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Search of human proteins with 27436910
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27436910 partner and localizer of BRCA2 [Homo sapiens]
(1186 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27436910 partner and localizer of BRCA2 [Homo sapiens] 2388 0.0
gi|7662018 PHD finger protein 3 [Homo sapiens] 43 0.002
gi|62241003 cardiomyopathy associated 5 [Homo sapiens] 42 0.003
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 40 0.010
gi|51988900 XPG-complementing protein [Homo sapiens] 40 0.017
gi|215982794 myosin VA isoform 2 [Homo sapiens] 40 0.017
gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens] 39 0.038
gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens] 39 0.038
gi|38373693 Sp3 transcription factor isoform 1 [Homo sapiens] 39 0.038
gi|215982791 myosin VA isoform 1 [Homo sapiens] 38 0.050
gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens] 38 0.066
gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens] 38 0.066
gi|82830424 gon-4-like isoform a [Homo sapiens] 37 0.086
gi|239740773 PREDICTED: similar to diffuse panbronchiolitis crit... 37 0.11
gi|197276602 microtubule-associated protein 4 isoform 5 [Homo sa... 37 0.11
gi|47519675 microtubule-associated protein 4 isoform 2 [Homo sap... 37 0.11
gi|104526627 triadin [Homo sapiens] 37 0.11
gi|109255230 centrosomal protein 170kDa isoform beta [Homo sapiens] 37 0.15
gi|109255228 centrosomal protein 170kDa isoform alpha [Homo sapi... 37 0.15
gi|238624188 diffuse panbronchiolitis critical region 1 protein ... 36 0.19
gi|124244056 family with sequence similarity 123B [Homo sapiens] 36 0.19
gi|91982772 mucin 17 [Homo sapiens] 36 0.19
gi|154350236 hypothetical protein LOC56204 [Homo sapiens] 36 0.19
gi|38044112 restin isoform b [Homo sapiens] 36 0.25
gi|4506751 restin isoform a [Homo sapiens] 36 0.25
gi|213385278 TNF receptor-associated factor 3 interacting protei... 36 0.25
gi|21040326 SON DNA-binding protein isoform F [Homo sapiens] 36 0.25
gi|21040314 SON DNA-binding protein isoform B [Homo sapiens] 36 0.25
gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens] 36 0.25
gi|23199987 WD repeat domain 5B [Homo sapiens] 36 0.25
>gi|27436910 partner and localizer of BRCA2 [Homo sapiens]
Length = 1186
Score = 2388 bits (6190), Expect = 0.0
Identities = 1186/1186 (100%), Positives = 1186/1186 (100%)
Query: 1 MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQ 60
MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQ
Sbjct: 1 MDEPPGKPLSCEEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQ 60
Query: 61 QDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQR 120
QDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQR
Sbjct: 61 QDLSPQLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQR 120
Query: 121 TDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE 180
TDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE
Sbjct: 121 TDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQE 180
Query: 181 EISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRP 240
EISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRP
Sbjct: 181 EISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRP 240
Query: 241 NFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVST 300
NFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVST
Sbjct: 241 NFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVST 300
Query: 301 DNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD 360
DNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD
Sbjct: 301 DNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD 360
Query: 361 TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQ 420
TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQ
Sbjct: 361 TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQ 420
Query: 421 RKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQK 480
RKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQK
Sbjct: 421 RKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSRTSQK 480
Query: 481 LLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVN 540
LLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVN
Sbjct: 481 LLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVN 540
Query: 541 RSKEEVTSHKYQHEKLFIQVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL 600
RSKEEVTSHKYQHEKLFIQVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL
Sbjct: 541 RSKEEVTSHKYQHEKLFIQVKGKKSRHQKEDSLSWSNSAYLSLDDDAFTAPFHRDGMLSL 600
Query: 601 KQLLSFLSITDFQLPDEDFGPLKLEKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELS 660
KQLLSFLSITDFQLPDEDFGPLKLEKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELS
Sbjct: 601 KQLLSFLSITDFQLPDEDFGPLKLEKVKSCSEKPVEPFESKMFGERHLKEGSCIFPEELS 660
Query: 661 PKRMDTEMEDLEEDLIVLPGKSHPKRPNSQSQHTKTGLSSSILLYTPLNTVAPDDNDRPT 720
PKRMDTEMEDLEEDLIVLPGKSHPKRPNSQSQHTKTGLSSSILLYTPLNTVAPDDNDRPT
Sbjct: 661 PKRMDTEMEDLEEDLIVLPGKSHPKRPNSQSQHTKTGLSSSILLYTPLNTVAPDDNDRPT 720
Query: 721 TDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSG 780
TDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSG
Sbjct: 721 TDMCSPAFPILGTTPAFGPQGSYEKASTEVAGRTCCTPQLAHLKDSVCLASDTKQFDSSG 780
Query: 781 SPAKPHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTE 840
SPAKPHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTE
Sbjct: 781 SPAKPHTTLQVSGRQGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTE 840
Query: 841 TAELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA 900
TAELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA
Sbjct: 841 TAELPASDSINPGNLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVSLWKA 900
Query: 901 LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL 960
LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL
Sbjct: 901 LDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVL 960
Query: 961 LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 1020
LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ
Sbjct: 961 LKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQ 1020
