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Search of human proteins with 27436893
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27436893 tapasin isoform 1 precursor [Homo sapiens]
(448 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27436893 tapasin isoform 1 precursor [Homo sapiens] 917 0.0
gi|27436897 tapasin isoform 3 precursor [Homo sapiens] 833 0.0
gi|27436895 tapasin isoform 2 precursor [Homo sapiens] 595 e-170
gi|157739930 TAP binding protein-like [Homo sapiens] 77 2e-14
gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens] 41 0.002
gi|155030211 major histocompatibility complex, class II, DR beta... 40 0.004
gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo ... 39 0.007
gi|239740859 PREDICTED: similar to major histocompatibility comp... 39 0.007
gi|239740857 PREDICTED: similar to major histocompatibility comp... 39 0.007
gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens] 39 0.007
gi|38569493 potassium voltage-gated channel, subfamily H (eag-re... 39 0.012
gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo ... 38 0.021
gi|17986005 major histocompatibility complex, class II, DR beta ... 37 0.047
gi|239758092 PREDICTED: similar to HLA class II histocompatibili... 37 0.047
gi|239748785 PREDICTED: similar to HLA class II histocompatibili... 37 0.047
gi|239740745 PREDICTED: similar to HLA class II histocompatibili... 37 0.047
gi|239740743 PREDICTED: similar to HLA class II histocompatibili... 37 0.047
gi|239740695 PREDICTED: similar to HLA class II histocompatibili... 37 0.047
gi|239740693 PREDICTED: similar to HLA class II histocompatibili... 37 0.047
gi|239740855 PREDICTED: similar to major histocompatibility comp... 36 0.062
gi|239740853 PREDICTED: similar to major histocompatibility comp... 36 0.062
gi|239748415 PREDICTED: hypothetical protein [Homo sapiens] 36 0.081
gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo ... 36 0.081
gi|24797076 major histocompatibility complex, class II, DP beta ... 35 0.11
gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.14
gi|239753856 PREDICTED: hypothetical protein [Homo sapiens] 35 0.14
gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Hom... 35 0.14
gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo sap... 35 0.14
gi|52630344 major histocompatibility complex, class II, DR beta ... 35 0.18
gi|239758090 PREDICTED: major histocompatibility complex, class ... 35 0.18
>gi|27436893 tapasin isoform 1 precursor [Homo sapiens]
Length = 448
Score = 917 bits (2369), Expect = 0.0
Identities = 448/448 (100%), Positives = 448/448 (100%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
Query: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV
Sbjct: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
Query: 361 SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVGLFLSA 420
SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVGLFLSA
Sbjct: 361 SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLSGPSLEDSVGLFLSA 420
Query: 421 FLLLGLFKALGWAAVYLSTCKDSKKKAE 448
FLLLGLFKALGWAAVYLSTCKDSKKKAE
Sbjct: 421 FLLLGLFKALGWAAVYLSTCKDSKKKAE 448
>gi|27436897 tapasin isoform 3 precursor [Homo sapiens]
Length = 412
Score = 833 bits (2151), Expect = 0.0
Identities = 405/406 (99%), Positives = 405/406 (99%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT 300
Query: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV
Sbjct: 301 LARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSV 360
