIQYLQNYLKESVQIQKKVMELE-----SENLNLKSKMKPLIFTTQSLI 470
Query: 200 ---EDYGQQLEIVC--------------LIDPGCFREIDELIKKETKGKGSLEVLNLKDV 242
E Y +QL+ + C +E ++I K +G + L K++
Sbjct: 471 QKVETYEKQLKNLVEEKSTIQSKLSKTEEYSKECLKEFKKIISKYNVLQGQNKTLEEKNI 530
Query: 243 EEGDEK 248
+ EK
Sbjct: 531 QLSLEK 536
Score = 28.5 bits (62), Expect = 5.8
Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 26/104 (25%)
Query: 151 KQQALEVIKQLKEK-----------------MKIERAHMRLRFILPVNEGKKLKEKLKPL 193
KQQ +E + QLK K M IE M+ +L +E + L++K L
Sbjct: 536 KQQMMEALDQLKSKEHKTQSDMAIVNNENNRMSIEMEAMKTNILLIQDEKEMLEKKTHQL 595
Query: 194 IKVIESEDYGQQLEIVCLIDPGCFREIDELIKKETKGKGSLEVL 237
+K E G +L+ L EI +L +KE K E L
Sbjct: 596 LK--EKSSLGNELKESQL-------EIIQLKEKERLAKTEQETL 630
>gi|41393610 Ras association (RalGDS/AF-6) domain family 6 isoform b
[Homo sapiens]
Length = 369
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 145 KTNKSTKQQALEVIKQLKEKMKIERA--HMRLRFILPVNEGKKLKEKLKPLIK 195
K ++ + EVIKQL +K KIE + L I E ++LK+ PL++
Sbjct: 234 KVRVNSNMRTEEVIKQLLQKFKIENSPQDFALHIIFATGEQRRLKKTDIPLLQ 286
>gi|29789443 Ras association (RalGDS/AF-6) domain family 6 isoform a
[Homo sapiens]
Length = 337
Score = 29.6 bits (65), Expect = 2.6
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 145 KTNKSTKQQALEVIKQLKEKMKIERA--HMRLRFILPVNEGKKLKEKLKPLIK 195
K ++ + EVIKQL +K KIE + L I E ++LK+ PL++
Sbjct: 202 KVRVNSNMRTEEVIKQLLQKFKIENSPQDFALHIIFATGEQRRLKKTDIPLLQ 254
>gi|4885583 Rho-associated, coiled-coil containing protein kinase 1
[Homo sapiens]
Length = 1354
Score = 29.3 bits (64), Expect = 3.4
Identities = 36/195 (18%), Positives = 87/195 (44%), Gaps = 21/195 (10%)
Query: 27 FEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICKQ 86
FE+A + G G ++L + L+ F + K QV + ++ I ++ +I ++
Sbjct: 823 FELAQLTKQYRG-NEGQMRELQDQLEAEQYFSTLYKTQVKELKEEIEEKNRENLKKI-QE 880
Query: 87 ILTKGEV---QVSDKERHTQLEQMFRDI-----------ATIVADKCVNPETKRPYTVIL 132
+ + E Q+ E + EQ+ R + + A + T + +TV
Sbjct: 881 LQNEKETLATQLDLAETKAESEQLARGLLEEQYFELTQESKKAASRNRQEITDKDHTVSR 940
Query: 133 IERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIER----AHMRLRFILPVNEGKKLK- 187
+E A + ++ + ++ E +K+ +E+ K+E+ ++++ F +N + LK
Sbjct: 941 LEEANSMLTKDIEILRRENEELTEKMKKAEEEYKLEKEEEISNLKAAFEKNINTERTLKT 1000
Query: 188 EKLKPLIKVIESEDY 202
+ + L +++ +D+
Sbjct: 1001 QAVNKLAEIMNRKDF 1015
>gi|6912396 glyoxylate reductase/hydroxypyruvate reductase [Homo
sapiens]
Length = 328
Score = 29.3 bits (64), Expect = 3.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 45 KDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGT 77
KD + ++ +VF+N+S+G V ++DL A +
Sbjct: 228 KDFFQKMKETAVFINISRGDVVNQDDLYQALAS 260
>gi|31982906 cingulin-like 1 [Homo sapiens]
Length = 1302
Score = 29.3 bits (64), Expect = 3.4
Identities = 22/137 (16%), Positives = 67/137 (48%), Gaps = 6/137 (4%)
Query: 33 KNKVVGWRSGVEKDLDEVLQTHSVFVNVSKGQVAKKEDLISAFGTDDQTEICK-QILTKG 91
KN++ R + K ++++ + + V S+ + ++ + + ++ E+ + Q K