Query: 1021 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 1080
GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK
Sbjct: 1021 GMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAK 1080
Query: 1081 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW 1140
ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW
Sbjct: 1081 ESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIW 1140
Query: 1141 DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 1186
DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS
Sbjct: 1141 DLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHYS 1186
>gi|7662018 PHD finger protein 3 [Homo sapiens]
Length = 2039
Score = 42.7 bits (99), Expect = 0.002
Identities = 73/384 (19%), Positives = 146/384 (38%), Gaps = 43/384 (11%)
Query: 31 TLARLQRAQRAEKIKHSIKKTVEEQDCLSQQDLSPQLKHSEPKNKICVYDKLHIKTHLDE 90
T+A+ A K + KTV +Q + S+ K ++C+ L + H +
Sbjct: 145 TIAKRSNAAPLSNTKKASGKTVSTAKAGVKQP-----ERSQVKEEVCM--SLKPEYHKEN 197
Query: 91 ETGEKTSITLDVGPE-SFNPGDGPGGLPIQRTDDTQEHFPHRVSDPSGEQKQKLPSRRKK 149
+ S ++V PE S + ++ D+ H+ ++P + +PS
Sbjct: 198 RRCSRNSGQIEVVPEVSVSSSHSSVSSCLEMKDEDGLDSKHKCNNPG---EIDVPSHELN 254
Query: 150 ------------QQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISSKNPARSPVTEIRT 197
++K + + + G+ + S K EQ + S + V E
Sbjct: 255 CSLLSETCVTIGEKKNEALMECKAKPVGSPLFKFSDKEEHEQNDSISGKTGETVVEE--- 311
Query: 198 HLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRPNFTRATTVPLQTLSDSG 257
+++ + DS E V +ED ++ + D PN T + V L + D
Sbjct: 312 -MIATRKVEQDSKETVKLSHEDDHILEDAGSSDISSDAACTNPNKTENSLVGLPSCVDEV 370
Query: 258 SSQHLEHIPPKGSSELTTHDLKNIRFTSPVSL--EAQGKKMTVSTDNLLVNKAISKSGQL 315
+ +LE G ++ T + L+ + P+ +A+ + ST+ N + +
Sbjct: 371 TECNLELKDTMGIADKTENTLERNKI-EPLGYCEDAESNRQLESTEFNKSNLEVVDTSTF 429
Query: 316 PTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSDTLDGRNENLQESEIL 375
SN+ N C + +QN K+ N E + +T + +++ +S +
Sbjct: 430 GPESNILENAICDV-----------PDQNSKQLNAIESTKIESHETANLQDDRNSQSSSV 478
Query: 376 S--QPKSLSLEATSPLSAEKHSCT 397
S + KS+ + T P+ K + T
Sbjct: 479 SYLESKSVKSKHTKPVIHSKQNMT 502
Score = 34.7 bits (78), Expect = 0.55
Identities = 41/157 (26%), Positives = 59/157 (37%), Gaps = 12/157 (7%)
Query: 191 PVTEIRTHLLSLKSELPDSPEPVTEIN---EDSVLIPPTAQPEKGVDTFLRRPNFTRATT 247
PV +I LL ++ D + V E N E L T + D +
Sbjct: 1465 PVDDILQSLLGTTGQVYDQAQSVMEQNTVKEIPFLNEQTNSKIEKTDNVEVTDGENKEIK 1524
Query: 248 VPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTDNLLVNK 307
V + +S+S GSS ++ L SL +GK VST+ L N
Sbjct: 1525 VKVDNISESTDKSAEIETSVVGSSSISAGSL--------TSLSLRGKPPDVSTEAFLTNL 1576
Query: 308 AISKSGQLPTSSNLEANISCSLNELTYNNLPANENQN 344
+I +S Q T + E + L E NNL N+ N
Sbjct: 1577 SI-QSKQEETVESKEKTLKRQLQEDQENNLQDNQTSN 1612
>gi|62241003 cardiomyopathy associated 5 [Homo sapiens]
Length = 4069
Score = 42.0 bits (97), Expect = 0.003
Identities = 153/703 (21%), Positives = 248/703 (35%), Gaps = 111/703 (15%)
Query: 48 IKKTVEEQDCLSQQDLSPQLKHSEPKNKICVYDKLHIKTHLDEETG----EKTSITLDVG 103
IKK +E + S Q++SP KH PK K DEET E ++ +
Sbjct: 1537 IKK--KETELPSSQNVSPASKHIIPKGK-------------DEETASSSPELENLASGLA 1581
Query: 104 PESFNPGDGPGGLPIQRTDDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCV 163
P D ++ + Q FP D + + P ++ K + +
Sbjct: 1582 PTLLLLSDDKNKPAVEVSSTAQGDFPSEKQDVALAELSLEPEKKDKPHQPLEL-PNAGSE 1640
Query: 164 FGTDSLRLSGKRLKEQEEISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLI 223
F +D R SG I +K A+SP+TE +L S E E E L
Sbjct: 1641 FSSDLGRQSG-------SIGTKQ-AKSPITETEDSVLEKGPAELRSREGKEENRE---LC 1689
Query: 224 PPTAQPEKGVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRF 283
+ P + L R P S S+ PP +E N
Sbjct: 1690 ASSTMPAISELSSLLREESQNEEIKPFSPKIISLESKE----PPASVAE-----GGNPEE 1740
Query: 284 TSPVSLEAQGKKMTVSTDNLLVNKAISKSGQLPTSSNLEANISCS-LNELTYNNLPANEN 342
P + +G VS + G LP + NL+A + L++L+ N +
Sbjct: 1741 FQPFTFSLKGLSEEVSHPADFKKGGNQEIGPLPPTGNLKAQVMGDILDKLSEETGHPNSS 1800
Query: 343 QNLKEQNQTEKSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGL 402
Q L Q+ TE S +PSD L E + + L +++ L S S +K + +
Sbjct: 1801 QVL--QSITEPSKIAPSDLL---VEQKKTEKALHSDQTVKLPDVSTSSEDKQDLGIKQFS 1855
Query: 403 LFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSE 462
L + ++S + E K + F KD + L Q E
Sbjct: 1856 LMRENLPLEQSKSFMTTKPADVKE--------TKMEEFFISPKDENWMLGKPENVASQHE 1907
Query: 463 IRMSGTCTGQPSSRTSQKLLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRK--SAC 520
R++G+ Q S +S +L ++ + ++ ++ + + + ++ SA
Sbjct: 1908 QRIAGSV--QLDSSSSNELRPGQLKAAVSSKDHTCEVRKQVLPHSAEESHLSSQEAVSAL 1965
Query: 521 TPASDHCEPLLPTSSLSIVNRSKEEVTSHKYQHEKLFIQVKGKKSRHQKE----DSLSWS 576
+S + T +LS + S EEV K E + + G R+ E SL S
Sbjct: 1966 DTSSGN------TETLSSKSYSSEEV---KLAEEPKSLVLAGNVERNIAEGKEIHSLMES 2016
Query: 577 NSAYLSLDDDAFTAPFHRDGMLSLKQLLSFLSITDFQLPDEDF-----GPLKLEKVKS-- 629
S L + + P D +K LP E F L +E+VKS
Sbjct: 2017 ESLLLEKANTELSWPSKEDSQEKIK------------LPPERFFQKPVSGLSVEQVKSET 2064
Query: 630 ------CSEKPVEPFESKMFGERHLKEGSCIFPEELSPKRMDTEMEDLEEDLI----VLP 679
+ P E E + E+ + FPEE + LEE + V+
Sbjct: 2065 ISSSVKTAHFPAEGVEPALGNEKEAHRSTPPFPEE----------KPLEESKMVQSKVID 2114
Query: 680 GKSHPKRPNSQSQ-HTKTGLSSSILLYTPLNTVAPDDNDRPTT 721
K+P+ + + T+ SSI P + +P+ P T
Sbjct: 2115 DADEGKKPSPEVKIPTQRKPISSIHAREPQSPESPEVTQNPPT 2157
Score = 32.7 bits (73), Expect = 2.1
Identities = 95/469 (20%), Positives = 177/469 (37%), Gaps = 84/469 (17%)
Query: 113 PGGLPIQRT---DDTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSL 169
P LP Q + ++T+ PH V S +P+ +K+Q+ ++ + + +
Sbjct: 1150 PAALPAQSSIVKEETKPASPHSVLPDS------VPAIKKEQEPTAALTLKA----ADEQM 1199
Query: 170 RLSGKRLKEQEEISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQP 229
LS +++++E + A + V++ + ++ + P+ PE + SVL +P
Sbjct: 1200 ALS--KVRKEEIVPDSQEATAHVSQDQ----KMEPQPPNVPESEMKY---SVLPDMVDEP 1250
Query: 230 EKGVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSL 289
+KGV +P T L+ S + + K S L L S V +
Sbjct: 1251 KKGV-----KPKLVLNVTSELEQRKLSKNEPEVI----KPYSPLKETSLSGPEALSAVKM 1301
Query: 290 EAQGKKMTVSTDNLL------VNKAISKSGQLPTSSNLEANI------SCSLNELTYNNL 337
