Guide to the Human Genome
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Search of human proteins with 27436873

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27436873 SNF2 histone linker PHD RING helicase isoform b
[Homo sapiens]
         (1659 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Hom...  3361   0.0  
gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Ho...  3355   0.0  
gi|40807471 transcription termination factor, RNA polymerase II ...   113   1e-24
gi|21071052 helicase-like transcription factor [Homo sapiens]         111   7e-24
gi|21071054 helicase-like transcription factor [Homo sapiens]         111   7e-24
gi|58331268 excision repair protein ERCC6-like [Homo sapiens]          79   3e-14
gi|21914927 helicase, lymphoid-specific [Homo sapiens]                 74   9e-13
gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo s...    69   3e-11
gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription facto...    69   4e-11
gi|24308089 chromodomain helicase DNA binding protein 5 [Homo sa...    68   8e-11
gi|58219008 RAD26L hypothetical protein [Homo sapiens]                 67   1e-10
gi|21071058 SWI/SNF-related matrix-associated actin-dependent re...    66   2e-10
gi|164419749 SWI/SNF-related matrix-associated actin-dependent r...    65   7e-10
gi|21071044 SWI/SNF-related matrix-associated actin-dependent re...    65   7e-10
gi|51599156 chromodomain helicase DNA binding protein 4 [Homo sa...    64   1e-09
gi|4557565 excision repair cross-complementing rodent repair def...    64   2e-09
gi|38708321 INO80 complex homolog 1 [Homo sapiens]                     63   2e-09
gi|118421089 chromodomain helicase DNA binding protein 2 isoform...    62   4e-09
gi|52630326 chromodomain helicase DNA binding protein 3 isoform ...    62   6e-09
gi|52630322 chromodomain helicase DNA binding protein 3 isoform ...    62   6e-09
gi|158420731 chromodomain helicase DNA binding protein 3 isoform...    62   6e-09
gi|146219843 Snf2-related CBP activator protein [Homo sapiens]         61   8e-09
gi|190358536 SWI/SNF-related, matrix-associated actin-dependent ...    61   1e-08
gi|190358534 SWI/SNF-related, matrix-associated actin-dependent ...    61   1e-08
gi|190358532 SWI/SNF-related, matrix-associated actin-dependent ...    61   1e-08
gi|4885377 histone cluster 1, H1d [Homo sapiens]                       60   1e-08
gi|148612870 chromodomain helicase DNA binding protein 1-like [H...    60   1e-08
gi|4885381 histone cluster 1, H1b [Homo sapiens]                       59   4e-08
gi|68299795 chromodomain helicase DNA binding protein 1 [Homo sa...    58   7e-08
gi|4885379 histone cluster 1, H1e [Homo sapiens]                       57   1e-07

>gi|27436873 SNF2 histone linker PHD RING helicase isoform b [Homo
            sapiens]
          Length = 1659

 Score = 3361 bits (8714), Expect = 0.0
 Identities = 1659/1659 (100%), Positives = 1659/1659 (100%)

Query: 1    MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS 60
            MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS
Sbjct: 1    MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS 60

Query: 61   LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT 120
            LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT
Sbjct: 61   LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT 120

Query: 121  LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS 180
            LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS
Sbjct: 121  LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS 180

Query: 181  FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL 240
            FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL
Sbjct: 181  FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL 240

Query: 241  MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300
            MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL
Sbjct: 241  MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300

Query: 301  IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360
            IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP
Sbjct: 301  IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360

Query: 361  NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK 420
            NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK
Sbjct: 361  NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK 420

Query: 421  LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR 480
            LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR
Sbjct: 421  LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR 480

Query: 481  SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK 540
            SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK
Sbjct: 481  SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK 540

Query: 541  SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH 600
            SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH
Sbjct: 541  SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH 600

Query: 601  CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE 660
            CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE
Sbjct: 601  CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE 660

Query: 661  CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI 720
            CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI
Sbjct: 661  CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI 720

Query: 721  ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN 780
            ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN
Sbjct: 721  ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN 780

Query: 781  YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840
            YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG
Sbjct: 781  YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840

Query: 841  INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
            INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL
Sbjct: 841  INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900

Query: 901  WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS 960
            WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS
Sbjct: 901  WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS 960

Query: 961  SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK 1020
            SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK
Sbjct: 961  SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK 1020

Query: 1021 CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA 1080
            CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA
Sbjct: 1021 CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA 1080

Query: 1081 THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL 1140
            THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL
Sbjct: 1081 THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL 1140

Query: 1141 QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ 1200
            QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ
Sbjct: 1141 QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ 1200

Query: 1201 MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK 1260
            MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK
Sbjct: 1201 MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK 1260

Query: 1261 LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE 1320
            LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE
Sbjct: 1261 LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE 1320

Query: 1321 FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380
            FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV
Sbjct: 1321 FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380

Query: 1381 LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA 1440
            LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA
Sbjct: 1381 LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA 1440

Query: 1441 RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA 1500
            RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA
Sbjct: 1441 RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA 1500

Query: 1501 NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA 1560
            NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA
Sbjct: 1501 NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA 1560

Query: 1561 QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG 1620
            QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG
Sbjct: 1561 QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG 1620

Query: 1621 RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSIYI 1659
            RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSIYI
Sbjct: 1621 RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERSIYI 1659


>gi|111548666 SNF2 histone linker PHD RING helicase isoform a [Homo
            sapiens]
          Length = 1687

 Score = 3355 bits (8699), Expect = 0.0
 Identities = 1656/1656 (100%), Positives = 1656/1656 (100%)

Query: 1    MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS 60
            MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS
Sbjct: 1    MSSRRKRAPPVRVDEEKRQQLHWNMHEDRRNEPIIISDDDEQPCPGSDTSSAHYIILSDS 60

Query: 61   LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT 120
            LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT
Sbjct: 61   LKEEVAHRDKKRCSKVVSFSKPIEKEETVGIFSPLSVKLNIVISPYHFDNSWKAFLGELT 120

Query: 121  LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS 180
            LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS
Sbjct: 121  LQLLPAQSLIENFSERSITLMSSESSNQFLIYVHSKGEDVEKQKKEPMSICDKGILVESS 180

Query: 181  FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL 240
            FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL
Sbjct: 181  FSGEMLEDLGWLQKKRRIKLYQKPEGNHIIKVGIYLLEAGLAKLDFLSDANSRMKKFNQL 240

Query: 241  MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300
            MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL
Sbjct: 241  MKKVMEKLHNSIIPDVLEEDEDDPESEPEGQDIDELYHFVKQTHQQETQSIQVDVQHPAL 300

Query: 301  IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360
            IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP
Sbjct: 301  IPVLRPYQREAVNWMLQQECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGCIIREYP 360

Query: 361  NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK 420
            NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK
Sbjct: 361  NSGPQLLGGILADEMGLGKTVEVLALILTHTRQDVKQDALTLPEGKVVNYFIPSHYFGGK 420

Query: 421  LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR 480
            LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR
Sbjct: 421  LKKTEIQNIEFEPKEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNR 480

Query: 481  SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK 540
            SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK
Sbjct: 481  SLLKRMLKCLIFEGLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRK 540

Query: 541  SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH 600
            SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH
Sbjct: 541  SGNKDTDSEYLPSDTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKSQPFINPDSQGH 600

Query: 601  CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE 660
            CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE
Sbjct: 601  CPATSDSGITDVAMSKSTCISEFNQEHETEDCAESLNHADSDVPPSNTMSPFNTSDYRFE 660

Query: 661  CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI 720
            CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI
Sbjct: 661  CICGELDQIDRKPRVQCLKCHLWQHAKCVNYDEKNLKIKPFYCPHCLVAMEPVSTRATLI 720

Query: 721  ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN 780
            ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN
Sbjct: 721  ISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRSELN 780

Query: 781  YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840
            YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG
Sbjct: 781  YVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQRLSG 840

Query: 841  INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900
            INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL
Sbjct: 841  INRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKIL 900

Query: 901  WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS 960
            WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS
Sbjct: 901  WRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISDWALKLS 960