Sbjct: 936 KNEMENERWHLGKTIEKLQKEMADIVEASRTSTLELQNQLDEYKEKNRRELAEMQRQLKE 995
Query: 92 EVQVSDKERHTQLEQMFRDIATIVADKCVNPETKRPYTVI---LIERAMKDIHYSVKTNK 148
+ ++K R T ++ +D ++ ++ + + + + L+E+ +KD+ Y ++
Sbjct: 996 KTLEAEKSRLTAMKM--QDEMRLMEEELRDYQRAQDEALTKRQLLEQTLKDLEYELEAKS 1053
Query: 149 STKQQALEVIKQLKEKM 165
K ++KQ+++K+
Sbjct: 1054 HLKDDRSRLVKQMEDKV 1070
>gi|16306568 poly(A) polymerase gamma [Homo sapiens]
Length = 736
Score = 29.3 bits (64), Expect = 3.4
Identities = 20/78 (25%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 139 DIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVNEGKKLKEKLKPLIKVIE 198
D+ Y +++ T + I LKE MKIE H++ + + + L++K K + +
Sbjct: 454 DLTYDIQSFTDTVYRQANNINMLKEGMKIEATHVKKKQLHHYLPAEILQKKKKQSLSDVN 513
Query: 199 SEDYGQQLEIVCLIDPGC 216
G Q + + L D C
Sbjct: 514 RSSGGLQSKRLSL-DSSC 530
>gi|64085252 hypothetical protein LOC145508 [Homo sapiens]
Length = 1094
Score = 29.3 bits (64), Expect = 3.4
Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 33/207 (15%)
Query: 67 KKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN-PETK 125
KK+ I + ++ + ++I + Q DK + ++++ +D++ I AD E +
Sbjct: 596 KKQSKIQSQMKVEKAHLEEEIAELKKSQAQDKAKLLEMQESIKDLSAIRADLANKLAEEE 655
Query: 126 RPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMR-----LRFILPV 180
R +L KD+ KS ++ +I QLK + + + ++ L+ +
Sbjct: 656 RAKKAVL-----KDLSDLTAQAKSRDEETATIITQLKLERDVHQRELKDLTSSLQSVKTK 710
Query: 181 NEG---------KKLKEKLKPLIKVIESEDYGQ---------QLEIVCLIDPGCFREIDE 222
+E KK K + + I+ +++E + QLE + C R +E
Sbjct: 711 HEQNIQELMKHFKKEKSEAENHIRTLKAESLEEKNMAKIHRGQLE---KLKSQCDRLTEE 767
Query: 223 LIKKETKGKG-SLEVLNLKDVEEGDEK 248
L + E + K L+ LKD E EK
Sbjct: 768 LTQNENENKKLKLKYQCLKDQLEEREK 794
>gi|22538387 A-kinase anchor protein 9 isoform 2 [Homo sapiens]
Length = 3907
Score = 28.9 bits (63), Expect = 4.4
Identities = 29/140 (20%), Positives = 65/140 (46%), Gaps = 6/140 (4%)
Query: 59 NVSKGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDK---ERHTQLEQMFRDIATIV 115
N +K ++ +KE +I T E K + K ++ +DK E Q+ Q ++I +
Sbjct: 318 NSNKEEIQEKETIIEELNTKIIEEEKKTLELKDKLTTADKLLGELQEQIVQKNQEIKNMK 377
Query: 116 ADKCVNPETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLR 175
+ N + K + I++ M + K N Q ++++++++ + +R +LR
Sbjct: 378 LE-LTNSKQKERQSSEEIKQLMGTVEELQKRNHKDSQFETDIVQRMEQ--ETQRKLEQLR 434
Query: 176 FILPVNEGKKLKEKLKPLIK 195
L G+++ + + LI+
Sbjct: 435 AELDEMYGQQIVQMKQELIR 454
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.134 0.370
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,620,531
Number of Sequences: 37866
Number of extensions: 364773
Number of successful extensions: 1364
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1335
Number of HSP's gapped (non-prelim): 85
length of query: 250
length of database: 18,247,518
effective HSP length: 100
effective length of query: 150
effective length of database: 14,460,918
effective search space: 2169137700
effective search space used: 2169137700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.