E + +T +L V K + S L I S S + L
Sbjct: 1302 EMKHDSKITTTPIVLHSASSGVEKQVEHGPPALAFSALSEEIKKEIEPSSSTTTASVTKL 1361
Query: 338 PANENQNLKEQNQTEKSLKSPSD----TLDGRNE----------NLQESEILSQPKSLSL 383
+N + +KE+ T+ SL +P D T G+ E + E +L++ +++
Sbjct: 1362 DSNLTRAVKEEIPTDSSLITPVDRPVLTKVGKGELGSGLPPLVTSADEHSVLAEEDKVAI 1421
Query: 384 EATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVK--KKGFK 441
+ SP+ E E + S+S+ E + S ++ K K G
Sbjct: 1422 KGASPIETSSKHLAWSEA---EKEIKFDSLPSVSS-----IAEHSVLSEVEAKEVKAGLP 1473
Query: 442 NKNKDASKNLNLSNEE--TDQSEIRMSGTCTGQPSSRTSQKLLSLTKVSSPAGPTEDNDL 499
+S++ + S E D+ ++ S C + + +K SL S P + L
Sbjct: 1474 VIKTSSSQHSDKSEEARVEDKQDLLFSTVCDSERLVSSQKK--SLMSTSEVLEPEHELPL 1531
Query: 500 SRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVNRSKEEVTS 548
S K+K P+S + P +S I+ + K+E T+
Sbjct: 1532 SLWGEI---------KKKETELPSSQNVSP----ASKHIIPKGKDEETA 1567
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 40.4 bits (93), Expect = 0.010
Identities = 43/173 (24%), Positives = 71/173 (41%), Gaps = 22/173 (12%)
Query: 358 PSDTLDGRNENLQESEILSQPKSLSLEATSPLS--AEKHSCTVPEGLLFPAEYYVRTTRS 415
P L +++ + +S+ SQP+ LSL P ++ +PE FP E T
Sbjct: 482 PQLQLQSQSQPVLQSQPPSQPEDLSLAVLQPTPQVTQEQGHLLPERKDFPVESVKLT--- 538
Query: 416 MSNCQRKVAVEAVIQSHLDVKKK---------GFKNKNKDASKNLNLSNEETDQSEIRMS 466
+V VE V+ H + K K +NK + + S+ + S S
Sbjct: 539 ------EVPVEPVLTVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSS 592
Query: 467 G--TCTGQPSSRTSQKLLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRK 517
G + +G SSR+S S T SS + S ++ +++ GR + RK
Sbjct: 593 GSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRK 645
>gi|51988900 XPG-complementing protein [Homo sapiens]
Length = 1186
Score = 39.7 bits (91), Expect = 0.017
Identities = 106/538 (19%), Positives = 205/538 (38%), Gaps = 68/538 (12%)
Query: 176 LKEQEEISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVD- 234
L+E+E+ SS+ E +L+ E +P+ + +ED +PP + E D
Sbjct: 149 LQEEEKHSSEEEDEKEWQERMNQKQALQEEFFHNPQAIDIESEDFSSLPPEVKHEILTDM 208
Query: 235 -TFLRRPNFTRATTVPLQT-----------LSDSGSSQHLEHIPPKGSSELTTHDLKNIR 282
F +R T +P ++ L + +QH+EH+ + + + + H +
Sbjct: 209 KEFTKRRR-TLFEAMPEESDDFSQYQLKGLLKKNYLNQHIEHVQKEMNQQHSGHIRRQYE 267
Query: 283 FTSPVSLEAQGKKMTVSTDN---LLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPA 339
E + +++ VS D +L+ +K+ S +L ++ + P
Sbjct: 268 DEGGFLKEVESRRV-VSEDTSHYILIKGIQAKTVAEVDSESLPSSSKMHGMSFDVKSSPC 326
Query: 340 NENQNLKEQNQT----------EKSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSP- 388
+ + KE + T + +L S + +EN +++ + P ++ + SP
Sbjct: 327 EKLKTEKEPDATPPSPRTLLAMQAALLGSSSEEELESENRRQARGRNAPAAVDEGSISPR 386
Query: 389 -LSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKN-KD 446
LSA K + E + A V+T A E I S + +G K ++ K
Sbjct: 387 TLSAIKRALDDDEDVKVCAGDDVQT-------GGPGAEEMRINSSTENSDEGLKVRDGKG 439
Query: 447 ASKNLNLSNEETDQSEIRMSGTCTG-QPSSRTSQKLLSLTKVSSPAGPTEDNDLSRKAVA 505
L++ + +E ++ T G +P+ ++ +SL V + A P D + +
Sbjct: 440 IPFTATLASSSVNSAEEHVASTNEGREPTDSVPKEQMSLVHVGTEAFPISDESMIKDRKD 499
Query: 506 QAPGRRYTGKRKSACTPASDHCEPLLPTSSLSIVNRSKEEVTSHKYQHEKLFIQVKGKKS 565
+ P + A P + L P S + SK E + + + + K
Sbjct: 500 RLPLESAVVRHSDA--PGLPNGRELTPASPTCTNSVSKNETHAEVLEQQNELCPYESK-- 555
Query: 566 RHQKEDSLSWSNSAYLSLDDDAFTAPFHRD---GMLSLKQLLSFLSITDFQLPDEDFGPL 622
+S+ LS DD+ P G +SL++ S +S+ P E
Sbjct: 556 ----------FDSSLLSSDDETKCKPNSASEVIGPVSLQETSSIVSV-----PSEAVD-- 598
Query: 623 KLEKVKSCSEKPVEPFESKMFGERHLKEGS----CIFPEELSPKRMDTEMEDLEEDLI 676
+E V S + K E F + E+ E + P+ + P +D+E + + I
Sbjct: 599 NVENVVSFNAKEHENF-LETIQEQQTTESAGQDLISIPKAVEPMEIDSEESESDGSFI 655
>gi|215982794 myosin VA isoform 2 [Homo sapiens]
Length = 1828
Score = 39.7 bits (91), Expect = 0.017
Identities = 47/216 (21%), Positives = 90/216 (41%), Gaps = 20/216 (9%)
Query: 174 KRLKEQEEISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGV 233
K L E+ P + L S+ EL E V + V QP+
Sbjct: 1227 KALSEKSAPEVTAPGAPAYRVLMEQLTSVSEELDVRKEEVLILRSQLVSQKEAIQPKDDK 1286
Query: 234 DTFLRRPNFTRATTV--PLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEA 291
+T T +T + +Q + D G +I K ++ L L++ + + EA
Sbjct: 1287 NTM------TDSTILLEDVQKMKDKGEIAQA-YIGLKETNRLLESQLQSQKRSHENEAEA 1339
Query: 292 -QGKKMTVSTDNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQ 350
+G+ ++ +N + ++++ QLP + +EA++ + LT NL E L++Q++
Sbjct: 1340 LRGEIQSLKEENNRQQQLLAQNLQLPPEARIEASLQHEITRLTNENLDLME--QLEKQDK 1397
Query: 351 TEKSLKSP--------SDTLDGRNENLQESEILSQP 378
T + LK + G+ EN+ +I+ +P
Sbjct: 1398 TVRKLKKQLKVFAKKIGELEVGQMENISPGQIIDEP 1433
>gi|63029928 zinc finger protein 385B isoform 1 [Homo sapiens]
Length = 471
Score = 38.5 bits (88), Expect = 0.038
Identities = 61/279 (21%), Positives = 111/279 (39%), Gaps = 23/279 (8%)
Query: 174 KRLKEQEEISSKNPAR-SPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQ-PEK 231
KR+K+ + PA+ SP + T + LP T + + S+ I P P
Sbjct: 60 KRVKQLSDGQPPPPAQASPSSNSSTGSTCHTTTLPALVRTPTLMMQPSLDIKPFMSFPVD 119
Query: 232 GVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEA 291
PNF V ++ + IPPK ++ + ++ +RF S EA
Sbjct: 120 SSSAVGLFPNFNTMDPVQKAVINHTFGVS----IPPK-KKQVISCNVCQLRFNSDSQAEA 174
Query: 292 QGKKMTVSTDNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQT 351
K + ++ +K +P+ + +AN SCS+ +T NN ++++
Sbjct: 175 HYKGSKHAKKVKALDATKNKPKMVPSKDSAKANPSCSITPITGNN---------SDKSED 225
Query: 352 EKSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVR 411
+ LK+ S + +E+ L + + L + S K + P ++ E +
Sbjct: 226 KGKLKASSSSQPSSSES---GSFLLKSGTTPLPPGAATSPSKSTNGAPGTVVESEEEKAK 282
Query: 412 TTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKN 450
S C KVAV ++ S L+ G K+K ++N
Sbjct: 283 KLLYCSLC--KVAVNSL--SQLEAHNTGSKHKTMVEARN 317
>gi|62865633 Sp3 transcription factor isoform 2 [Homo sapiens]
Length = 713
Score = 38.5 bits (88), Expect = 0.038
Identities = 60/263 (22%), Positives = 106/263 (40%), Gaps = 39/263 (14%)
Query: 230 EKGVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSL 289
E DT L P + ++ +P+ T+ +G Q + S ++ + DL+ SPVS
Sbjct: 254 ETNTDTDLFVPT-SSSSQLPV-TIDSTGILQQNTNSLTTSSGQVHSSDLQGNYIQSPVSE 311
Query: 290 EAQGKKMTVSTDNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQN 349
E Q + + VST +V + Q PTS +A I + T + + A+ QN+ +Q
Sbjct: 312 ETQAQNIQVSTAQPVVQHLQLQESQQPTS---QAQIVQGITPQTIHGVQAS-GQNISQQA 367
Query: 350 QTEKSLK-------------SPSDTLDGRN---------ENLQESEILSQPKSLSLEATS 387
L+ +PS + + +NLQ +Q +L+ T
Sbjct: 368 LQNLQLQLNPGTFLIQAQTVTPSGQVTWQTFQVQGVQNLQNLQIQNTAAQQITLTPVQTL 427
Query: 388 PLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDA 447
L V G F + +T + N Q V V ++ + + + +N D+
Sbjct: 428 TLGQ------VAAGGAFTSTPVSLSTGQLPNLQT-VTVNSIDSAGIQLHP----GENADS 476
Query: 448 SKNLNLSNEETDQSEIRMSGTCT 470
++ + EE D E ++SG T
Sbjct: 477 PADIRIKEEEPDPEEWQLSGDST 499
>gi|38373693 Sp3 transcription factor isoform 1 [Homo sapiens]
Length = 781
Score = 38.5 bits (88), Expect = 0.038
Identities = 60/263 (22%), Positives = 106/263 (40%), Gaps = 39/263 (14%)
Query: 230 EKGVDTFLRRPNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSL 289
E DT L P + ++ +P+ T+ +G Q + S ++ + DL+ SPVS
Sbjct: 322 ETNTDTDLFVPT-SSSSQLPV-TIDSTGILQQNTNSLTTSSGQVHSSDLQGNYIQSPVSE 379
Query: 290 EAQGKKMTVSTDNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQN 349
E Q + + VST +V + Q PTS +A I + T + + A+ QN+ +Q
Sbjct: 380 ETQAQNIQVSTAQPVVQHLQLQESQQPTS---QAQIVQGITPQTIHGVQAS-GQNISQQA 435
Query: 350 QTEKSLK-------------SPSDTLDGRN---------ENLQESEILSQPKSLSLEATS 387
L+ +PS + + +NLQ +Q +L+ T
Sbjct: 436 LQNLQLQLNPGTFLIQAQTVTPSGQVTWQTFQVQGVQNLQNLQIQNTAAQQITLTPVQTL 495
Query: 388 PLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDA 447
L V G F + +T + N Q V V ++ + + + +N D+
Sbjct: 496 TLGQ------VAAGGAFTSTPVSLSTGQLPNLQT-VTVNSIDSAGIQLHP----GENADS 544
Query: 448 SKNLNLSNEETDQSEIRMSGTCT 470
++ + EE D E ++SG T
Sbjct: 545 PADIRIKEEEPDPEEWQLSGDST 567
>gi|215982791 myosin VA isoform 1 [Homo sapiens]
Length = 1855
Score = 38.1 bits (87), Expect = 0.050
Identities = 40/201 (19%), Positives = 89/201 (44%), Gaps = 14/201 (6%)
Query: 189 RSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKG--VDTFLRRPNFTRAT 246
+ V +R+ L+S K + + T + +L +KG ++ R++
Sbjct: 1263 KEEVLILRSQLVSQKEAIQPKDDKNTMTDSTILLEDVQKMKDKGEIAQAYIGLKETNRSS 1322
Query: 247 TVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEA-QGKKMTVSTDNLLV 305
+ L++ G L + K ++ L L++ + + EA +G+ ++ +N
Sbjct: 1323 ALDYHELNEDGELW-LVYEGLKQANRLLESQLQSQKRSHENEAEALRGEIQSLKEENNRQ 1381
Query: 306 NKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSP------- 358
+ ++++ QLP + +EA++ + LT NL E L++Q++T + LK
Sbjct: 1382 QQLLAQNLQLPPEARIEASLQHEITRLTNENLDLME--QLEKQDKTVRKLKKQLKVFAKK 1439
Query: 359 -SDTLDGRNENLQESEILSQP 378
+ G+ EN+ +I+ +P
Sbjct: 1440 IGELEVGQMENISPGQIIDEP 1460
>gi|164663780 zinc finger protein 385B isoform 3 [Homo sapiens]
Length = 369
Score = 37.7 bits (86), Expect = 0.066
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 265 IPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTDNLLVNKAISKSGQLPTSSNLEAN 324
IPPK ++ + ++ +RF S EA K + ++ +K +P+ + +AN
Sbjct: 47 IPPK-KKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKAN 105
Query: 325 ISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSDTLDGRNENLQESEILSQPKSLSLE 384
SCS+ +T NN ++++ + LK+ S + +E+ L + + L
Sbjct: 106 PSCSITPITGNN---------SDKSEDKGKLKASSSSQPSSSES---GSFLLKSGTTPLP 153
Query: 385 ATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKN 444
+ S K + P ++ E + S C KVAV ++ S L+ G K+K
Sbjct: 154 PGAATSPSKSTNGAPGTVVESEEEKAKKLLYCSLC--KVAVNSL--SQLEAHNTGSKHKT 209
Query: 445 KDASKN 450
++N
Sbjct: 210 MVEARN 215
>gi|164663778 zinc finger protein 385B isoform 2 [Homo sapiens]
Length = 395
Score = 37.7 bits (86), Expect = 0.066
Identities = 42/186 (22%), Positives = 80/186 (43%), Gaps = 17/186 (9%)
Query: 265 IPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTDNLLVNKAISKSGQLPTSSNLEAN 324
IPPK ++ + ++ +RF S EA K + ++ +K +P+ + +AN
Sbjct: 73 IPPK-KKQVISCNVCQLRFNSDSQAEAHYKGSKHAKKVKALDATKNKPKMVPSKDSAKAN 131
Query: 325 ISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSDTLDGRNENLQESEILSQPKSLSLE 384
SCS+ +T NN ++++ + LK+ S + +E+ L + + L
Sbjct: 132 PSCSITPITGNN---------SDKSEDKGKLKASSSSQPSSSES---GSFLLKSGTTPLP 179
Query: 385 ATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKN 444
+ S K + P ++ E + S C KVAV ++ S L+ G K+K
Sbjct: 180 PGAATSPSKSTNGAPGTVVESEEEKAKKLLYCSLC--KVAVNSL--SQLEAHNTGSKHKT 235
Query: 445 KDASKN 450
++N
Sbjct: 236 MVEARN 241
>gi|82830424 gon-4-like isoform a [Homo sapiens]
Length = 2240
Score = 37.4 bits (85), Expect = 0.086
Identities = 42/174 (24%), Positives = 70/174 (40%), Gaps = 20/174 (11%)
Query: 89 DEETGEKTSITLDVGPESFNPGDGPGGLPIQRTDDTQEHFPHRVSDPSGEQKQKLPSRRK 148
D + + S+ VGPE+ +GP + DD + +S S E +P ++
Sbjct: 1433 DSSSVDGQSVGTPVGPETGGEKNGPEEEEEEDFDDLTQDEEDEMSSASEESVLSVPELQE 1492
Query: 149 KQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISSKNPARSPVTEIRTHLLSLKSELPD 208
+K T+++ ER R+S + E EE +S+ P E ++S L
Sbjct: 1493 TMEKLTWLASER---------RMSQE--GESEEENSQEENSEPEEEEEEEAEGMES-LQK 1540
Query: 209 SPEPVTEINEDSVLIPPT-AQPEKGVDTFLRRPNFTRATTVPLQTLSDSGSSQH 261
E E DS PPT A PE P + T P +++ +G ++
Sbjct: 1541 EDEMTDEAVGDSAEKPPTFASPETA-------PEVETSRTPPGESIKAAGKGRN 1587
Score = 31.6 bits (70), Expect = 4.7
Identities = 32/148 (21%), Positives = 59/148 (39%), Gaps = 11/148 (7%)
Query: 125 QEHFPHRVSDPSGEQKQKLPSRRK------KQQKRTFISQERDCVFGTDSLRLSGKRLKE 178
+E PH+ P ++ +LP K +++ R R+ T + ++ R E
Sbjct: 898 EEIQPHQWKPPIEREEHRLPFWLKASLPSIQEELRHMADGAREVGNMTGTTEINSDRSLE 957
Query: 179 QEEISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLR 238
++ + + +R P+ + +L LK P SVL P QP +
Sbjct: 958 KDNLELGSESRYPLLLPKGVVLKLKPVATRFPRKAWRQKRSSVLKPLLIQPSPSL----- 1012
Query: 239 RPNFTRATTVPLQTLSDSGSSQHLEHIP 266
+P+F T T S++ S+ + IP
Sbjct: 1013 QPSFNPGKTPARSTHSEAPPSKMVLRIP 1040
>gi|239740773 PREDICTED: similar to diffuse panbronchiolitis critical
region 1 [Homo sapiens]
Length = 1400
Score = 37.0 bits (84), Expect = 0.11
Identities = 86/434 (19%), Positives = 151/434 (34%), Gaps = 56/434 (12%)
Query: 144 PSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISSKNPA----RSPVTEIRTHL 199