Query: 961  SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK 1020
            SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK
Sbjct: 961  SLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKK 1020

Query: 1021 CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA 1080
            CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA
Sbjct: 1021 CGTECEEAHRQLVCALNGLAGIHIIKGEYALAAELYREVLRSSEEHKGKLKTDSLQRLHA 1080

Query: 1081 THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL 1140
            THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL
Sbjct: 1081 THNLMELLIARHPGIPPTLRDGRLEEEAKQLREHYMSKCNTEVAEAQQALYPVQQTIHEL 1140

Query: 1141 QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ 1200
            QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ
Sbjct: 1141 QRKIHSNSPWWLNVIHRAIEFTIDEELVQRVRNEITSNYKQQTGKLSMSEKGLQFLLTTQ 1200

Query: 1201 MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK 1260
            MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK
Sbjct: 1201 MEELNKCQKLVREAVKNLEGPPSRNVIESATVCHLRPARLPLNCCVFCKADELFTEYESK 1260

Query: 1261 LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE 1320
            LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE
Sbjct: 1261 LFSNTVKGQTAIFEEMIEDEEGLVDDRAPTTTRGLWAISETERSMKAILSFAKSHRFDVE 1320

Query: 1321 FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380
            FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV
Sbjct: 1321 FVDEGSTSMDLFEAWKKEYKLLHEYWMALRNRVSAVDELAMATERLRVRDPREPKPNPPV 1380

Query: 1381 LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA 1440
            LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA
Sbjct: 1381 LHIIEPHEVEQNRIKLLNDKAVATSQLQKKLGQLLYLTNLEKSQDKTSGGVNPEPCPICA 1440

Query: 1441 RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA 1500
            RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA
Sbjct: 1441 RQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISYVFTSEKA 1500

Query: 1501 NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA 1560
            NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA
Sbjct: 1501 NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFA 1560

Query: 1561 QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG 1620
            QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG
Sbjct: 1561 QISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIG 1620

Query: 1621 RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERS 1656
            RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERS
Sbjct: 1621 RVHRIGQTKPTIVHRFLIKATIEERMQAMLKTAERS 1656


>gi|40807471 transcription termination factor, RNA polymerase II [Homo
            sapiens]
          Length = 1162

 Score =  113 bits (283), Expect = 1e-24
 Identities = 95/337 (28%), Positives = 148/337 (43%), Gaps = 44/337 (13%)

Query: 714  STRATLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYD 773
            ++  TLII P+S+ H W +E+ + V S+ LRV +Y G  +D   +   L+  DIVI TY 
Sbjct: 640  TSHGTLIICPASLIHHWKNEVEKRVNSNKLRVYLYHGPNRDS--RARVLSTYDIVITTYS 697

Query: 774  VLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAE 833
            ++  E+       +N ++              +PL+ + W RI LDEA  V+ P V+ + 
Sbjct: 698  LVAKEIP------TNKQEAEIPGANLNVEGTSTPLLRIAWARIILDEAHNVKNPRVQTSI 751

Query: 834  MAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQHLY 893
               +L    RW ++GTP+Q  L D++ L+ FL   P+   + W R       KK  + L 
Sbjct: 752  AVCKLQACARWAVTGTPIQNNLLDMYSLLKFLRCSPFDEFNLW-RSQVDNGSKKGGERL- 809

Query: 894  SFIAKILWRSAKKDVIDQ-----IQIPPQTEEIHWLHFSPVERHFYH------------- 935
            S + K L     KD +D      + +P +  ++H L  S  E   Y+             
Sbjct: 810  SILTKSLLLRRTKDQLDSTGRPLVILPQRKFQLHHLKLSEDEETVYNVFFARSRSALQSY 869

Query: 936  -RQHEV-CCQDVVVKLRKISDWALKLSSLD----------RRTVTSILYPLLRLRQACCH 983
             ++HE    Q         S  AL+  S +          R +   IL  LLRLRQ CCH
Sbjct: 870  LKRHESRGNQSGRSPNNPFSRVALEFGSEEPRHSEAADSPRSSTVHILSQLLRLRQCCCH 929

Query: 984  PQAVRGEFLPLQKSFEQSTFS----FSTMTMEELLTS 1016
               ++    P++   E    S     S +T+ EL  S
Sbjct: 930  LSLLKSALDPMELKGEGLVLSLEEQLSALTLSELRDS 966



 Score = 76.3 bits (186), Expect = 2e-13
 Identities = 39/137 (28%), Positives = 74/137 (54%), Gaps = 3/137 (2%)

Query: 1513 STKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS---RVKTFQ 1569
            STK+ +++  L  IQ      K+++ S W ++L +++  L  + + +A I      K   
Sbjct: 990  STKISSLLAELEAIQRNSASQKSVIVSQWTNMLKVVALHLKKHGLTYATIDGSVNPKQRM 1049

Query: 1570 ENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTK 1629
            + + AF       ++L+ L  G  GL +    H+ L++   NP+ E QA  R++R+GQ K
Sbjct: 1050 DLVEAFNHSRGPQVMLISLLAGGVGLNLTGGNHLFLLDMHWNPSLEDQACDRIYRVGQQK 1109

Query: 1630 PTIVHRFLIKATIEERM 1646
              ++HRF+ + T+EE++
Sbjct: 1110 DVVIHRFVCEGTVEEKI 1126



 Score = 43.5 bits (101), Expect = 0.002
 Identities = 32/104 (30%), Positives = 50/104 (48%), Gaps = 27/104 (25%)

Query: 319 ECFRSSPATESALHFLWREIVTSEGLKLYYNPYTGC----IIREYPNS--GPQLL----- 367
           +C+R     +  +H +W+  +TSE +   +     C    ++ E P     P LL     
Sbjct: 521 QCYRGH-TNQDHVHAVWK--ITSEAIGQLHRSLESCPGETVVAEDPAGLKVPLLLHQKQA 577

Query: 368 -------------GGILADEMGLGKTVEVLALILTHTRQDVKQD 398
                        GGILAD+MGLGKT+ ++ALILT   Q+ K++
Sbjct: 578 LAWLLWRESQKPQGGILADDMGLGKTLTMIALILTQKNQEKKEE 621


>gi|21071052 helicase-like transcription factor [Homo sapiens]
          Length = 1009

 Score =  111 bits (277), Expect = 7e-24
 Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 39/275 (14%)

Query: 716 RATLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDV 774
           R TLII P S+   W+D+  +H++S   L   VY G   D   +P  L++QDIV+ TY++
Sbjct: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG--PDRIREPALLSKQDIVLTTYNI 533

Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
           L          H     G             SPL ++ W R+ LDE   +  P  +  + 
Sbjct: 534 LT---------HDYGTKG------------DSPLHSIRWLRVILDEGHAIRNPNAQQTKA 572

Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNP---QH 891
              L    RW ++GTP+Q  L+DL+ L+ FL ++P+  + WW R + RP    +    + 
Sbjct: 573 VLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRR 632

Query: 892 LYSFIAKILWRSAKKDVI---DQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948
           L S I  I  R  K   I     +++P +   I  +  S  ER  Y     V  +     
Sbjct: 633 LQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY---QSVKNEGRATI 689

Query: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 983
            R  ++  +     D      +L  LLRLRQ CCH
Sbjct: 690 GRYFNEGTVLAHYAD------VLGLLLRLRQICCH 718



 Score = 94.4 bits (233), Expect = 8e-19
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 1434 EPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493
            E C IC   L     +  C H FC  CI  +I+     + +   KC +CR       +  
Sbjct: 758  EECAICLDSLTVP-VITHCAHVFCKPCICQVIQ-----NEQPHAKCPLCRNDIHEDNLLE 811

Query: 1494 VFTSEKA-NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552
                E A + E+   ++ + S+K+ A++  L  ++ ++P  K+LV S +   L +I   L
Sbjct: 812  CPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871

Query: 1553 TDNNMEF-------AQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLL 1605
              +   F       AQ  RV++ Q   +     P   I+LL L  G  GL +  A+ V L
Sbjct: 872  KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSP--TIMLLSLKAGGVGLNLSAASRVFL 929