Query: 361 SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLS 406
SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAG S
Sbjct: 361 SLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGKS 406
>gi|27436895 tapasin isoform 2 precursor [Homo sapiens]
Length = 299
Score = 595 bits (1533), Expect = e-170
Identities = 289/289 (100%), Positives = 289/289 (100%)
Query: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL
Sbjct: 1 MKSLSLLLAVALGLATAVSAGPAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRPDL 60
Query: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD
Sbjct: 61 DPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALD 120
Query: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL
Sbjct: 121 GAWLMVSISSPVLSLSSLLRPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDL 180
Query: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA
Sbjct: 181 SFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAA 240
Query: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY
Sbjct: 241 WDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVY 289
>gi|157739930 TAP binding protein-like [Homo sapiens]
Length = 468
Score = 77.4 bits (189), Expect = 2e-14
Identities = 117/453 (25%), Positives = 174/453 (38%), Gaps = 67/453 (14%)
Query: 6 LLLAVALGLATAVSAGPA---------VIECWFVEDASGKGLA-----KRPGALLLRQGP 51
LLL +AL A PA V++C+ +D + +G + +L+L+Q P
Sbjct: 9 LLLCLALSGAAETKPHPAEGQWRAVDVVLDCFLAKDGAHRGALASSEDRARASLVLKQVP 68
Query: 52 ----GEPPPRPDLDPELYLSVHDPAGALQAAFR--RYPRGAPAPH---------CEMSRF 96
G D L+ DP +A+ + P+ H CE+SR+
Sbjct: 69 VLDDGSLEDFTDFQGGT-LAQDDPPIIFEASVDLVQIPQAEALLHADCSGKEVTCEISRY 127
Query: 97 VPLPASAKWASGLTPAQNCPRALDGAWLMVSISSP-VLSLSSLLRPQPEPQQEPVLITMA 155
+ N + G + + + +P V +L P P
Sbjct: 128 FLQMTETTVKTAAWFMANMQVSGGGPSISLVMKTPRVTKNEALWHPTLNLPLSPQGTVRT 187
Query: 156 TVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGH 215
V V+T T + LG A LD F S+APG +EWR QH G+G
Sbjct: 188 AVEFQVMTQTQSLSFLLGSSASLDCGF-----------SMAPGLDLISVEWRLQHKGRGQ 236
Query: 216 LLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQPFQEGTYLATIHL 275
L+ + T GQ A ++GA A + + LP + EGTY+ I
Sbjct: 237 LVYSWTA---GQGQAVRKGATLEPAQLG------MARDASLTLPGLTIQDEGTYICQITT 287
Query: 276 PYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGG 335
+ Q ++L + PKV L A A P L+C ++ +YP + V W R
Sbjct: 288 SLYRAQQIIQLNIQASPKVRLSLANEALL------PTLICDIAGYYPL-DVVVTW-TREE 339
Query: 336 PGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL--PASG 393
GG + G + S+LR G+ S+S L P + GA Y C++ H SL P
Sbjct: 340 LGGSPAQVSGASF-SSLRQSVAGTYSISSSLTAEPGSA---GATYTCQVTHISLEEPLGA 395
Query: 394 RSAEVTLEVAGLSGPSLEDSVGLFLSAFLLLGL 426
+ V E G S LFL A + LGL
Sbjct: 396 STQVVPPERRTALGVIFASS--LFLLALMFLGL 426
>gi|112790163 metal-regulatory transcription factor 1 [Homo sapiens]
Length = 753
Score = 41.2 bits (95), Expect = 0.002
Identities = 43/157 (27%), Positives = 66/157 (42%), Gaps = 31/157 (19%)
Query: 37 GLAKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRF 96
GL++ P LL P PPP P L P G+ QAAF P P
Sbjct: 426 GLSEPPQPLLPASAPSAPPPAPSLGP----------GSQQAAFGNPPALLQPPE------ 469
Query: 97 VPLPASAKWASG---LTPAQNCPRAL-DGAWLMVSISSPVLSLSSLLRPQPEPQQ--EPV 150
VP+P S ++A+ P P+ + G ++ S+ +++S + PQ EP+
Sbjct: 470 VPVPHSTQFAANHQEFLPHPQAPQPIVPGLSVVAGASASAAAVASAVAAPAPPQSTTEPL 529
Query: 151 LITMATV------VLT---VLTHTPAPRVRLGQDALL 178
+ T+ VLT +T TP P + Q +L+
Sbjct: 530 PAMVQTLPLGANSVLTNNPTITITPTPNTAILQSSLV 566
>gi|155030211 major histocompatibility complex, class II, DR beta 1