PS + R + E+ +F + + E+ S P R+P +T
Sbjct: 698 PSPAGPTENREMTANEKTTLFPAEPTENRERTANEKTTSSPAEPTENGQRTPFANEKT-- 755
Query: 200 LSLKSELPDSPEPVTEINEDSVLIP--PTAQPEKGVDT----FLRRPNFTRATTVPLQTL 253
S +E + E NE++ L P PT E+ + F P R T T
Sbjct: 756 TSSSAEPTEHGERTPLANENTTLSPAGPTENRERTANEKTTPFPAEPTENRERTANENTT 815
Query: 254 ------SDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTDNLLVNK 307
+++G L + S T + K F + + + + + L N+
Sbjct: 816 PSPAQPTENGDRTPLANEKTTPSLAEPTENGKRTPFANEKTTSSSAEPTEHAERTPLANE 875
Query: 308 AISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSDTLDGRNE 367
+ S PT N + NE T PA +N +E EK+ P++ + R
Sbjct: 876 NTTSSPAEPTE-----NRERTANEKT-TQFPAEPTEN-RESTANEKTTPFPAEPTENREW 928
Query: 368 NLQESEILSQPKSLSLEATSPLSAEKH--------SCTV-PEGLLFPAEYYVRTTRSMSN 418
E+ LS + E +PL +++ SC P+ + T S +
Sbjct: 929 TANENTTLSPAEPTEHEEMTPLMVDENLQAPFRQGSCAERPKDI-------CATVASTTG 981
Query: 419 CQRKVAVEAVIQSHLDVKKKGFKNKNKDASK----NLNLSNEETDQSEIRMSGTCTGQPS 474
+ A E + S + V + AS+ + + T IR S T +P
Sbjct: 982 SESSTASEIITSSTMSVSATASSTASSTASEITMSSAAIPVSSTAYETIRFS-TAVSEP- 1039
Query: 475 SRTSQKLLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTS 534
+ +L+L S+ A T N + V P T K+ CE + +
Sbjct: 1040 --VTASILALE--STLAFTTVSNTTTSSTVTSVPTTASTSGSKNTTA-----CEATMSET 1090
Query: 535 SLSIVNRSKEEVTS 548
+++ + S++ S
Sbjct: 1091 TIAAITASEDTTVS 1104
>gi|197276602 microtubule-associated protein 4 isoform 5 [Homo
sapiens]
Length = 817
Score = 37.0 bits (84), Expect = 0.11
Identities = 75/355 (21%), Positives = 133/355 (37%), Gaps = 48/355 (13%)
Query: 198 HLLSLKSELPDSPEPVTEINEDSVLIPP----TAQPEKGVDTFLRRPNFTRATTVPLQTL 253
H L K+EL DS + I+E V+ + + V+ VP++
Sbjct: 132 HSLKNKAELADSMKNEAGIDEGHVIGESESVHSGASKHSVEKVTELAKGHLLPGVPVEDQ 191
Query: 254 SDSGSSQHLEHIPPKGSSELTTHDLKNIRFTS--------PVSLEAQGKKMTVSTDNLL- 304
S G ++ LE +G+ H + + T P LE + +K++ D
Sbjct: 192 SLPGEARALEGYADRGN--FPAHPVNEEKETKEGSVAVQIPDLLEDKAQKLSFCEDQNAQ 249
Query: 305 ---------VNKAISKSGQLPTSSN---LEANISCSLNELTYNNLPANENQNLKEQNQTE 352
+NK + + P S N E +++C + EL +LP E Q+ ++ E
Sbjct: 250 DRNSKGSDSLNKKVDLTLLSPKSENDKLKEISLACKITELESVSLPTPEIQSDFLHSKVE 309
Query: 353 KSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEG-------LLFP 405
+DTL + + L +PK LE ++ + S T EG + P
Sbjct: 310 APPSEVADTLVIMTAS--KGVRLPEPKDKILETPQKMTEKSESKTPGEGKKEDKSRMAEP 367
Query: 406 AEYYVRTTRS--MSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEET----- 458
+ Y+R T+S ++ K ++ + H +K G + N+ T
Sbjct: 368 MKGYMRPTKSRGLTPLLPKSTIQEQ-ERHKQLKSAGIARPEEGRPVVSGTGNDITTPPNK 426
Query: 459 ---DQSEIRMSGTCTGQPS-SRTSQKLLSLTKVSSPAGPTEDNDLSRKAVAQAPG 509
E + T QP+ + TS+ T + PT L++K ++ A G
Sbjct: 427 ELPPSPEKKTKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSLASG 481
>gi|47519675 microtubule-associated protein 4 isoform 2 [Homo
sapiens]
Length = 887
Score = 37.0 bits (84), Expect = 0.11
Identities = 75/355 (21%), Positives = 133/355 (37%), Gaps = 48/355 (13%)
Query: 198 HLLSLKSELPDSPEPVTEINEDSVLIPP----TAQPEKGVDTFLRRPNFTRATTVPLQTL 253
H L K+EL DS + I+E V+ + + V+ VP++
Sbjct: 132 HSLKNKAELADSMKNEAGIDEGHVIGESESVHSGASKHSVEKVTELAKGHLLPGVPVEDQ 191
Query: 254 SDSGSSQHLEHIPPKGSSELTTHDLKNIRFTS--------PVSLEAQGKKMTVSTDNLL- 304
S G ++ LE +G+ H + + T P LE + +K++ D
Sbjct: 192 SLPGEARALEGYADRGN--FPAHPVNEEKETKEGSVAVQIPDLLEDKAQKLSFCEDQNAQ 249
Query: 305 ---------VNKAISKSGQLPTSSN---LEANISCSLNELTYNNLPANENQNLKEQNQTE 352
+NK + + P S N E +++C + EL +LP E Q+ ++ E
Sbjct: 250 DRNSKGSDSLNKKVDLTLLSPKSENDKLKEISLACKITELESVSLPTPEIQSDFLHSKVE 309
Query: 353 KSLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEG-------LLFP 405
+DTL + + L +PK LE ++ + S T EG + P
Sbjct: 310 APPSEVADTLVIMTAS--KGVRLPEPKDKILETPQKMTEKSESKTPGEGKKEDKSRMAEP 367
Query: 406 AEYYVRTTRS--MSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEET----- 458
+ Y+R T+S ++ K ++ + H +K G + N+ T
Sbjct: 368 MKGYMRPTKSRGLTPLLPKSTIQEQ-ERHKQLKSAGIARPEEGRPVVSGTGNDITTPPNK 426
Query: 459 ---DQSEIRMSGTCTGQPS-SRTSQKLLSLTKVSSPAGPTEDNDLSRKAVAQAPG 509
E + T QP+ + TS+ T + PT L++K ++ A G
Sbjct: 427 ELPPSPEKKTKPLATTQPAKTSTSKAKTQPTSLPKQPAPTTIGGLNKKPMSLASG 481
>gi|104526627 triadin [Homo sapiens]
Length = 729
Score = 37.0 bits (84), Expect = 0.11
Identities = 83/396 (20%), Positives = 150/396 (37%), Gaps = 73/396 (18%)
Query: 12 EEKEKLKEKLAFLKREYSKTLARLQ-RAQRAEKIKHSIKKTVE--EQDCLSQ---QDLSP 65
E+K KEK+ ++ +KTLA+ Q +A+ AEK + KK V+ +Q+ + Q +
Sbjct: 181 EKKATHKEKIEKKEKPETKTLAKEQKKAKTAEKSEEKTKKEVKGGKQEKVKQTAAKVKEV 240
Query: 66 QLKHSEPKNKICVYDKLHIKTHLDEETGEKTSITLDVGPE-SFNPGDGPGGLPIQRTDDT 124
Q S+PK K +K + H ++ +D+ PG P P T+
Sbjct: 241 QKTPSKPKEKE-DKEKAAVSKHEQKDQYAFCRYMIDIFVHGDLKPGQSPAIPPPLPTEQA 299
Query: 125 QEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISS 184
P + P+ E+K+ +KK +K+ S + KE+E+I
Sbjct: 300 SRPTP---ASPALEEKE---GEKKKAEKKV----------------TSETKKKEKEDIKK 337
Query: 185 KNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRPNFTR 244
K +E T + K E P +E + +V I A +K + ++
Sbjct: 338 K-------SEKETAIDVEKKE----PGKASETKQGTVKIAAQAAAKKD-----EKKEDSK 381
Query: 245 ATTVPLQTLSDSGSSQHL--EHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTDN 302
T P + G Q +H+ P S + K S ++A+ ++
Sbjct: 382 KTKKPAEVEQPKGKKQEKKEKHVEPAKSPK------KEHSVPSDKQVKAKTERAKEEIGA 435
Query: 303 LLVNKAISKSGQLPTSSNLEANISCSLNELTYN-------------NLPANENQNLKEQN 349
+ + KA+ + T+ +E I + T + +PA+ + E
Sbjct: 436 VSIKKAVPGKKEEKTTKTVEQEIRKEKSGKTSSILKDKEPIKGKEEKVPASLKEKEPETK 495
Query: 350 QTEKSLKSPSDT------LDGRNENLQESEILSQPK 379
+ EK K+ + L G+ E E +I + K
Sbjct: 496 KDEKMSKAGKEVKPKPPQLQGKKEEKPEPQIKKEAK 531
Score = 32.3 bits (72), Expect = 2.8
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 2/153 (1%)
Query: 420 QRKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGTCTGQPSSR--T 477
++KV E + D+KKK K D K ET Q ++++ + +
Sbjct: 320 EKKVTSETKKKEKEDIKKKSEKETAIDVEKKEPGKASETKQGTVKIAAQAAAKKDEKKED 379
Query: 478 SQKLLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYTGKRKSACTPASDHCEPLLPTSSLS 537
S+K +V P G ++ A++P + ++ ++ + + S+
Sbjct: 380 SKKTKKPAEVEQPKGKKQEKKEKHVEPAKSPKKEHSVPSDKQVKAKTERAKEEIGAVSIK 439
