Guide to the Human Genome
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Name: FAM123B Sequence: fasta or formatted (1135aa) NCBI GI: 124244056
Description:

family with sequence similarity 123B

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.5         96           3
 C cysteine            1.8         20           2
 D aspartate           5.2         59           4
 E glutamate          11.5        130           8
 F phenylalanine       2.9         33           2
 G glycine             7.8         89           3
 H histidine           2.5         28           2
 I isoleucine          1.1         13           2
 K lysine              4.1         47           2
 L leucine             7.3         83           2
 M methionine          2.5         28           1
 N asparagine          2.3         26           2
 P proline            10.0        114           3
 Q glutamine           4.4         50           2
 R arginine            5.6         64           2
 S serine             10.6        120           4
 T threonine           4.8         55           2
 V valine              3.4         39           2
 W tryptophan          0.8          9           1
 Y tyrosine            2.8         32           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   family with sequence similarity 123B 
FAM123A               0.080   hypothetical protein LOC219287 isoform 1 
FAM123A               0.035   hypothetical protein LOC219287 isoform 2 
FAM123C               0.023   hypothetical protein LOC205147 
FAM123C               0.023   hypothetical protein LOC205147 
FAM123C               0.023   hypothetical protein LOC205147 
FAM123C               0.023   hypothetical protein LOC205147 
EHMT2                 0.013   euchromatic histone-lysine N-methyltransferase 2 is...
EHMT2                 0.013   euchromatic histone-lysine N-methyltransferase 2 is...
TTBK1                 0.013   tau tubulin kinase 1 
SLC24A1               0.012   solute carrier family 24 (sodium/potassium/calcium ex...
PELP1                 0.011   proline, glutamic acid and leucine rich protein 1 [...
FGD1                  0.011   faciogenital dysplasia protein 
SCAF1                 0.011   SR-related CTD-associated factor 1 
DAXX                  0.010   death-domain associated protein isoform a 
DAXX                  0.010   death-domain associated protein isoform a 
DAXX                  0.010   death-domain associated protein isoform b 
MYT1                  0.010   myelin transcription factor 1 
MYST4                 0.010   MYST histone acetyltransferase (monocytic leukemia)...
LOC728792             0.010   PREDICTED: hypothetical protein 
CHIC1                 0.010   cysteine-rich hydrophobic domain 1 
CSTF2                 0.010   cleavage stimulation factor subunit 2 
BCAN                  0.010   brevican isoform 2 
BCAN                  0.010   brevican isoform 1 
COL5A2                0.010   alpha 2 type V collagen preproprotein 
ZBTB7C                0.010   zinc finger and BTB domain containing 7C 
RGS3                  0.010   regulator of G-protein signalling 3 isoform 6 [Homo...
RGS3                  0.010   regulator of G-protein signalling 3 isoform 2 
RGS3                  0.010   regulator of G-protein signalling 3 isoform 1 
MICALCL               0.010   MICAL C-terminal like 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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