precursor [Homo sapiens]
Length = 266
Score = 40.0 bits (92), Expect = 0.004
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W L G Q+ + +
Sbjct: 126 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFLNG------QEEKAGMVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L + D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSG 231
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 232 ------VGGFVLGLLFLG 243
>gi|239748820 PREDICTED: hypothetical protein XP_002346811 [Homo
sapiens]
Length = 266
Score = 39.3 bits (90), Expect = 0.007
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L H+ D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 176 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSG 231
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 232 ------VGGFVLGLLFLG 243
>gi|239740859 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 39.3 bits (90), Expect = 0.007
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 127 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 176
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L H+ D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 177 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSG 232
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 233 ------VGGFVLGLLFLG 244
>gi|239740857 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 39.3 bits (90), Expect = 0.007
Identities = 40/138 (28%), Positives = 60/138 (43%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PKVTVYPS---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKTGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L H+ D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 176 LIHNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVTSPLTVEWRARSESAQSKMLSG 231
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 232 ------VGGFVLGLLFLG 243
>gi|194018488 peroxisomal biogenesis factor 6 [Homo sapiens]
Length = 980
Score = 39.3 bits (90), Expect = 0.007
Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 44/241 (18%)
Query: 3 SLSLLLAVALGLATAVSAG----PAVIECWFVEDASGKGLAKRPGALLLRQGPGEPPPRP 58
S +LL +ALG V A P + + + G GL R G LL+R+G P P P
Sbjct: 77 SRALLRLLALGSGAWVRARAVRRPPALGWALLGTSLGPGLGPRVGPLLVRRGETLPVPGP 136
Query: 59 D-----------LDPELYLSVHDPAGALQAAFRRYPRGAPAPHCEMSRFVPLPASAKWAS 107
L P L+V + G + P P +S F + + +
Sbjct: 137 RVLETRPALQGLLGPGTRLAVTELRGRARLCPESGDSSRPPPPPVVSSFA-VSGTVRRLQ 195
Query: 108 G--------LTPAQNCPRAL---DGAWLMVS-----------------ISSPVLSLSSLL 139
G L +++C R L G W+ V+ + P LS L
Sbjct: 196 GVLGGTGDSLGVSRSCLRGLGLFQGEWVWVAQARESSNTSQPHLARVQVLEPRWDLSDRL 255
Query: 140 RPQPEPQQEPVLITMATVVLTVLTHTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGP 199
P P EP+ +A V T+ + + +G+ + + P + + SL PGP
Sbjct: 256 GPGSGPLGEPLADGLALVPATLAFNLGCDPLEMGELRIQRYLEGSIAPEDKGSCSLLPGP 315
Query: 200 P 200
P
Sbjct: 316 P 316
>gi|38569493 potassium voltage-gated channel, subfamily H
(eag-related), member 3 [Homo sapiens]
Length = 1083
Score = 38.5 bits (88), Expect = 0.012
Identities = 52/204 (25%), Positives = 64/204 (31%), Gaps = 41/204 (20%)
Query: 35 GKGLAKRPGALLLRQGPGEPPPR--------------PDLDPELYLSVHDPAGALQAAFR 80
G+G R GAL GP PP PDL P + + D G+ Q F
Sbjct: 781 GRGRPGRAGALKAEAGPSAPPRALEGLRLPPMPWNVPPDLSPRVVDGIEDGCGSDQPKF- 839
Query: 81 RYPRGAPAPHCEMSRFVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLR 140
+ G P C S P P SGL + P + + V LS +
Sbjct: 840 SFRVGQSGPECSSS---PSPGP---ESGLLTVPHGPSEARNTDTLDKLRQAVTELSEQVL 893
Query: 141 PQPEPQQEPVLITMATVVLTVLTHTPAPRVR-----------LGQDALLDL---SFAYMP 186
