Guide to the Human Genome
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Name: FAM50A Sequence: fasta or formatted (339aa) NCBI GI: 4758220
Description:

XAP-5 protein

Referenced in:

Additional Conserved Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.5         22           2
 C cysteine            0.0          0           0
 D aspartate           5.3         18           2
 E glutamate          15.9         54           5
 F phenylalanine       3.2         11           1
 G glycine             3.8         13           2
 H histidine           2.7          9           3
 I isoleucine          4.4         15           2
 K lysine             13.0         44           2
 L leucine             7.4         25           2
 M methionine          3.8         13           1
 N asparagine          2.4          8           1
 P proline             2.1          7           1
 Q glutamine           4.4         15           2
 R arginine            7.4         25           2
 S serine              6.2         21           2
 T threonine           3.5         12           2
 V valine              3.8         13           2
 W tryptophan          1.5          5           1
 Y tyrosine            2.7          9           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   XAP-5 protein 
FAM50B                0.760   family with sequence similarity 50, member B 
WDR87                 0.060   NYD-SP11 protein 
LOC283685             0.059   PREDICTED: golgi autoantigen, golgin subfamily a-li...
LOC400352             0.057   PREDICTED: similar to Putative golgin subfamily A m...
LOC100132816          0.057   PREDICTED: similar to Putative golgin subfamily A m...
LOC283685             0.054   PREDICTED: golgi autoantigen, golgin subfamily a-li...
INCENP                0.054   inner centromere protein antigens 135/155kDa isofor...
LOC645202             0.054   PREDICTED: hypothetical protein LOC645202 
MYO6                  0.052   myosin VI 
LOC100133599          0.051   PREDICTED: hypothetical protein 
INCENP                0.051   inner centromere protein antigens 135/155kDa isofor...
LOC727832             0.051   golgi autoantigen, golgin subfamily a-like 
LOC440243             0.051   PREDICTED: Putative golgin subfamily A member 6-lik...
TCHH                  0.051   trichohyalin 
BAT2D1                0.051   HBxAg transactivated protein 2 
LOC100286959          0.048   PREDICTED: hypothetical protein XP_002343921 
LOC100294088          0.048   PREDICTED: hypothetical protein, partial 
LOC100133758          0.048   PREDICTED: hypothetical protein, partial 
RBM25                 0.046   RNA binding motif protein 25 
CALD1                 0.046   caldesmon 1 isoform 1 
MAP7D2                0.046   MAP7 domain containing 2 
LOC283767             0.045   golgi autoantigen, golgin subfamily a-like 
CALD1                 0.045   caldesmon 1 isoform 5 
CALD1                 0.045   caldesmon 1 isoform 2 
CDC2L2                0.045   cell division cycle 2-like 2 isoform 4 
CDC2L2                0.045   cell division cycle 2-like 2 isoform 1 
CDC2L1                0.045   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.045   cell division cycle 2-like 1 (PITSLRE proteins) isof...
CDC2L1                0.045   cell division cycle 2-like 1 (PITSLRE proteins) isof...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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