Query: 538 IVNRSKEEVTSHKYQHEKLFIQVKGKKSRHQKE 570
K+E + K +++ + GK S K+
Sbjct: 440 KAVPGKKEEKTTKTVEQEIRKEKSGKTSSILKD 472
>gi|109255230 centrosomal protein 170kDa isoform beta [Homo sapiens]
Length = 1486
Score = 36.6 bits (83), Expect = 0.15
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 16/221 (7%)
Query: 244 RATTVPLQTLSDSGSS-QHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTDN 302
+ ++VP +SD SS Q P G + LT+ D V + +G K+T S +
Sbjct: 929 QTSSVPHSAISDIMSSDQETYSCKPHGRTPLTSAD-------EHVHSKLEGSKVTKSKTS 981
Query: 303 LLVNKAISKSGQLPTSSNLEANI--SCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD 360
+V+ + SKS LP ++ L E + + L + ++ + T S P
Sbjct: 982 PVVSGSSSKSTTLPRPRPTRTSLLRRARLGEASDSELADADKASVASEVSTTSSTSKPP- 1040
Query: 361 TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRT-TRSMSNC 419
GR N+ ++L+QP+ L + S S + + + AE +R+ R + +
Sbjct: 1041 --TGR-RNISRIDLLAQPRRTRLGSLSARSDSEATISRSSASSRTAEAIIRSGARLVPSD 1097
Query: 420 QRKVAVEAVIQSHL-DVKKKGFKNKNKDASKNLNLSNEETD 459
+ + A S L D K K + + AS N TD
Sbjct: 1098 KFSPRIRANSISRLSDSKVKSMTSAHGSASVNSRWRRFPTD 1138
>gi|109255228 centrosomal protein 170kDa isoform alpha [Homo sapiens]
Length = 1584
Score = 36.6 bits (83), Expect = 0.15
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 16/221 (7%)
Query: 244 RATTVPLQTLSDSGSS-QHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTDN 302
+ ++VP +SD SS Q P G + LT+ D V + +G K+T S +
Sbjct: 1027 QTSSVPHSAISDIMSSDQETYSCKPHGRTPLTSAD-------EHVHSKLEGSKVTKSKTS 1079
Query: 303 LLVNKAISKSGQLPTSSNLEANI--SCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD 360
+V+ + SKS LP ++ L E + + L + ++ + T S P
Sbjct: 1080 PVVSGSSSKSTTLPRPRPTRTSLLRRARLGEASDSELADADKASVASEVSTTSSTSKPP- 1138
Query: 361 TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRT-TRSMSNC 419
GR N+ ++L+QP+ L + S S + + + AE +R+ R + +
Sbjct: 1139 --TGR-RNISRIDLLAQPRRTRLGSLSARSDSEATISRSSASSRTAEAIIRSGARLVPSD 1195
Query: 420 QRKVAVEAVIQSHL-DVKKKGFKNKNKDASKNLNLSNEETD 459
+ + A S L D K K + + AS N TD
Sbjct: 1196 KFSPRIRANSISRLSDSKVKSMTSAHGSASVNSRWRRFPTD 1236
>gi|238624188 diffuse panbronchiolitis critical region 1 protein [Homo
sapiens]
Length = 1393
Score = 36.2 bits (82), Expect = 0.19
Identities = 86/451 (19%), Positives = 154/451 (34%), Gaps = 56/451 (12%)
Query: 144 PSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISSKNPA----RSPVTEIRTHL 199
PS + R + E+ +F + + E+ S P R+P +T
Sbjct: 636 PSPAGPTENREMTANEKTTLFPAEPTENRERTANEKTTSSPAEPTENGQRTPFANEKT-- 693
Query: 200 LSLKSELPDSPEPVTEINEDSVLIP--PTAQPEKGVDT----FLRRPNFTRATTVPLQTL 253
S +E + E NE++ L P PT E+ + F P R T T
Sbjct: 694 TSSSAEPTEHGERTPLANENTTLSPAEPTENRERTANEKTTPFPAEPTENRERTANENTT 753
Query: 254 ------SDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTDNLLVNK 307
+++G L + S T + K F + + + + + L N+
Sbjct: 754 PSPAQPTENGDRTPLANEKTTPSLAEPTENGKRTPFANEKTTSSSAEPTEHAERTPLANE 813
Query: 308 AISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSDTLDGRNE 367
+ S PT N + NE T PA +N +E EK+ P++ + R
Sbjct: 814 NTTSSPAEPTE-----NRERTANEKT-TQFPAEPTEN-RESTANEKTTPFPAEPTENREW 866
Query: 368 NLQESEILSQPKSLSLEATSPLSAEKHSCTVPE-----------------GLLFPAEYYV 410
E+ LS + E +PL+ EK + + E P E+
Sbjct: 867 TANENTTLSPAEPTEHEEMTPLANEKTTLSPAEPTENGERTPFTNEKTTPSSAEPTEHGE 926
Query: 411 RT--TRSMSNCQR--------KVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQ 460
RT ++ R ++A E S + G N+D + + E ++
Sbjct: 927 RTPLANEITTPSRAEPTEHGERIANEKATPSPAKPTEHGETTVNEDTTPSSAEPTENGER 986
Query: 461 SEIRMSGTCTG-QPSSRTSQKLLSLTKVSSPAGPTEDNDLSRKA---VAQAPGRRYTGKR 516
+ + T T S+ ++ + SPA PTE + + A +P + +
Sbjct: 987 TPLANENTTTSPTESTEHGERTANEKTTPSPAEPTEHGERTPSANEKTIPSPAKPTEHEE 1046
Query: 517 KSACTPASDHCEPLLPTSSLSIVNRSKEEVT 547
+ + P+ PT + E++T
Sbjct: 1047 MTPSANENTTPSPVKPTEHGEKTTLANEKIT 1077
>gi|124244056 family with sequence similarity 123B [Homo sapiens]
Length = 1135
Score = 36.2 bits (82), Expect = 0.19
Identities = 22/102 (21%), Positives = 36/102 (35%)
Query: 795 QGQPTCDCDSVPPGTPPPIESFTFKENQLCRNTCQELHKHSVEQTETAELPASDSINPGN 854
Q P P +PP E K+ + C H E + L S G
Sbjct: 232 QDAPGPKVSPTPEPSPPATEKMACKDPEKPMEACASAHVQPKPAPEASSLEEPHSPETGE 291
Query: 855 LQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITACEDVVS 896
+ E+ P+G +S +F + K +T C D+++
Sbjct: 292 KVVAGEVNPPNGPVGDPLSLLFGDVTSLKSFDSLTGCGDIIA 333
>gi|91982772 mucin 17 [Homo sapiens]
Length = 4493
Score = 36.2 bits (82), Expect = 0.19
Identities = 41/157 (26%), Positives = 64/157 (40%), Gaps = 17/157 (10%)
Query: 243 TRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPV-SLEAQGKKMTVSTD 301
T +T L + G+S IP SE TT T+PV S E T
Sbjct: 3372 TTSTEASLSPTTAEGTS-----IPTSSPSEGTTPLASMPVSTTPVVSSEVNTLSTTPVDS 3426
Query: 302 NLLVNKA--------ISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEK 353
N LV + I++ LPTS+ E + S+ L+ + ++E L + T
Sbjct: 3427 NTLVTTSTEASSSPTIAEGTSLPTSTTSEGSTPLSIMPLSTTPVASSEASTL---STTPV 3483
Query: 354 SLKSPSDTLDGRNENLQESEILSQPKSLSLEATSPLS 390
+P T N + +E+ S P S + E ++PL+
Sbjct: 3484 DTSTPVTTSSPTNSSPTTAEVTSMPTSTAGEGSTPLT 3520
Score = 32.3 bits (72), Expect = 2.8
Identities = 45/256 (17%), Positives = 93/256 (36%), Gaps = 41/256 (16%)
Query: 182 ISSKNPARSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRPN 241
+S+ A S + + T + K+++ S E + V PT+ P +G
Sbjct: 459 VSTTPVASSEASNLSTTPVDSKTQVTTSTEASSSPPTAEVNSMPTSTPSEG--------- 509
Query: 242 FTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVSTD 301
+ PL ++S S P SSE +T + ++PV+ ++ + + +
Sbjct: 510 -----STPLTSMSVSTM--------PVASSEASTLSTTPVDTSTPVTTSSEASSSSTTPE 556
Query: 302 NLLVNKAISKSGQLP-TSSNLEANISCSLNELTYNNLPANEN------QNLKEQNQTEKS 354
+ + G P T+ + + S T + PA+ N + T +
Sbjct: 557 GTSIPTSTPSEGSTPLTNMPVSTRLVVSSEASTTSTTPADSNTFVTTSSEASSSSTTAEG 616
Query: 355 LKSPSDTLDGRNENLQESEI------LSQPKSLS---LEATSPLSAEKH---SCTVPEGL 402
P+ T R + + S+ +LS +++ +P++ S T EG
Sbjct: 617 TSMPTSTYSERGTTITSMSVSTTLVASSEASTLSTTPVDSNTPVTTSTEATSSSTTAEGT 676
Query: 403 LFPAEYYVRTTRSMSN 418
P Y + +++
Sbjct: 677 SMPTSTYTEGSTPLTS 692
Score = 32.0 bits (71), Expect = 3.6
Identities = 68/330 (20%), Positives = 108/330 (32%), Gaps = 36/330 (10%)