Query: 1606 VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646
            ++P  NPA E Q   R HR+GQ +  I+ +F++K ++EE M
Sbjct: 930  MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENM 970



 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 31/148 (20%)

Query: 272 DIDELYHFVKQ---THQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATE 328
           + D+L+  +K+   TH+ E           A+   L P+Q++A+ WM+ +E  +  P   
Sbjct: 213 EFDKLFEDLKEDDKTHEMEPAE--------AIETPLLPHQKQALAWMVSRENSKELPP-- 262

Query: 329 SALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALIL 388
                 W +        LYYN  T    ++ P +   + GGILAD+MGLGKT+  +A+IL
Sbjct: 263 -----FWEQ-----RNDLYYNTITNFSEKDRPEN---VHGGILADDMGLGKTLTAIAVIL 309

Query: 389 THTRQDVKQDALTLPEGKVVNYFIPSHY 416
           T+       D   LP  +V    +   Y
Sbjct: 310 TNF-----HDGRPLPIERVKKNLLKKEY 332


>gi|21071054 helicase-like transcription factor [Homo sapiens]
          Length = 1009

 Score =  111 bits (277), Expect = 7e-24
 Identities = 81/275 (29%), Positives = 122/275 (44%), Gaps = 39/275 (14%)

Query: 716 RATLIISPSSICHQWVDEINRHVRSS-SLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDV 774
           R TLII P S+   W+D+  +H++S   L   VY G   D   +P  L++QDIV+ TY++
Sbjct: 476 RTTLIICPLSVLSNWIDQFGQHIKSDVHLNFYVYYG--PDRIREPALLSKQDIVLTTYNI 533

Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
           L          H     G             SPL ++ W R+ LDE   +  P  +  + 
Sbjct: 534 LT---------HDYGTKG------------DSPLHSIRWLRVILDEGHAIRNPNAQQTKA 572

Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNP---QH 891
              L    RW ++GTP+Q  L+DL+ L+ FL ++P+  + WW R + RP    +    + 
Sbjct: 573 VLDLESERRWVLTGTPIQNSLKDLWSLLSFLKLKPFIDREWWHRTIQRPVTMGDEGGLRR 632

Query: 892 LYSFIAKILWRSAKKDVI---DQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVK 948
           L S I  I  R  K   I     +++P +   I  +  S  ER  Y     V  +     
Sbjct: 633 LQSLIKNITLRRTKTSKIKGKPVLELPERKVFIQHITLSDEERKIY---QSVKNEGRATI 689

Query: 949 LRKISDWALKLSSLDRRTVTSILYPLLRLRQACCH 983
            R  ++  +     D      +L  LLRLRQ CCH
Sbjct: 690 GRYFNEGTVLAHYAD------VLGLLLRLRQICCH 718



 Score = 94.4 bits (233), Expect = 8e-19
 Identities = 65/221 (29%), Positives = 105/221 (47%), Gaps = 16/221 (7%)

Query: 1434 EPCPICARQLGKQWAVLTCGHCFCNECISIIIEQYSVGSHRSSIKCAICRQTTSHKEISY 1493
            E C IC   L     +  C H FC  CI  +I+     + +   KC +CR       +  
Sbjct: 758  EECAICLDSLTVP-VITHCAHVFCKPCICQVIQ-----NEQPHAKCPLCRNDIHEDNLLE 811

Query: 1494 VFTSEKA-NQEEDIPVKGSHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKAL 1552
                E A + E+   ++ + S+K+ A++  L  ++ ++P  K+LV S +   L +I   L
Sbjct: 812  CPPEELARDSEKKSDMEWTSSSKINALMHALTDLRKKNPNIKSLVVSQFTTFLSLIEIPL 871

Query: 1553 TDNNMEF-------AQISRVKTFQENLSAFKRDPQINILLLPLHTGSNGLTIIEATHVLL 1605
              +   F       AQ  RV++ Q   +     P   I+LL L  G  GL +  A+ V L
Sbjct: 872  KASGFVFTRLDGSMAQKKRVESIQCFQNTEAGSP--TIMLLSLKAGGVGLNLSAASRVFL 929

Query: 1606 VEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646
            ++P  NPA E Q   R HR+GQ +  I+ +F++K ++EE M
Sbjct: 930  MDPAWNPAAEDQCFDRCHRLGQKQEVIITKFIVKDSVEENM 970



 Score = 52.8 bits (125), Expect = 3e-06
 Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 31/148 (20%)

Query: 272 DIDELYHFVKQ---THQQETQSIQVDVQHPALIPVLRPYQREAVNWMLQQECFRSSPATE 328
           + D+L+  +K+   TH+ E           A+   L P+Q++A+ WM+ +E  +  P   
Sbjct: 213 EFDKLFEDLKEDDKTHEMEPAE--------AIETPLLPHQKQALAWMVSRENSKELPP-- 262

Query: 329 SALHFLWREIVTSEGLKLYYNPYTGCIIREYPNSGPQLLGGILADEMGLGKTVEVLALIL 388
                 W +        LYYN  T    ++ P +   + GGILAD+MGLGKT+  +A+IL
Sbjct: 263 -----FWEQ-----RNDLYYNTITNFSEKDRPEN---VHGGILADDMGLGKTLTAIAVIL 309

Query: 389 THTRQDVKQDALTLPEGKVVNYFIPSHY 416
           T+       D   LP  +V    +   Y
Sbjct: 310 TNF-----HDGRPLPIERVKKNLLKKEY 332


>gi|58331268 excision repair protein ERCC6-like [Homo sapiens]
          Length = 1250

 Score = 79.3 bits (194), Expect = 3e-14
 Identities = 41/124 (33%), Positives = 74/124 (59%), Gaps = 4/124 (3%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF----QENLSAFKRDPQIN 1582
            +LRD G + LVFS  + +L+II + L + + +  +I    T     ++ ++ F+++   +
Sbjct: 471  RLRDEGHQTLVFSQSRQILNIIERLLKNRHFKTLRIDGTVTHLLEREKRINLFQQNKDYS 530

Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
            + LL    G  GLT+  AT V++ +P  NPA + QA+ RV+RIGQ +  +V+R +   T+
Sbjct: 531  VFLLTTQVGGVGLTLTAATRVVIFDPSWNPATDAQAVDRVYRIGQKENVVVYRLITCGTV 590

Query: 1643 EERM 1646
            EE++
Sbjct: 591  EEKI 594



 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 37/148 (25%), Positives = 67/148 (45%), Gaps = 25/148 (16%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQ--DIVIITYDVLR 776
           L+I P+++ + WV E  +   +  +RV  + G  KD   +     +Q   ++I TY +L 
Sbjct: 149 LLIMPTNLINTWVKEFIKW--TPGMRVKTFHGPSKDERTRNLNRIQQRNGVIITTYQMLI 206

Query: 777 SELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQ 836
           +          N +     R Q+             W  + LDEA  ++  + K+A  A+
Sbjct: 207 N----------NWQQLSSFRGQE-----------FVWDYVILDEAHKIKTSSTKSAICAR 245

Query: 837 RLSGINRWCISGTPVQRGLEDLFGLVVF 864
            +   NR  ++GTP+Q  L++L+ L  F
Sbjct: 246 AIPASNRLLLTGTPIQNNLQELWSLFDF 273



 Score = 35.4 bits (80), Expect = 0.46
 Identities = 14/20 (70%), Positives = 19/20 (95%)

Query: 368 GGILADEMGLGKTVEVLALI 387
           GGILAD+MGLGKTV+++A +
Sbjct: 117 GGILADDMGLGKTVQIIAFL 136


>gi|21914927 helicase, lymphoid-specific [Homo sapiens]
          Length = 838

 Score = 74.3 bits (181), Expect = 9e-13
 Identities = 39/123 (31%), Positives = 68/123 (55%), Gaps = 3/123 (2%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQE---NLSAFKRDPQINI 1583
            +L+  G K L+FS    +LDI+       +  F+++    ++ E   N+ +F  DP++ I
Sbjct: 610  ELKKRGHKVLLFSQMTSMLDILMDYCHLRDFNFSRLDGSMSYSEREKNMHSFNTDPEVFI 669

Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
             L+    G  G+ +  A  V++ +   NP  +LQA  R HRIGQTKP +V+R +   TI+
Sbjct: 670  FLVSTRAGGLGINLTAADTVIIYDSDWNPQSDLQAQDRCHRIGQTKPVVVYRLVTANTID 729

Query: 1644 ERM 1646
            +++
Sbjct: 730  QKI 732



 Score = 36.6 bits (83), Expect = 0.21
 Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 8/45 (17%)

Query: 351 YTGCIIREYPNSGPQLL--------GGILADEMGLGKTVEVLALI 387
           +TG ++R Y   G + L         GILADEMGLGKTV+ +A I
Sbjct: 218 FTGGVMRWYQVEGMEWLRMLWENGINGILADEMGLGKTVQCIATI 262



 Score = 36.2 bits (82), Expect = 0.27
 Identities = 29/135 (21%), Positives = 59/135 (43%), Gaps = 15/135 (11%)

Query: 813 WWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPY-- 870
           W  + +DE   ++    +     +R +  N+  ++GTP+Q  L +L+ L+ FL  + +  
Sbjct: 348 WKYLIVDEGHRIKNMKCRLIRELKRFNADNKLLLTGTPLQNNLSELWSLLNFLLPDVFDD 407

Query: 871 --CVKHWW--------VRLLYRPYCKKNPQH-LYSFIAKILWRSAKKDVIDQIQIPPQTE 919
               + W+           +     ++N  H L+  +   L R  K DV   +++PP+ E
Sbjct: 408 LKSFESWFDITSLSETAEDIIAKEREQNVLHMLHQILTPFLLRRLKSDV--ALEVPPKRE 465

Query: 920 EIHWLHFSPVERHFY 934
            + +   S  +  FY
Sbjct: 466 VVVYAPLSKKQEIFY 480


>gi|62860046 zinc finger, RAN-binding domain containing 3 [Homo
            sapiens]
          Length = 1079

 Score = 69.3 bits (168), Expect = 3e-11
 Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 3/134 (2%)

Query: 1520 VRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENL---SAFK 1576
            V+  +K+ L++   K LVF+    +L   ++A+ +N   + +I    +  E +   + F+
Sbjct: 326  VKDYIKMMLQNDSLKFLVFAHHLSMLQACTEAVIENKTRYIRIDGSVSSSERIHLVNQFQ 385

Query: 1577 RDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRF 1636
            +DP   + +L +     GLT   A+HV+  E   +P H  QA  R HRIGQ     +H  
Sbjct: 386  KDPDTRVAILSIQAAGQGLTFTAASHVVFAELYWDPGHIKQAEDRAHRIGQCSSVNIHYL 445

Query: 1637 LIKATIEERMQAML 1650
            +   T++  M  ML
Sbjct: 446  IANGTLDTLMWGML 459


>gi|27477070 BTAF1 RNA polymerase II, B-TFIID transcription
            factor-associated, 170kDa [Homo sapiens]
          Length = 1849

 Score = 68.9 bits (167), Expect = 4e-11
 Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 6/124 (4%)

Query: 1534 KALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF------QENLSAFKRDPQINILLLP 1587
            + L+F   + +LDI+   L   ++      R+            +S F  DP I++LLL 
Sbjct: 1646 RILIFCQLKSMLDIVEHDLLKPHLPSVTYLRLDGSIPPGQRHSIVSRFNNDPSIDVLLLT 1705

Query: 1588 LHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERMQ 1647
             H G  GL +  A  V+ VE   NP  +LQA+ R HRIGQ +   V+R + + T+EE++ 
Sbjct: 1706 THVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIM 1765

Query: 1648 AMLK 1651
             + K
Sbjct: 1766 GLQK 1769



 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 59/288 (20%), Positives = 115/288 (39%), Gaps = 49/288 (17%)

Query: 718  TLIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDIVIITYDVLRS 777
            +L++ P ++   WVDE+ +      L  L Y G   +     H +   ++++ +YDV+R+
Sbjct: 1329 SLVVCPPTLTGHWVDEVGKFCSREYLNPLHYTGPPTERIRLQHQVKRHNLIVASYDVVRN 1388

Query: 778  ELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQR 837
            ++++              RN K    I             LDE  +++    K ++  ++
Sbjct: 1389 DIDF-------------FRNIKFNYCI-------------LDEGHVIKNGKTKLSKAVKQ 1422

Query: 838  LSGINRWCISGTPVQRGLEDLFGLV-----VFLGIEPYCVKHWWVRLLYRPYCKKNPQH- 891
            L+   R  +SGTP+Q  + +L+ L       FLG E      +   +L     + + +  
Sbjct: 1423 LTANYRIILSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDARSSSREQ 1482

Query: 892  ---------LYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYH---RQHE 939
                     L+  +   L R  K+DV+    +PP+  + ++   SP++   Y    +   
Sbjct: 1483 EAGVLAMDALHRQVLPFLLRRMKEDVLQ--DLPPKIIQDYYCTLSPLQVQLYEDFAKSRA 1540

Query: 940  VCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
             C  D  V    +S+   +      +    +   L  LR+ C HP  V
Sbjct: 1541 KCDVDETVSSATLSE---ETEKPKLKATGHVFQALQYLRKLCNHPALV 1585



 Score = 31.2 bits (69), Expect = 8.7
 Identities = 47/186 (25%), Positives = 72/186 (38%), Gaps = 40/186 (21%)

Query: 332  HFLWREIVTSEGLKLYYNPYT-GCIIREYPNSGPQLLG--------GILADEMGLGKTVE 382
            HFL  +++  + L+ Y  P      +R+Y   G   L         GIL D+MGLGKT++
Sbjct: 1242 HFL-EQLLDGKKLENYKIPVPINAELRKYQQDGVNWLAFLNKYKLHGILCDDMGLGKTLQ 1300

Query: 383  VLALIL---THTRQDVKQ----DALTLPEGKVVNYFIPSHYFG--GKLKKTEIQNIEFEP 433
             + ++     H  Q+  +    + + LP   V    +  H+    GK    E  N    P
Sbjct: 1301 SICILAGDHCHRAQEYARSKLAECMPLPSLVVCPPTLTGHWVDEVGKFCSREYLN----P 1356

Query: 434  KEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLK---CL 490
                  P  R+ +   VK  N                +  YDV RN     R +K   C+
Sbjct: 1357 LHYTGPPTERIRLQHQVKRHN--------------LIVASYDVVRNDIDFFRNIKFNYCI 1402

Query: 491  IFEGLV 496
            + EG V
Sbjct: 1403 LDEGHV 1408


>gi|24308089 chromodomain helicase DNA binding protein 5 [Homo
            sapiens]
          Length = 1954

 Score = 67.8 bits (164), Expect = 8e-11
 Identities = 45/148 (30%), Positives = 74/148 (50%), Gaps = 6/148 (4%)

Query: 1510 GSHSTKVEAVVRTLMKI--QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKT 1567
            GS   K    +  L K+  +LRD G + L+FS    +LD++   L     ++ +I    T
Sbjct: 1016 GSSLVKSSGKLMLLQKMLKKLRDEGHRVLIFSQMTKMLDLLEDFLEYEGYKYERIDGGIT 1075

Query: 1568 F---QENLSAFKRD-PQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVH 1623
                QE +  F     Q    LL    G  G+ +  A  V++ +   NP +++QA  R H
Sbjct: 1076 GGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAH 1135

Query: 1624 RIGQTKPTIVHRFLIKATIEERMQAMLK 1651
            RIGQ K  +++RF+ +A++EER+  + K
Sbjct: 1136 RIGQNKKVMIYRFVTRASVEERITQVAK 1163



 Score = 41.6 bits (96), Expect = 0.006
 Identities = 53/234 (22%), Positives = 98/234 (41%), Gaps = 32/234 (13%)

Query: 808  LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
            L ++EW  + +DEA  ++    K   +        +  ++GTP+Q  LE+LF L+ FL  
Sbjct: 836  LGSIEWACLVVDEAHRLKNNQSKFFRVLNSYKIDYKLLLTGTPLQNNLEELFHLLNFLTP 895