E Q L +VL P PR L Q +D S+ P
Sbjct: 894 QMREGLQS--LRQAVQLVLAPHREGPCPRASGEGPCPASTSGLLQPLCVDTGASSYCLQP 951
Query: 187 PTSEAASSL----APGPPPFGLEW 206
P S PGPPP W
Sbjct: 952 PAGSVLSGTWPHPRPGPPPLMAPW 975
>gi|239752152 PREDICTED: hypothetical protein XP_002348153 [Homo
sapiens]
Length = 264
Score = 37.7 bits (86), Expect = 0.021
Identities = 61/256 (23%), Positives = 89/256 (34%), Gaps = 55/256 (21%)
Query: 149 PVLITMATVVL-----TVLTHTPAPRVRLGQDALLDLS-------------FAYMPPTSE 190
P+L+T+ T +VLT P+ GQ + S + +P T+
Sbjct: 31 PLLLTLLTHCAGSWAQSVLTQPPSASGTPGQRVTISCSGSSSNIGSNTVNWYQQLPGTAP 90
Query: 191 AASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWDDDEPWGPW 250
+ P G+ R G A GL + E AAWDD
Sbjct: 91 KLLIYSNNQRPSGVPDRFSGSKSGTSASLAISGLQSE----DEADYYCAAWDDSL----- 141
Query: 251 TGNGTFWLPTVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAP 310
NG PT F GT L + P VTL PP + A A
Sbjct: 142 --NG----PTCWVFGGGTKLTVLGQPKAAPSVTLF-----PPSSEELQANKAT------- 183
Query: 311 PELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPP 370
L+CL+S FYP G + V W+ P + + S+ + S +L P
Sbjct: 184 --LVCLISDFYP-GAVTVAWKADSSPVKAGVET------TTPSKQSNNKYAASSYLSLTP 234
Query: 371 VTTEQHGARYACRIHH 386
+ H + Y+C++ H
Sbjct: 235 EQWKSHRS-YSCQVTH 249
>gi|17986005 major histocompatibility complex, class II, DR beta 3
precursor [Homo sapiens]
Length = 266
Score = 36.6 bits (83), Expect = 0.047
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PQVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L + D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVTSALTVEWRARSESAQSKMLSG 231
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 232 ------VGGFVLGLLFLG 243
>gi|239758092 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain [Homo sapiens]
Length = 253
Score = 36.6 bits (83), Expect = 0.047
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 113 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 162
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L + D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 163 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSG 218
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 219 ------VGGFVLGLLFLG 230
>gi|239748785 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-9 beta chain [Homo sapiens]
Length = 266
Score = 36.6 bits (83), Expect = 0.047
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L + D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSG 231
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 232 ------VGGFVLGLLFLG 243
>gi|239740745 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 36.6 bits (83), Expect = 0.047
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L + D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSG 231
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 232 ------VGGFVLGLLFLG 243
>gi|239740743 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 36.6 bits (83), Expect = 0.047
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 124 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 173
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L + D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 174 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSG 229
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 230 ------VGGFVLGLLFLG 241
>gi|239740695 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 1 [Homo sapiens]
Length = 266
Score = 36.6 bits (83), Expect = 0.047