Query: 240 PNFTRATTVPLQTLSDSGSSQHLEHIPPK----GSSELTTHDLKNIRFTSPVSLEAQGKK 295
P +TT+P T S+ S L +P SSE T + ++PV++ AQ
Sbjct: 198 PTTPESTTIPKSTNSEG--STPLTSMPASTMKVASSEAITLLTTPVEISTPVTISAQASS 255
Query: 296 MTVSTDNLLVNKAISKSGQLP-TSSNLEANISCSLNELTYNNLPANENQNLKEQNQTEKS 354
+ + ++ + G P T L + S T + PA N + + S
Sbjct: 256 SPTTAEGPSLSNSAPSGGSTPLTRMPLSVMLVVSSEASTLSTTPAATNIPVITSTEASSS 315
Query: 355 LKSPSDTLDGRNENLQES-EILSQPKSLSLEATSPLSAEK----------HSCTVPEGLL 403
+ T + + S + S P S ATS +S + T P L
Sbjct: 316 PTTAEGTSIPTSTYTEGSTPLTSTPASTMPVATSEMSTLSITPVDTSTLVTTSTEPSSLP 375
Query: 404 FPAEYYVRTTRSMSNCQRKV-----------AVEAVIQSHLDVKKKGFKNKNKDASKNLN 452
AE T ++S + + EA S + V K F +AS +
Sbjct: 376 TTAEATSMLTSTLSEGSTPLTNMPVSTILVASSEASTTSTIPVDSKTFVTTASEASSSPT 435
Query: 453 LSNEETDQSEIRMSGT--CTGQPSSRT-----SQKLLSLTKVSSPAGPTEDNDLSRKAVA 505
+ + + + G+ T P S T LS T V S T + S
Sbjct: 436 TAEDTSIATSTPSEGSTPLTSMPVSTTPVASSEASNLSTTPVDSKTQVTTSTEASSSPPT 495
Query: 506 QAPGRRYTGKRKSACTPASDHCEPLLPTSS 535
T TP + +P +S
Sbjct: 496 AEVNSMPTSTPSEGSTPLTSMSVSTMPVAS 525
>gi|154350236 hypothetical protein LOC56204 [Homo sapiens]
Length = 1076
Score = 36.2 bits (82), Expect = 0.19
Identities = 49/209 (23%), Positives = 75/209 (35%), Gaps = 37/209 (17%)
Query: 259 SQHLEHIPPKGS----SELTTHDLKNIR---FTSPVSLEAQGKKMTVSTDNLLVNKAISK 311
+QHLEHI P S HD ++ F S + KK + + + S
Sbjct: 490 AQHLEHIDPTASHIPRQSFNMHDSSSVASKVFRSSYEDKNLLKKNKDESSVSISHTKCSL 549
Query: 312 SGQLPTSSNLEANI-----------SCSLNELTYNNLPANENQNLKEQNQTEKSLKSPSD 360
G + NL N CSL T N QN + ++S
Sbjct: 550 LGDISDGKNLVPNKCFTSFKNNSKEKCSLKHQTRNQC----------QNNPSEIIQSTYQ 599
Query: 361 TLDGRNENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGLLFPAEYYVRTTRSMSNCQ 420
++ +L S ILSQ K +L+ TS ++ S + + +Y TT C
Sbjct: 600 ETQNKSSSLSTSSILSQHKENNLDLTSRFKEQEMSNGIDK------QYSNCTTIDKQICT 653
Query: 421 RKVAVEAVIQSHLDVKKKGFKNKNKDASK 449
K + + +++ K F N D SK
Sbjct: 654 NKYKEKIINENY---NPKFFGNLQSDDSK 679
>gi|38044112 restin isoform b [Homo sapiens]
Length = 1392
Score = 35.8 bits (81), Expect = 0.25
Identities = 73/386 (18%), Positives = 147/386 (38%), Gaps = 53/386 (13%)
Query: 12 EEKEKLKEKLAFLKREYSKTLARLQR--AQRAEKIKHSIKKTVEEQDCLSQQD--LSPQL 67
+E L+EKL + ++ + + L+ R E + IK + LS+++ L +L
Sbjct: 504 QEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKL 563
Query: 68 KHSEPKNKICVY---DKLH--IKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQRTD 122
+H+ +N + KL I +H K S + +G E+ + + R D
Sbjct: 564 EHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLD 623
Query: 123 DTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEI 182
+ H + + +Q + + K+ + +LR ++ +++E
Sbjct: 624 -----YQHEIENLQNQQDSERAAHAKEME----------------ALRAKLMKVIKEKE- 661
Query: 183 SSKNPARSPVTEIRT-HLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRPN 241
+S RS + + HL+ ++ L E ++ E VL + K +D F +
Sbjct: 662 NSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLK 721
Query: 242 FTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRF--------TSPVSLEAQG 293
T + L L + S E + E +K++ S ++ E QG
Sbjct: 722 ATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQG 781
Query: 294 K--KMTVSTDNL----LVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKE 347
+ K+T +NL V + + K Q+ EA+ ++ + + + +
Sbjct: 782 RELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAV-------SVQRSMQETVNK 834
Query: 348 QNQTEKSLKSPSDTLDGRNENLQESE 373
+Q E+ S L+ ENL + E
Sbjct: 835 LHQKEEQFNMLSSDLEKLRENLADME 860
>gi|4506751 restin isoform a [Homo sapiens]
Length = 1427
Score = 35.8 bits (81), Expect = 0.25
Identities = 73/386 (18%), Positives = 147/386 (38%), Gaps = 53/386 (13%)
Query: 12 EEKEKLKEKLAFLKREYSKTLARLQR--AQRAEKIKHSIKKTVEEQDCLSQQD--LSPQL 67
+E L+EKL + ++ + + L+ R E + IK + LS+++ L +L
Sbjct: 539 QEISSLQEKLEVTRTDHQREITSLKEHFGAREETHQKEIKALYTATEKLSKENESLKSKL 598
Query: 68 KHSEPKNKICVY---DKLH--IKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQRTD 122
+H+ +N + KL I +H K S + +G E+ + + R D
Sbjct: 599 EHANKENSDVIALWKSKLETAIASHQQAMEELKVSFSKGLGTETAEFAELKTQIEKMRLD 658
Query: 123 DTQEHFPHRVSDPSGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEI 182
+ H + + +Q + + K+ + +LR ++ +++E
Sbjct: 659 -----YQHEIENLQNQQDSERAAHAKEME----------------ALRAKLMKVIKEKE- 696
Query: 183 SSKNPARSPVTEIRT-HLLSLKSELPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRPN 241
+S RS + + HL+ ++ L E ++ E VL + K +D F +
Sbjct: 697 NSLEAIRSKLDKAEDQHLVEMEDTLNKLQEAEIKVKELEVLQAKCNEQTKVIDNFTSQLK 756
Query: 242 FTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRF--------TSPVSLEAQG 293
T + L L + S E + E +K++ S ++ E QG
Sbjct: 757 ATEEKLLDLDALRKASSEGKSEMKKLRQQLEAAEKQIKHLEIEKNAESSKASSITRELQG 816
Query: 294 K--KMTVSTDNL----LVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKE 347
+ K+T +NL V + + K Q+ EA+ ++ + + + +
Sbjct: 817 RELKLTNLQENLSEVSQVKETLEKELQILKEKFAEASEEAV-------SVQRSMQETVNK 869
Query: 348 QNQTEKSLKSPSDTLDGRNENLQESE 373
+Q E+ S L+ ENL + E
Sbjct: 870 LHQKEEQFNMLSSDLEKLRENLADME 895
>gi|213385278 TNF receptor-associated factor 3 interacting protein 1
isoform 2 [Homo sapiens]
Length = 625
Score = 35.8 bits (81), Expect = 0.25
Identities = 80/409 (19%), Positives = 150/409 (36%), Gaps = 52/409 (12%)
Query: 12 EEKEKLKEKLAFLKREYSKTLARLQRAQRAEKIKHSIKKTVEEQDCLSQQDLSPQLKHSE 71
++KEK KE RE + A+ + E+ K + E+D S++ + K
Sbjct: 199 KDKEKAKENGGNRHREGERERAKARARPDNERQKDRGNR---ERDRDSERKKETERKSEG 255
Query: 72 PKNKICVYDKLHIKTHLDEETGEKTSITLDVGPESFNPGDGPGGLPIQRTDDTQEHFPHR 131
K K + D+ D + G+ + +G + R + + P +
Sbjct: 256 GKEKERLRDR---DRERDRDKGKDR--------DRRRVKNGEHSWDLDREKNREHDKPEK 304
Query: 132 VSDPSGEQKQKLPS---RRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISSKNPA 188
S SGE +KL + K + T IS T + + K E + S
Sbjct: 305 KSASSGEMSKKLSDGTFKDSKAETETEISTRASKSLTTKTSKRRSKNSVEGDSTSDAEGD 364
Query: 189 RSPVTEIRTHLLSLKSELPDSPEPVTEINEDSVLIP---------PTAQPEKGVDTFLRR 239
P + KSE+P++PE E++ + IP P + + ++
Sbjct: 365 AGPAGQD-------KSEVPETPEIPNELSSNIRRIPRPGSARPAPPRVKRQDSMEALQMD 417
Query: 240 PNFTRATTVPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGKKMTVS 299