Query: 868  EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
            E +     ++        +   + L+  +   + R  K DV     +P +TE I  +  S
Sbjct: 896  ERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK--NMPAKTELIVRVELS 953

Query: 928  PVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHP--- 984
             +++ +Y            +  R        L+S       S+L  ++ L++ C HP   
Sbjct: 954  QMQKKYYK----------FILTRNFE----ALNSKGGGNQVSLLNIMMDLKKCCNHPYLF 999

Query: 985  --QAVRGEFLPLQKSFEQSTF---SFSTMTMEELLTSLQKKCGTECEEAHRQLV 1033
               AV    LP   S++ S+    S   M ++++L  L+       +E HR L+
Sbjct: 1000 PVAAVEAPVLP-NGSYDGSSLVKSSGKLMLLQKMLKKLR-------DEGHRVLI 1045


>gi|58219008 RAD26L hypothetical protein [Homo sapiens]
          Length = 712

 Score = 67.4 bits (163), Expect = 1e-10
 Identities = 70/276 (25%), Positives = 120/276 (43%), Gaps = 28/276 (10%)

Query: 1396 LLNDKAVATSQLQKKLGQLLY--LTNLEKS--------QDKTSGGVNPEPCPICARQLGK 1445
            L   K +   QL KK  +++Y  LT+ +K+        +D T    + EPC   + Q  +
Sbjct: 380  LRRTKTLIKDQLPKKEDRMVYCSLTDFQKAVYQTVLETEDVTLILQSSEPCTCRSGQKRR 439

Query: 1446 QWAVLTCGHCFCNECISIIIEQY-----SVGSHRSSIKCAIC--RQTTSHKEI-SYVFTS 1497
                 T  H    E +  +   Y      V +H + ++ A    +Q T  K I   VF+ 
Sbjct: 440  NCCYKTNSH---GETVKTLYLSYLTVLQKVANHVALLQAASTSKQQETLIKRICDQVFSR 496

Query: 1498 --EKANQEEDIPVKGSHSTKVEAVVRTLMKI--QLRDPGAKALVFSTWQDVLDIISKALT 1553
              +   + +D   +     K    ++ L ++    R    K L+FS    +LD++ +   
Sbjct: 497  FPDFVQKSKDAAFETLSDPKYSGKMKVLQQLLNHCRKNRDKVLLFSFSTKLLDVLQQYCM 556

Query: 1554 DNNMEFAQISRVKTFQENLSA---FKRDPQINILLLPLHTGSNGLTIIEATHVLLVEPIL 1610
             + +++ ++      +E L     F     +NI L+    G  GL  + A  V+L +P  
Sbjct: 557  ASGLDYRRLDGSTKSEERLKIVKEFNSTQDVNICLVSTMAGGLGLNFVGANVVVLFDPTW 616

Query: 1611 NPAHELQAIGRVHRIGQTKPTIVHRFLIKATIEERM 1646
            NPA++LQAI R +RIGQ +   V R +   T+EE M
Sbjct: 617  NPANDLQAIDRAYRIGQCRDVKVLRLISLGTVEEIM 652



 Score = 45.8 bits (107), Expect = 3e-04
 Identities = 42/170 (24%), Positives = 72/170 (42%), Gaps = 43/170 (25%)

Query: 711 EPVSTRAT---LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQDI 767
           EP+S+ A    LI++P S+ + W DE++        RV V  G +KD  L      + +I
Sbjct: 201 EPLSSTAKKMFLIVAPLSVLYNWKDELDTW---GYFRVTVLHGNRKDNELIRVKQRKCEI 257

Query: 768 VIITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECP 827
            + TY+ LR  L+                           L ++EW  + +DEA  ++ P
Sbjct: 258 ALTTYETLRLCLD--------------------------ELNSLEWSAVIVDEAHRIKNP 291

Query: 828 TVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWV 877
             +  E+ + L    R  ++GT +Q  +++L           +CV  W V
Sbjct: 292 KARVTEVMKALKCNVRIGLTGTILQNNMKEL-----------WCVMDWAV 330



 Score = 34.7 bits (78), Expect = 0.79
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 14/63 (22%)

Query: 350 PYT-GCIIREYPNSGPQLLGG--------ILADEMGLGKTVEVLALILT-----HTRQDV 395
           PYT    +R+Y   G + L G        IL D+MGLGKTV+V++ +        TR+D+
Sbjct: 127 PYTINRYLRDYQREGTRFLYGHYIHGGGCILGDDMGLGKTVQVISFLAAVLHKKGTREDI 186

Query: 396 KQD 398
           + +
Sbjct: 187 ENN 189


>gi|21071058 SWI/SNF-related matrix-associated actin-dependent
            regulator of chromatin a5 [Homo sapiens]
          Length = 1052

 Score = 66.2 bits (160), Expect = 2e-10
 Identities = 44/139 (31%), Positives = 69/139 (49%), Gaps = 6/139 (4%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSAFKRDPQIN---- 1582
            +L++ G++ L+FS    VLDI+       N E+ ++       E   +     + N    
Sbjct: 494  KLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPNSTKF 553

Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
            + +L    G  G+ +  A  V+L +   NP  +LQA+ R HRIGQTK   V RF+   T+
Sbjct: 554  VFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTV 613

Query: 1643 EERM--QAMLKTAERSIYI 1659
            EER+  +A +K    SI I
Sbjct: 614  EERIVERAEMKLRLDSIVI 632



 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 65/308 (21%), Positives = 125/308 (40%), Gaps = 48/308 (15%)

Query: 719  LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFL-AEQDIVIITYDVLRS 777
            +++ P S  H W+ E  R V +     L+    ++  F++   L  E D+ + +Y++L  
Sbjct: 233  MVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAAFVRDVLLPGEWDVCVTSYEMLIK 292

Query: 778  ELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMAQR 837
            E                           S      W  + +DEA  ++    K +E+ + 
Sbjct: 293  E--------------------------KSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVRE 326

Query: 838  LSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYC---KKNPQHLYS 894
                NR  ++GTP+Q  L +L+ L+ FL  + +     +        C   +K  + L+ 
Sbjct: 327  FKTTNRLLLTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHM 386

Query: 895  FIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKISD 954
             +   L R  K DV  +  +PP+ E   ++  S ++R +Y R   +  +D+ +       
Sbjct: 387  VLRPFLLRRIKADV--EKSLPPKKEVKIYVGLSKMQREWYTR---ILMKDIDI------- 434

Query: 955  WALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRG--EFLPLQKSFEQSTFSFSTMTMEE 1012
                L+S  +     +L  L++LR+ C HP    G     P        T S   + +++
Sbjct: 435  ----LNSAGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDK 490

Query: 1013 LLTSLQKK 1020
            LL  L+++
Sbjct: 491  LLPKLKEQ 498



 Score = 34.3 bits (77), Expect = 1.0
 Identities = 17/46 (36%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 367 LGGILADEMGLGKTVEVLALI--LTHTRQDVKQDALTLPEGKVVNY 410
           + GILADEMGLGKT++ ++L+  + H R       + +P+  + N+
Sbjct: 199 INGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNW 244


>gi|164419749 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1 isoform b [Homo sapiens]
          Length = 1042

 Score = 64.7 bits (156), Expect = 7e-10
 Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 50/277 (18%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVK--KDGFLQPHFL-AEQDIVIITYDVL 775
           +++ P S  H W++E  R V   SLRV+ + G K  +  F++   +  E D+ + +Y+++
Sbjct: 236 MVLVPKSTLHNWMNEFKRWV--PSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMV 293

Query: 776 RSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMA 835
             E +     H                          W  + +DEA  ++    K +E+ 
Sbjct: 294 IKEKSVFKKFH--------------------------WRYLVIDEAHRIKNEKSKLSEIV 327

Query: 836 QRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYC---KKNPQHL 892
           +     NR  ++GTP+Q  L +L+ L+ FL  + +     +        C   +K  + L
Sbjct: 328 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERL 387