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L + D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSG 231
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 232 ------VGGFVLGLLFLG 243
>gi|239740693 PREDICTED: similar to HLA class II histocompatibility
antigen, DRB1-7 beta chain isoform 2 [Homo sapiens]
Length = 264
Score = 36.6 bits (83), Expect = 0.047
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 24/138 (17%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 124 PEVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 173
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPS----LPASGRSAEVTLEVAGLSG 407
L + D + L+ P + G Y C++ HPS L R+ + + LSG
Sbjct: 174 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSVMSPLTVEWRARSESAQSKMLSG 229
Query: 408 PSLEDSVGLFLSAFLLLG 425
VG F+ L LG
Sbjct: 230 ------VGGFVLGLLFLG 241
>gi|239740855 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 1 [Homo sapiens]
Length = 267
Score = 36.2 bits (82), Expect = 0.062
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 127 PQVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 176
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLSGPS-- 409
L + D + L+ P + G Y C++ HPS+ ++ +T+E + S +
Sbjct: 177 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV-----TSPLTVEWSARSESAQS 227
Query: 410 -LEDSVGLFLSAFLLLG 425
+ VG F+ L LG
Sbjct: 228 KMLSGVGGFVLGLLFLG 244
>gi|239740853 PREDICTED: similar to major histocompatibility
complex, class II, DR beta 3 isoform 2 [Homo sapiens]
Length = 266
Score = 36.2 bits (82), Expect = 0.062
Identities = 37/137 (27%), Positives = 62/137 (45%), Gaps = 22/137 (16%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
P+V++ PA + P + L+C VS FYP G +EV W G Q+ + +
Sbjct: 126 PQVTVYPA---KTQPLQHHNLLVCSVSGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPASGRSAEVTLEVAGLSGPS-- 409
L + D + L+ P + G Y C++ HPS+ ++ +T+E + S +
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSV-----TSPLTVEWSARSESAQS 226
Query: 410 -LEDSVGLFLSAFLLLG 425
+ VG F+ L LG
Sbjct: 227 KMLSGVGGFVLGLLFLG 243
>gi|239748415 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 35.8 bits (81), Expect = 0.081
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P +++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLA 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|239742343 PREDICTED: hypothetical protein XP_002342497 [Homo
sapiens]
Length = 208
Score = 35.8 bits (81), Expect = 0.081
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P +++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLA 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|24797076 major histocompatibility complex, class II, DP beta 1
precursor [Homo sapiens]
Length = 258
Score = 35.4 bits (80), Expect = 0.11
Identities = 32/112 (28%), Positives = 54/112 (48%), Gaps = 16/112 (14%)
Query: 278 LQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPG 337
L G +TL+ V P+V++ P+ + P + L+C V+ FYP G ++V W L G
Sbjct: 112 LGGPMTLQRRVQ--PRVNVSPS---KKGPLQHHNLLVCHVTDFYP-GSIQVRWFLNG--- 162
Query: 338 GRSQKAEGQRWLSALRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSL 389
++ G + +R+ D + + L+ P Q G Y C++ H SL
Sbjct: 163 --QEETAGVVSTNLIRN-GDWTFQILVMLEMTP----QQGDVYTCQVEHTSL 207
>gi|239754327 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 35.0 bits (79), Expect = 0.14
Identities = 96/422 (22%), Positives = 135/422 (31%), Gaps = 71/422 (16%)
Query: 42 PGALLLRQGPGEPPPRPDLDPEL------YLSVHDPAGALQAAFRRYPRGAPAPHCEMSR 95
P L P PPP P L P + H PAG + P P P+