+ + T + T S + ++ + + + +L+ ++ I + V LE + K +
Sbjct: 418 RSGSGKTVSNVITESHNSDNEEDDQFVVEAAPQLS--EMSEIEMVTAVELEEEEKHGGLV 475
Query: 300 TDNLLVNKAISKSGQLPTSSNLEANISCSLNELTYNNLPANENQNLKEQNQT-------- 351
L K K Q P E ++ S + ++ + E + L+ QT
Sbjct: 476 KKILETKKDYEKLQQSPKPGEKERSLFESAWKKE-KDIVSKEIEKLRTSIQTLCKSALPL 534
Query: 352 EKSLKSPSDTLDG--------RNENLQESEILSQPKSLSLEATSPLSAE 392
K + + +D +EN Q +E L Q + ++ A PL AE
Sbjct: 535 GKIMDYIQEDVDAMQNELQMWHSENRQHAEALQQEQRITDCAVEPLKAE 583
>gi|21040326 SON DNA-binding protein isoform F [Homo sapiens]
Length = 2426
Score = 35.8 bits (81), Expect = 0.25
Identities = 76/376 (20%), Positives = 142/376 (37%), Gaps = 64/376 (17%)
Query: 195 IRTHLLSLKSE----LPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRPNFTRATTVPL 250
I HL++ + E PV EI E+ +L + +DT+ P + A
Sbjct: 1536 INNHLIAKEMEHNTVCAAGTSPVGEIGEEKILPTSETKQRTVLDTY---PGVSEADAG-- 1590
Query: 251 QTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGK---KMTVSTDNLLVNK 307
+TLS +G P T K I FT+ +L K ++++T + +
Sbjct: 1591 ETLSSTG---------PFALEPDATGTSKGIEFTTASTLSLVNKYDVDLSLTTQDTEHDM 1641
Query: 308 AISKSGQLPTSSNLEANISCS---LNELTYNNLPANENQN---LKEQNQTEKSLKSPSDT 361
IS S + +++E + L+ + NNL + + + +KE +QT +L SP ++
Sbjct: 1642 VISTSPSGGSEADIEGPLPAKDIHLDLPSNNNLVSKDTEEPLPVKESDQTLAALLSPKES 1701
Query: 362 LDGRN-------------------ENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGL 402
G E++ E++++ +E + L A + +
Sbjct: 1702 SGGEKEVPPPPKETLPDSGFSANIEDINEADLVRPLLPKDMERLTSLRAGIEGPLLASDV 1761
Query: 403 ------LFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNE 456
P + S S+ + K E ++ D +K KNKN+D + +
Sbjct: 1762 GRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVK-DTHEKSKKNKNRDKGEK-EKKRD 1819
Query: 457 ETDQSEIRMSGTCTGQPSSRTSQKLLSLTKVSSPAGPTEDNDLSR----------KAVAQ 506
+ +S + S + + RTS+ K SS + SR ++ ++
Sbjct: 1820 SSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSK 1879
Query: 507 APGRRYTGKRKSACTP 522
+ GRR K K +P
Sbjct: 1880 SRGRRSVSKEKRKRSP 1895
>gi|21040314 SON DNA-binding protein isoform B [Homo sapiens]
Length = 2303
Score = 35.8 bits (81), Expect = 0.25
Identities = 76/376 (20%), Positives = 142/376 (37%), Gaps = 64/376 (17%)
Query: 195 IRTHLLSLKSE----LPDSPEPVTEINEDSVLIPPTAQPEKGVDTFLRRPNFTRATTVPL 250
I HL++ + E PV EI E+ +L + +DT+ P + A
Sbjct: 1536 INNHLIAKEMEHNTVCAAGTSPVGEIGEEKILPTSETKQRTVLDTY---PGVSEADAG-- 1590
Query: 251 QTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQGK---KMTVSTDNLLVNK 307
+TLS +G P T K I FT+ +L K ++++T + +
Sbjct: 1591 ETLSSTG---------PFALEPDATGTSKGIEFTTASTLSLVNKYDVDLSLTTQDTEHDM 1641
Query: 308 AISKSGQLPTSSNLEANISCS---LNELTYNNLPANENQN---LKEQNQTEKSLKSPSDT 361
IS S + +++E + L+ + NNL + + + +KE +QT +L SP ++
Sbjct: 1642 VISTSPSGGSEADIEGPLPAKDIHLDLPSNNNLVSKDTEEPLPVKESDQTLAALLSPKES 1701
Query: 362 LDGRN-------------------ENLQESEILSQPKSLSLEATSPLSAEKHSCTVPEGL 402
G E++ E++++ +E + L A + +
Sbjct: 1702 SGGEKEVPPPPKETLPDSGFSANIEDINEADLVRPLLPKDMERLTSLRAGIEGPLLASDV 1761
Query: 403 ------LFPAEYYVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNE 456
P + S S+ + K E ++ D +K KNKN+D + +
Sbjct: 1762 GRDRSAASPVVSSMPERASESSSEEKDDYEIFVKVK-DTHEKSKKNKNRDKGEK-EKKRD 1819
Query: 457 ETDQSEIRMSGTCTGQPSSRTSQKLLSLTKVSSPAGPTEDNDLSR----------KAVAQ 506
+ +S + S + + RTS+ K SS + SR ++ ++
Sbjct: 1820 SSLRSRSKRSKSSEHKSRKRTSESRSRARKRSSKSKSHRSQTRSRSRSRRRRRSSRSRSK 1879
Query: 507 APGRRYTGKRKSACTP 522
+ GRR K K +P
Sbjct: 1880 SRGRRSVSKEKRKRSP 1895
>gi|7656879 ALL1 fused gene from 5q31 [Homo sapiens]
Length = 1163
Score = 35.8 bits (81), Expect = 0.25
Identities = 81/405 (20%), Positives = 149/405 (36%), Gaps = 59/405 (14%)
Query: 136 SGEQKQKLPSRRKKQQKRTFISQERDCVFGTDSLRLSGKRLKEQEEISSKNPARSPVTEI 195
SG +QK P++ +R + + K+ K+ E+ +++ P E
Sbjct: 542 SGRGRQKSPAQSDSTTQRRTVGK---------------KQPKKAEKAAAEEPRGGLKIES 586
Query: 196 RTHLLSLKSELPDSPEPVT-------EINEDSVLIP-PTAQPEKGVDTFLRRPNFTRATT 247
T + L S +P S I ++S P PTA+ +K T ++ +
Sbjct: 587 ETPV-DLASSMPSSRHKAATKGSRKPNIKKESKSSPRPTAEKKKYKST----SKSSQKSR 641
Query: 248 VPLQTLSDSGSSQHLEHIPPKGSSELTTHDLKNIRFTSPVSLEAQG-----KKMTVSTDN 302
++T + S S E +PP SS+ + N P S+E + + + +
Sbjct: 642 EIIETDTSSSDSDESESLPP--SSQTPKYPESNRTPVKPSSVEEEDSFFRQRMFSPMEEK 699
Query: 303 LLVNKAISKSGQLPTSSNLEANISCSLNELTYNNL--PANENQNLKEQNQTEKSLKSPSD 360
L++ + P ++ N+ + Y P E +N+ E++ T ++ K S+
Sbjct: 700 ELLSPLSEPDDRYPLIVKIDLNLLTRIPGKPYKETEPPKGEKKNVPEKH-TREAQKQASE 758
Query: 361 TLDGR------NENLQESEILSQPK-----SLSLEATSPLSAEKHSCTVPEGLL-FPAEY 408
+ + NE+ + +PK S + +S + K S + LL PA
Sbjct: 759 KVSNKGKRKHKNEDDNRASESKKPKTEDKNSAGHKPSSNRESSKQSAAKEKDLLPSPAGP 818
Query: 409 YVRTTRSMSNCQRKVAVEAVIQSHLDVKKKGFKNKNKDASKNLNLSNEETDQSEIRMSGT 468
+ RK + QS K N NK+ S + S+ + Q +
Sbjct: 819 VPSKDPKTEHGSRK---RTISQSS---SLKSSSNSNKETSGSSKNSSSTSKQKKTEGK-- 870
Query: 469 CTGQPSSRTSQKLLSLTKVSSPAGPTEDNDLSRKAVAQAPGRRYT 513
T S +K S + P+ PT D+ R+ R Y+
Sbjct: 871 -TSSSSKEVKEKAPSSSSNCPPSAPTLDSSKPRRTKLVFDDRNYS 914
>gi|23199987 WD repeat domain 5B [Homo sapiens]
Length = 330
Score = 35.8 bits (81), Expect = 0.25
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 1126 HCAAAILTSGTI----AIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIF 1181
+C+ +++ SG+ IWD GQC L + SFVK+S ++L D +
Sbjct: 176 NCSGSLIVSGSYDGLCRIWDAASGQCLKTLVDDDNPPVSFVKFSPNGKYILTATLDNTLK 235
Query: 1182 VYHYS 1186
++ YS
Sbjct: 236 LWDYS 240
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.129 0.375
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,168,900
Number of Sequences: 37866
Number of extensions: 2574359
Number of successful extensions: 7876
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 159
Number of HSP's that attempted gapping in prelim test: 7591
Number of HSP's gapped (non-prelim): 451
length of query: 1186
length of database: 18,247,518
effective HSP length: 113
effective length of query: 1073
effective length of database: 13,968,660
effective search space: 14988372180
effective search space used: 14988372180
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 68 (30.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.