Query: 893 YSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKI 952
           ++ +   L R  K DV  +  +PP+ E   +L  S ++R +Y +   +  +D+ V     
Sbjct: 388 HAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLSKMQREWYTK---ILMKDIDV----- 437

Query: 953 SDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRG 989
                 L+S  +     +L  L++LR+ C HP    G
Sbjct: 438 ------LNSSGKMDKMRLLNILMQLRKCCNHPYLFDG 468



 Score = 64.3 bits (155), Expect = 9e-10
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 8/155 (5%)

Query: 1511 SHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQE 1570
            S+S K+  + + L K  L++ G++ L+FS    +LDI+         E+ ++      +E
Sbjct: 483  SNSGKMVVLDKLLAK--LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540

Query: 1571 NLSAFKRDPQIN----ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIG 1626
               A +     N    I +L    G  G+ +  A  V+L +   NP  +LQA+ R HRIG
Sbjct: 541  REEAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIG 600

Query: 1627 QTKPTIVHRFLIKATIEERM--QAMLKTAERSIYI 1659
            Q KP  V R +   T+EER+  +A +K    SI I
Sbjct: 601  QKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 635



 Score = 35.8 bits (81), Expect = 0.36
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 367 LGGILADEMGLGKTVEVLALI--LTHTRQDVKQDALTLPEGKVVNY 410
           + GILADEMGLGKT++ +AL+  L H R       + +P+  + N+
Sbjct: 202 VNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNW 247


>gi|21071044 SWI/SNF-related matrix-associated actin-dependent
           regulator of chromatin a1 isoform a [Homo sapiens]
          Length = 1054

 Score = 64.7 bits (156), Expect = 7e-10
 Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 50/277 (18%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVK--KDGFLQPHFL-AEQDIVIITYDVL 775
           +++ P S  H W++E  R V   SLRV+ + G K  +  F++   +  E D+ + +Y+++
Sbjct: 236 MVLVPKSTLHNWMNEFKRWV--PSLRVICFVGDKDARAAFIRDEMMPGEWDVCVTSYEMV 293

Query: 776 RSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMA 835
             E +     H                          W  + +DEA  ++    K +E+ 
Sbjct: 294 IKEKSVFKKFH--------------------------WRYLVIDEAHRIKNEKSKLSEIV 327

Query: 836 QRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYC---KKNPQHL 892
           +     NR  ++GTP+Q  L +L+ L+ FL  + +     +        C   +K  + L
Sbjct: 328 REFKSTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTKNCLGDQKLVERL 387

Query: 893 YSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCCQDVVVKLRKI 952
           ++ +   L R  K DV  +  +PP+ E   +L  S ++R +Y +   +  +D+ V     
Sbjct: 388 HAVLKPFLLRRIKTDV--EKSLPPKKEIKIYLGLSKMQREWYTK---ILMKDIDV----- 437

Query: 953 SDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRG 989
                 L+S  +     +L  L++LR+ C HP    G
Sbjct: 438 ------LNSSGKMDKMRLLNILMQLRKCCNHPYLFDG 468



 Score = 58.5 bits (140), Expect = 5e-08
 Identities = 47/167 (28%), Positives = 75/167 (44%), Gaps = 20/167 (11%)

Query: 1511 SHSTKVEAVVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQE 1570
            S+S K+  + + L K  L++ G++ L+FS    +LDI+         E+ ++      +E
Sbjct: 483  SNSGKMVVLDKLLAK--LKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYCRLDGQTPHEE 540

Query: 1571 NLSAFKRDPQIN----------------ILLLPLHTGSNGLTIIEATHVLLVEPILNPAH 1614
                F     +                 I +L    G  G+ +  A  V+L +   NP  
Sbjct: 541  REDKFLEVEFLGQREAIEAFNAPNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQV 600

Query: 1615 ELQAIGRVHRIGQTKPTIVHRFLIKATIEERM--QAMLKTAERSIYI 1659
            +LQA+ R HRIGQ KP  V R +   T+EER+  +A +K    SI I
Sbjct: 601  DLQAMDRAHRIGQKKPVRVFRLITDNTVEERIVERAEIKLRLDSIVI 647



 Score = 35.8 bits (81), Expect = 0.36
 Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)

Query: 367 LGGILADEMGLGKTVEVLALI--LTHTRQDVKQDALTLPEGKVVNY 410
           + GILADEMGLGKT++ +AL+  L H R       + +P+  + N+
Sbjct: 202 VNGILADEMGLGKTLQTIALLGYLKHYRNIPGPHMVLVPKSTLHNW 247


>gi|51599156 chromodomain helicase DNA binding protein 4 [Homo
            sapiens]
          Length = 1912

 Score = 63.9 bits (154), Expect = 1e-09
 Identities = 37/128 (28%), Positives = 64/128 (50%), Gaps = 4/128 (3%)

Query: 1528 LRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENLSAFKR----DPQINI 1583
            L++ G + L+FS    +LD++   L     ++ +I    T      A  R      Q   
Sbjct: 1062 LKEGGHRVLIFSQMTKMLDLLEDFLEHEGYKYERIDGGITGNMRQEAIDRFNAPGAQQFC 1121

Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
             LL    G  G+ +  A  V++ +   NP +++QA  R HRIGQ K  +++RF+ +A++E
Sbjct: 1122 FLLSTRAGGLGINLATADTVIIYDSDWNPHNDIQAFSRAHRIGQNKKVMIYRFVTRASVE 1181

Query: 1644 ERMQAMLK 1651
            ER+  + K
Sbjct: 1182 ERITQVAK 1189



 Score = 41.6 bits (96), Expect = 0.006
 Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 2/127 (1%)

Query: 808 LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
           L +++W  + +DEA  ++    K   +    S  ++  ++GTP+Q  LE+LF L+ FL  
Sbjct: 862 LGSIDWACLIVDEAHRLKNNQSKFFRVLNGYSLQHKLLLTGTPLQNNLEELFHLLNFLTP 921

Query: 868 EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
           E +     ++        +   + L+  +   + R  K DV     +P +TE I  +  S
Sbjct: 922 ERFHNLEGFLEEFADIAKEDQIKKLHDMLGPHMLRRLKADVFK--NMPSKTELIVRVELS 979

Query: 928 PVERHFY 934
           P+++ +Y
Sbjct: 980 PMQKKYY 986


>gi|4557565 excision repair cross-complementing rodent repair
            deficiency, complementation group 6 [Homo sapiens]
          Length = 1493

 Score = 63.5 bits (153), Expect = 2e-09
 Identities = 41/131 (31%), Positives = 66/131 (50%), Gaps = 4/131 (3%)

Query: 1519 VVRTLMKIQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF---QENLSAF 1575
            VV +L+KI  +  G + L+FS  + +LDI+   L      + ++    T    Q  ++ +
Sbjct: 843  VVESLLKIWHKQ-GQRVLLFSQSRQMLDILEVFLRAQKYTYLKMDGTTTIASRQPLITRY 901

Query: 1576 KRDPQINILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHR 1635
              D  I + LL    G  G+ +  A  V++ +P  NP+ + QA  R  RIGQ K   V+R
Sbjct: 902  NEDTSIFVFLLTTRVGGLGVNLTGANRVVIYDPDWNPSTDTQARERAWRIGQKKQVTVYR 961

Query: 1636 FLIKATIEERM 1646
             L   TIEE++
Sbjct: 962  LLTAGTIEEKI 972



 Score = 43.9 bits (102), Expect = 0.001
 Identities = 59/290 (20%), Positives = 111/290 (38%), Gaps = 62/290 (21%)

Query: 718 TLIISPSSICHQWVDEINRHVRSSSLRVLVYQGV---KKDGFLQPHFLAEQDIVIITYDV 774
           T+I+ P+++ HQWV E +       + +L   G    KK+  ++         V   + +
Sbjct: 569 TVIVCPTTVMHQWVKEFHTWWPPFRVAILHETGSYTHKKEKLIRD--------VAHCHGI 620

Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
           L +  +Y+ +   +           RY          +W  + LDE   +  P       
Sbjct: 621 LITSYSYIRLMQDDIS---------RY----------DWHYVILDEGHKIRNPNAAVTLA 661

Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVF-----LGIEPYCVKHWWVRLLYRPYCKKNP 889
            ++    +R  +SG+P+Q  L +L+ L  F     LG  P  ++ + V +    Y   +P
Sbjct: 662 CKQFRTPHRIILSGSPMQNNLRELWSLFDFIFPGKLGTLPVFMEQFSVPITMGGYSNASP 721

Query: 890 QH----------LYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHE 939
                       L   I   L R  K DV   + +P + E++ +   +  +   Y  Q+ 
Sbjct: 722 VQVKTAYKCACVLRDTINPYLLRRMKSDVKMSLSLPDKNEQVLFCRLTDEQHKVY--QNF 779

Query: 940 VCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRG 989
           V  ++V     +I +  +++ S            L+ LR+ C HP    G
Sbjct: 780 VDSKEVY----RILNGEMQIFS-----------GLIALRKICNHPDLFSG 814



 Score = 35.4 bits (80), Expect = 0.46
 Identities = 14/23 (60%), Positives = 19/23 (82%)

Query: 365 QLLGGILADEMGLGKTVEVLALI 387
           Q  GGIL DEMGLGKT++++A +
Sbjct: 524 QQAGGILGDEMGLGKTIQIIAFL 546


>gi|38708321 INO80 complex homolog 1 [Homo sapiens]
          Length = 1556

 Score = 63.2 bits (152), Expect = 2e-09
 Identities = 33/123 (26%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINI 1583
            +L+  G + L++S    ++D++ + +      + ++   S++   ++ ++ F+    I +
Sbjct: 1112 RLKSQGHRVLIYSQMTRMIDLLEEYMVYRKHTYMRLDGSSKISERRDMVADFQNRNDIFV 1171

Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
             LL    G  G+ +  A  V+  +   NP  + QA+ R HR+GQTK   V+R + K TIE
Sbjct: 1172 FLLSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLGQTKQVTVYRLICKGTIE 1231

Query: 1644 ERM 1646
            ER+
Sbjct: 1232 ERI 1234



 Score = 43.5 bits (101), Expect = 0.002
 Identities = 56/287 (19%), Positives = 117/287 (40%), Gaps = 57/287 (19%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKD-----GFLQPHFLAEQD----IVI 769
           LIISP+S  + W  E  R V     +VL Y G   D      F     L  QD    +VI
Sbjct: 571 LIISPASTLNNWHQEFTRFV--PKFKVLPYWGNPHDRKVIRRFWSQKTLYTQDAPFHVVI 628

Query: 770 ITYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTV 829
            +Y ++  ++ Y                             V+W  + LDEAQ ++  + 
Sbjct: 629 TSYQLVVQDVKYFQ--------------------------RVKWQYMVLDEAQALKSSSS 662

Query: 830 KAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYC----VKHWWVRLLYRPYC 885
              ++  +    NR  ++GTP+Q  + +L+ L+ F+    +        W+ + +     
Sbjct: 663 VRWKILLQFQCRNRLLLTGTPIQNTMAELWALLHFIMPTLFDSHEEFNEWFSKDIESHAE 722

Query: 886 KKNP------QHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHR-QH 938
            K+         L+  +   + R  KKDV  + ++  + E + +   +  ++  Y   ++
Sbjct: 723 NKSAIDENQLSRLHMILKPFMLRRIKKDV--ENELSDKIEILMYCQLTSRQKLLYQALKN 780

Query: 939 EVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQ 985
           ++  +D++         ++  +   + T +S++  +++ R+ C HP+
Sbjct: 781 KISIEDLLQS-------SMGSTQQAQNTTSSLMNLVMQFRKVCNHPE 820



 Score = 35.0 bits (79), Expect = 0.61
 Identities = 16/23 (69%), Positives = 20/23 (86%)

Query: 365 QLLGGILADEMGLGKTVEVLALI 387
           Q + GILADEMGLGKTV+ +AL+
Sbjct: 535 QGINGILADEMGLGKTVQSIALL 557


>gi|118421089 chromodomain helicase DNA binding protein 2 isoform 1
            [Homo sapiens]
          Length = 1828

 Score = 62.4 bits (150), Expect = 4e-09
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 4/124 (3%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS---RVKTFQENLSAFKRDPQINI 1583
            +LR+ G + L+FS    +LDI+++ LT  +  F ++    + +  ++ L  F  D   + 
Sbjct: 802  RLRERGNRVLIFSQMVRMLDILAEYLTIKHYPFQRLDGSIKGEIRKQALDHFNADGSEDF 861

Query: 1584 -LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
              LL    G  G+ +  A  V++ +   NP ++LQA  R HRIGQ K   ++R + K T+
Sbjct: 862  CFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGTV 921

Query: 1643 EERM 1646
            EE +
Sbjct: 922  EEEI 925



 Score = 36.6 bits (83), Expect = 0.21
 Identities = 30/129 (23%), Positives = 60/129 (46%), Gaps = 7/129 (5%)

Query: 808 LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
           L ++ W  + +DEA  ++       +        +R  I+GTP+Q  L++L+ L+ F+  
Sbjct: 606 LGSINWAFLGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMP 665

Query: 868 EPYCVKHWWVRLL--YRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLH 925
           E +    +W      +    +   Q L+  +   L R  KKDV  +  +P + E+I  + 
Sbjct: 666 EKF---EFWEDFEEDHGKGRENGYQSLHKVLEPFLLRRVKKDV--EKSLPAKVEQILRVE 720

Query: 926 FSPVERHFY 934
            S +++ +Y
Sbjct: 721 MSALQKQYY 729


>gi|52630326 chromodomain helicase DNA binding protein 3 isoform 1
            [Homo sapiens]
          Length = 2000

 Score = 61.6 bits (148), Expect = 6e-09
 Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF---QENLSAFKRD-PQIN 1582
            +L++ G + L+FS    +LD++   L     ++ +I    T    QE +  F     Q  
Sbjct: 1071 KLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF 1130

Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
              LL    G  G+ +  A  V++ +   NP +++QA  R HRIGQ    +++RF+ +A++
Sbjct: 1131 CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASV 1190

Query: 1643 EERMQAMLK 1651
            EER+  + K
Sbjct: 1191 EERITQVAK 1199



 Score = 40.0 bits (92), Expect = 0.019
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 16/226 (7%)

Query: 808  LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
            L ++ W  + +DEA  ++    K   +       ++  ++GTP+Q  LE+LF L+ FL  
Sbjct: 872  LGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTP 931

Query: 868  EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
            E +     ++        +   + L+  +   + R  K DV     +P +TE I  +  S
Sbjct: 932  ERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK--NMPAKTELIVRVELS 989

Query: 928  PVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
            P+++ +Y            +  R        L+S       S+L  ++ L++ C HP   
Sbjct: 990  PMQKKYYK----------YILTRNFE----ALNSRGGGNQVSLLNIMMDLKKCCNHPYLF 1035

Query: 988  RGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKKCGTECEEAHRQLV 1033
                +   K    +    + +     L  LQK      E+ HR L+
Sbjct: 1036 PVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 1081


>gi|52630322 chromodomain helicase DNA binding protein 3 isoform 2
            [Homo sapiens]
          Length = 1966

 Score = 61.6 bits (148), Expect = 6e-09
 Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF---QENLSAFKRD-PQIN 1582
            +L++ G + L+FS    +LD++   L     ++ +I    T    QE +  F     Q  
Sbjct: 1071 KLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF 1130

Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
              LL    G  G+ +  A  V++ +   NP +++QA  R HRIGQ    +++RF+ +A++
Sbjct: 1131 CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASV 1190

Query: 1643 EERMQAMLK 1651
            EER+  + K
Sbjct: 1191 EERITQVAK 1199



 Score = 40.0 bits (92), Expect = 0.019
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 16/226 (7%)

Query: 808  LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
            L ++ W  + +DEA  ++    K   +       ++  ++GTP+Q  LE+LF L+ FL  
Sbjct: 872  LGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTP 931