Sbjct: 392 PAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPE 451
Query: 96 FVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQE-----PV 150
A W P+Q + A + LS P PQ + P
Sbjct: 452 NTASSAPVDWRD---PSQMEKLRNELAAYLCGSRREDRFLSHRPGPTVAPQSKEGKKGPR 508
Query: 151 LITMATVVLTVLTHTP--APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRR 208
L T++ TP P LG +L + A P + + P P +
Sbjct: 509 LPEKETLLSLPAKDTPPGVPEKSLGGSSLTETEAA--PSLTLPSVDYIPQDSPTPSVRQI 566
Query: 209 QHLGKGHLLLAATP------GLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQ 262
++ + L AA G P + G + DDD+ P N
Sbjct: 567 RNELEARLSSAAEKEAKPSIGSLPPKPRLEGGRICENGADDDKLSKPVAKN--------L 618
Query: 263 PFQEGTYLATIHL-------PYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPP---- 311
P Q T L T L P + + T E A+ PPK +L PAT +A G A P
Sbjct: 619 PPQSTTLLPTTSLQPKAMLGPAIPPKATPEPAI--PPKATLWPATPPKATLGPATPLKAT 676
Query: 312 ------------ELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGS 359
+ + P+ ++ E GP G+ +K Q + + +GS
Sbjct: 677 SGPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPSQARGEGS 736
Query: 360 VSLSGHLQPP--------PVTTEQHGARYACRIHHPSLPASGRSAEV-----TLEVAGLS 406
S + L P T G C ++ P S S EV TL G +
Sbjct: 737 PSEATRLPTQGARSSAAFPPKTSPGGGEVPC-LYKPHCHQSSLSREVAVVMPTLARGGAA 795
Query: 407 GP 408
GP
Sbjct: 796 GP 797
>gi|239753856 PREDICTED: hypothetical protein [Homo sapiens]
Length = 208
Score = 35.0 bits (79), Expect = 0.14
Identities = 25/70 (35%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Query: 39 AKRPGALLLRQGPGEPPPRPDLDPELYLSVHDPAG-ALQAA---FRRYPRGAPAPHCEMS 94
A R G + +G E PP P L PEL + +P+G A+Q++ FRR P P ++
Sbjct: 67 ADREGEREVLRGQRESPPPPQLPPEL---LTNPSGSAIQSSPSRFRRVPADNAGPRRQLP 123
Query: 95 RFVPLPASAK 104
+ VPL A+
Sbjct: 124 KGVPLRPGAE 133
>gi|239748855 PREDICTED: chromosome 6 open reading frame 132 [Homo
sapiens]
Length = 1188
Score = 35.0 bits (79), Expect = 0.14
Identities = 96/422 (22%), Positives = 135/422 (31%), Gaps = 71/422 (16%)
Query: 42 PGALLLRQGPGEPPPRPDLDPEL------YLSVHDPAGALQAAFRRYPRGAPAPHCEMSR 95
P L P PPP P L P + H PAG + P P P+
Sbjct: 392 PAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPE 451
Query: 96 FVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQE-----PV 150
A W P+Q + A + LS P PQ + P
Sbjct: 452 NTASSAPVDWRD---PSQMEKLRNELAAYLCGSRREDRFLSHRPGPTVAPQSKEGKKGPR 508
Query: 151 LITMATVVLTVLTHTP--APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRR 208
L T++ TP P LG +L + A P + + P P +
Sbjct: 509 LPEKETLLSLPAKDTPPGVPEKSLGGSSLTETEAA--PSLTLPSVDYIPQDSPTPSVRQI 566
Query: 209 QHLGKGHLLLAATP------GLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQ 262
++ + L AA G P + G + DDD+ P N
Sbjct: 567 RNELEARLSSAAEKEAKPSIGSLPPKPRLEGGRICENGADDDKLSKPVAKN--------L 618
Query: 263 PFQEGTYLATIHL-------PYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPP---- 311
P Q T L T L P + + T E A+ PPK +L PAT +A G A P
Sbjct: 619 PPQSTTLLPTTSLQPKAMLGPAIPPKATPEPAI--PPKATLWPATPPKATLGPATPLKAT 676
Query: 312 ------------ELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGS 359
+ + P+ ++ E GP G+ +K Q + + +GS
Sbjct: 677 SGPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPSQARGEGS 736
Query: 360 VSLSGHLQPP--------PVTTEQHGARYACRIHHPSLPASGRSAEV-----TLEVAGLS 406
S + L P T G C ++ P S S EV TL G +
Sbjct: 737 PSEATRLPTQGARSSAAFPPKTSPGGGEVPC-LYKPHCHQSSLSREVAVVMPTLARGGAA 795
Query: 407 GP 408
GP
Sbjct: 796 GP 797
>gi|239742884 PREDICTED: hypothetical protein LOC647024 [Homo
sapiens]
Length = 1188
Score = 35.0 bits (79), Expect = 0.14
