SND1 36246

Name: SND1	Sequence: fasta or formatted (910aa)		NCBI GI: 77404397
Description: staphylococcal nuclease domain containing 1		Referenced in: Additional Interaction Domain Families Non-Receptor Tyrosine Kinase Pathways
Composition: Amino acid Percentage Count Longest homopolymer A alanine 9.1 83 3 C cysteine 1.3 12 1 D aspartate 4.9 45 3 E glutamate 8.9 81 2 F phenylalanine 3.7 34 2 G glycine 6.4 58 2 H histidine 2.2 20 2 I isoleucine 5.2 47 2 K lysine 6.4 58 2 L leucine 8.5 77 3 M methionine 1.4 13 1 N asparagine 3.7 34 2 P proline 4.9 45 3 Q glutamine 4.0 36 1 R arginine 7.1 65 2 S serine 5.8 53 2 T threonine 4.8 44 1 V valine 7.6 69 2 W tryptophan 0.9 8 1 Y tyrosine 3.1 28 2			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 staphylococcal nuclease domain containing 1 TDRD1 0.018 tudor domain containing 1 RNF17 0.017 ring finger protein 17 TDRD6 0.016 tudor domain containing 6 TDRKH 0.013 tudor and KH domain containing isoform a TDRKH 0.013 tudor and KH domain containing isoform b TDRKH 0.013 tudor and KH domain containing isoform a TDRKH 0.013 tudor and KH domain containing isoform a LOC100129278 0.013 PREDICTED: similar to tudor domain containing 1 [Ho... LOC100129278 0.013 PREDICTED: similar to tudor domain containing 1 [Ho... LOC100129278 0.013 PREDICTED: similar to tudor domain containing 1 [Ho... TDRD7 0.012 tudor domain containing 7 TDRD5 0.011 tudor domain containing 5 AKAP1 0.009 A-kinase anchor protein 1 precursor STK31 0.008 serine/threonine kinase 31 isoform b STK31 0.008 serine/threonine kinase 31 isoform a STK31 0.008 serine/threonine kinase 31 isoform b TDRD9 0.006 tudor domain containing 9 SBDS 0.006 Shwachman-Bodian-Diamond syndrome protein CDH23 0.004 cadherin-like 23 isoform 1 precursor WNK4 0.004 WNK lysine deficient protein kinase 4 RP1 0.004 retinitis pigmentosa RP1 protein KIF15 0.003 kinesin family member 15 C10orf18 0.003 hypothetical protein LOC54906 TOP2B 0.003 DNA topoisomerase II, beta isozyme CCNB3 0.003 cyclin B3 isoform 3 CNTNAP4 0.003 cell recognition protein CASPR4 isoform 2 CNTNAP4 0.003 cell recognition protein CASPR4 isoform 1 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.