Guide to the Human Genome
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Name: SBDS Sequence: fasta or formatted (250aa) NCBI GI: 28416940
Description:

Shwachman-Bodian-Diamond syndrome protein

Referenced in:

Nucleus and Nucleolus

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.0         10           1
 C cysteine            2.0          5           1
 D aspartate           5.6         14           2
 E glutamate          10.4         26           2
 F phenylalanine       3.2          8           1
 G glycine             4.8         12           1
 H histidine           1.6          4           1
 I isoleucine          8.0         20           1
 K lysine             13.2         33           2
 L leucine             8.0         20           1
 M methionine          2.4          6           1
 N asparagine          3.2          8           1
 P proline             2.4          6           1
 Q glutamine           5.2         13           2
 R arginine            5.2         13           1
 S serine              4.0         10           1
 T threonine           5.6         14           1
 V valine              9.2         23           2
 W tryptophan          0.4          1           1
 Y tyrosine            1.6          4           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Shwachman-Bodian-Diamond syndrome protein 
GOLGA4                0.028   golgi autoantigen, golgin subfamily a, 4 
SND1                  0.021   staphylococcal nuclease domain containing 1 
CEP55                 0.017   centrosomal protein 55kDa 
CEP55                 0.017   centrosomal protein 55kDa 
GBP3                  0.017   guanylate binding protein 3 
SIPA1L1               0.015   signal-induced proliferation-associated 1 like 1 [Hom...
FAM50A                0.015   XAP-5 protein 
KTN1                  0.013   kinectin 1 isoform b 
IQGAP2                0.013   IQ motif containing GTPase activating protein 2 [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM1B [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM2B [Ho...
MYH11                 0.013   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
CTTNBP2NL             0.013   CTTNBP2 N-terminal like 
BOD1L                 0.011   biorientation of chromosomes in cell division 1-like...
GOLGB1                0.011   golgi autoantigen, golgin subfamily b, macrogolgin ...
EIF3A                 0.011   eukaryotic translation initiation factor 3, subunit 1...
IFT81                 0.011   intraflagellar transport 81-like isoform 1 
IFT81                 0.011   intraflagellar transport 81-like isoform 1 
CCDC110               0.011   coiled-coil domain containing 110 isoform b 
CCDC110               0.011   coiled-coil domain containing 110 isoform a 
RASSF6                0.011   Ras association (RalGDS/AF-6) domain family 6 isofor...
RASSF6                0.011   Ras association (RalGDS/AF-6) domain family 6 isofor...
ROCK1                 0.009   Rho-associated, coiled-coil containing protein kinase...
GRHPR                 0.009   glyoxylate reductase/hydroxypyruvate reductase 
CGNL1                 0.009   cingulin-like 1 
PAPOLG                0.009   poly(A) polymerase gamma 
C14orf145             0.009   hypothetical protein LOC145508 
AKAP9                 0.009   A-kinase anchor protein 9 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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