Identities = 96/422 (22%), Positives = 135/422 (31%), Gaps = 71/422 (16%)
Query: 42 PGALLLRQGPGEPPPRPDLDPEL------YLSVHDPAGALQAAFRRYPRGAPAPHCEMSR 95
P L P PPP P L P + H PAG + P P P+
Sbjct: 392 PAPPLPPPAPPLPPPAPPLPPAAPPLPCAQKAAHPPAGFTKTPKSSSPALKPKPNPPSPE 451
Query: 96 FVPLPASAKWASGLTPAQNCPRALDGAWLMVSISSPVLSLSSLLRPQPEPQQE-----PV 150
A W P+Q + A + LS P PQ + P
Sbjct: 452 NTASSAPVDWRD---PSQMEKLRNELAAYLCGSRREDRFLSHRPGPTVAPQSKEGKKGPR 508
Query: 151 LITMATVVLTVLTHTP--APRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRR 208
L T++ TP P LG +L + A P + + P P +
Sbjct: 509 LPEKETLLSLPAKDTPPGVPEKSLGGSSLTETEAA--PSLTLPSVDYIPQDSPTPSVRQI 566
Query: 209 QHLGKGHLLLAATP------GLNGQMPAAQEGAVAFAAWDDDEPWGPWTGNGTFWLPTVQ 262
++ + L AA G P + G + DDD+ P N
Sbjct: 567 RNELEARLSSAAEKEAKPSIGSLPPKPRLEGGRICENGADDDKLSKPVAKN--------L 618
Query: 263 PFQEGTYLATIHL-------PYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPP---- 311
P Q T L T L P + + T E A+ PPK +L PAT +A G A P
Sbjct: 619 PPQSTTLLPTTSLQPKAMLGPAIPPKATPEPAI--PPKATLWPATPPKATLGPATPLKAT 676
Query: 312 ------------ELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSALRHHSDGS 359
+ + P+ ++ E GP G+ +K Q + + +GS
Sbjct: 677 SGPTTPLKATSGPAIASTATTLPTTTSQLMAEKDSGPAGQPEKPASQEVSTPSQARGEGS 736
Query: 360 VSLSGHLQPP--------PVTTEQHGARYACRIHHPSLPASGRSAEV-----TLEVAGLS 406
S + L P T G C ++ P S S EV TL G +
Sbjct: 737 PSEATRLPTQGARSSAAFPPKTSPGGGEVPC-LYKPHCHQSSLSREVAVVMPTLARGGAA 795
Query: 407 GP 408
GP
Sbjct: 796 GP 797
>gi|52630344 major histocompatibility complex, class II, DR beta 4
precursor [Homo sapiens]
Length = 266
Score = 34.7 bits (78), Expect = 0.18
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 28/140 (20%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C V+ FYP G +EV W G Q+ + +
Sbjct: 126 PKVTVYPS---KTQPLQHHNLLVCSVNGFYP-GSIEVRWFRNG------QEEKAGVVSTG 175
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPA------SGRSAEVTLEVAGL 405
L + D + L+ P + G Y C++ HPS+ + S RS ++ L
Sbjct: 176 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKM--L 229
Query: 406 SGPSLEDSVGLFLSAFLLLG 425
SG VG F+ L LG
Sbjct: 230 SG------VGGFVLGLLFLG 243
>gi|239758090 PREDICTED: major histocompatibility complex, class II,
DR beta 4 [Homo sapiens]
Length = 278
Score = 34.7 bits (78), Expect = 0.18
Identities = 39/140 (27%), Positives = 61/140 (43%), Gaps = 28/140 (20%)
Query: 292 PKVSLMPATLARAAPGEAPPELLCLVSHFYPSGGLEVEWELRGGPGGRSQKAEGQRWLSA 351
PKV++ P+ + P + L+C V+ FYP G +EV W G Q+ + +
Sbjct: 138 PKVTVYPS---KTQPLQHHNLLVCSVNGFYP-GSIEVRWFRNG------QEEKAGVVSTG 187
Query: 352 LRHHSDGSVSLSGHLQPPPVTTEQHGARYACRIHHPSLPA------SGRSAEVTLEVAGL 405
L + D + L+ P + G Y C++ HPS+ + S RS ++ L
Sbjct: 188 LIQNGDWTFQTLVMLETVP----RSGEVYTCQVEHPSMMSPLTVQWSARSESAQSKM--L 241
Query: 406 SGPSLEDSVGLFLSAFLLLG 425
SG VG F+ L LG
Sbjct: 242 SG------VGGFVLGLLFLG 255
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.135 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,658,286
Number of Sequences: 37866
Number of extensions: 1348809
Number of successful extensions: 4925
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 121
Number of HSP's that attempted gapping in prelim test: 4833
Number of HSP's gapped (non-prelim): 216
length of query: 448
length of database: 18,247,518
effective HSP length: 106
effective length of query: 342
effective length of database: 14,233,722
effective search space: 4867932924
effective search space used: 4867932924
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.