Query: 868  EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
            E +     ++        +   + L+  +   + R  K DV     +P +TE I  +  S
Sbjct: 932  ERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK--NMPAKTELIVRVELS 989

Query: 928  PVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
            P+++ +Y            +  R        L+S       S+L  ++ L++ C HP   
Sbjct: 990  PMQKKYYK----------YILTRNFE----ALNSRGGGNQVSLLNIMMDLKKCCNHPYLF 1035

Query: 988  RGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKKCGTECEEAHRQLV 1033
                +   K    +    + +     L  LQK      E+ HR L+
Sbjct: 1036 PVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 1081


>gi|158420731 chromodomain helicase DNA binding protein 3 isoform 3
            [Homo sapiens]
          Length = 2059

 Score = 61.6 bits (148), Expect = 6e-09
 Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 4/129 (3%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTF---QENLSAFKRD-PQIN 1582
            +L++ G + L+FS    +LD++   L     ++ +I    T    QE +  F     Q  
Sbjct: 1130 KLKEQGHRVLIFSQMTKMLDLLEDFLDYEGYKYERIDGGITGALRQEAIDRFNAPGAQQF 1189

Query: 1583 ILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATI 1642
              LL    G  G+ +  A  V++ +   NP +++QA  R HRIGQ    +++RF+ +A++
Sbjct: 1190 CFLLSTRAGGLGINLATADTVIIFDSDWNPHNDIQAFSRAHRIGQANKVMIYRFVTRASV 1249

Query: 1643 EERMQAMLK 1651
            EER+  + K
Sbjct: 1250 EERITQVAK 1258



 Score = 40.0 bits (92), Expect = 0.019
 Identities = 48/226 (21%), Positives = 90/226 (39%), Gaps = 16/226 (7%)

Query: 808  LVAVEWWRICLDEAQMVECPTVKAAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGI 867
            L ++ W  + +DEA  ++    K   +       ++  ++GTP+Q  LE+LF L+ FL  
Sbjct: 931  LGSIRWACLVVDEAHRLKNNQSKFFRVLNGYKIDHKLLLTGTPLQNNLEELFHLLNFLTP 990

Query: 868  EPYCVKHWWVRLLYRPYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFS 927
            E +     ++        +   + L+  +   + R  K DV     +P +TE I  +  S
Sbjct: 991  ERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFK--NMPAKTELIVRVELS 1048

Query: 928  PVERHFYHRQHEVCCQDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAV 987
            P+++ +Y            +  R        L+S       S+L  ++ L++ C HP   
Sbjct: 1049 PMQKKYYK----------YILTRNFE----ALNSRGGGNQVSLLNIMMDLKKCCNHPYLF 1094

Query: 988  RGEFLPLQKSFEQSTFSFSTMTMEELLTSLQKKCGTECEEAHRQLV 1033
                +   K    +    + +     L  LQK      E+ HR L+
Sbjct: 1095 PVAAMESPKLPSGAYEGGALIKSSGKLMLLQKMLRKLKEQGHRVLI 1140


>gi|146219843 Snf2-related CBP activator protein [Homo sapiens]
          Length = 3230

 Score = 61.2 bits (147), Expect = 8e-09
 Identities = 35/123 (28%), Positives = 65/123 (52%), Gaps = 3/123 (2%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQI---SRVKTFQENLSAFKRDPQINI 1583
            QL+  G + L+F+    +LD++ + LT +   + ++   +RV+  Q  +  F  D +I  
Sbjct: 2054 QLKAEGHRVLIFTQMTRMLDVLEQFLTYHGHLYLRLDGSTRVEQRQALMERFNADKRIFC 2113

Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
             +L   +G  G+ +  A  V+  +   NP  + QA  R HRIGQT+   ++R + + T+E
Sbjct: 2114 FILSTRSGGVGVNLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISERTVE 2173

Query: 1644 ERM 1646
            E +
Sbjct: 2174 ENI 2176



 Score = 38.9 bits (89), Expect = 0.042
 Identities = 65/308 (21%), Positives = 118/308 (38%), Gaps = 66/308 (21%)

Query: 719  LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKD------GFLQPHFLAEQDIVIITY 772
            LII P+S+   W  E+ R     S ++L Y G +K+      G+ +P+      + I +Y
Sbjct: 671  LIIVPTSVMLNWEMELKRWC--PSFKILTYYGAQKERKLKRQGWTKPNAF---HVCITSY 725

Query: 773  DVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAA 832
             ++              +D +  R +              W  + LDEAQ ++    +  
Sbjct: 726  KLVL-------------QDHQAFRRKN-------------WRYLILDEAQNIKNFKSQRW 759

Query: 833  EMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYC----VKHWWVRLL------YR 882
            +     +   R  ++GTP+Q  L +L+ L+ FL    +      K W+   L       +
Sbjct: 760  QSLLNFNSQRRLLLTGTPLQNSLMELWSLMHFLMPHVFQSHREFKEWFSNPLTGMIEGSQ 819

Query: 883  PYCKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFYHRQHEVCC 942
             Y +   + L+  +   L R  K DV  + Q+P + E +     S  +R  Y        
Sbjct: 820  EYNEGLVKRLHKVLRPFLLRRVKVDV--EKQMPKKYEHVIRCRLSKRQRCLY-------- 869

Query: 943  QDVVVKLRKISDWALKLSSLDRRTVTSILYPLLRLRQACCHPQAVRGEFLPLQKSFEQST 1002
             D + +            +L      S++  L++LR+ C HP     +  P+   F    
Sbjct: 870  DDFMAQ-------TTTKETLATGHFMSVINILMQLRKVCNHPNLF--DPRPVTSPFITPG 920

Query: 1003 FSFSTMTM 1010
              FST ++
Sbjct: 921  ICFSTASL 928



 Score = 35.4 bits (80), Expect = 0.46
 Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 8/40 (20%)

Query: 356 IREYPNSG--------PQLLGGILADEMGLGKTVEVLALI 387
           +REY + G         + L GILADEMGLGKT++ ++L+
Sbjct: 618 LREYQHIGLDWLVTMYEKKLNGILADEMGLGKTIQTISLL 657


>gi|190358536 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform a [Homo sapiens]
          Length = 1028

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENL---SAFKRDPQINI 1583
            +L+  G + ++FS +  +LDI+   L  +   + ++       E +     F  D  I +
Sbjct: 867  ELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFV 926

Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
             LL    G  G+ +  A  V+L +   NP ++ QA  R HR+GQTK  +V + + + TIE
Sbjct: 927  FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 986

Query: 1644 ERM 1646
            E M
Sbjct: 987  ESM 989



 Score = 43.1 bits (100), Expect = 0.002
 Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 59/269 (21%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDG----FLQPHFLAEQDIVIITYDV 774
           LI+ P+S    W+ E+N  +   +L+VL Y G +++     F       + ++++ TY+ 
Sbjct: 549 LIVVPASTIDNWLREVN--LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNC 606

Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
             S          +S+D    R  K   AI              DE  M++       + 
Sbjct: 607 AIS----------SSDDRSLFRRLKLNYAI-------------FDEGHMLKNMGSIRYQH 643

Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRP----------Y 884
              ++  NR  ++GTPVQ  L +L  L+ F+    +      +R ++            Y
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703

Query: 885 CKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY---------- 934
            K+   H    I   + R  K++V+   Q+PP+ + I     S  +   Y          
Sbjct: 704 EKERIAHAKQIIKPFILRRVKEEVLK--QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKS 761

Query: 935 ------HRQHEVCCQDVVVKLRKISDWAL 957
                  +  E+C  +V+++LRK+++  L
Sbjct: 762 INNLVTEKNTEMC--NVMMQLRKMANHPL 788



 Score = 34.3 bits (77), Expect = 1.0
 Identities = 14/21 (66%), Positives = 18/21 (85%)

Query: 367 LGGILADEMGLGKTVEVLALI 387
           L GILADEMGLGKT++ +A +
Sbjct: 516 LNGILADEMGLGKTIQAIAFL 536


>gi|190358534 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform b [Homo sapiens]
          Length = 1026

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENL---SAFKRDPQINI 1583
            +L+  G + ++FS +  +LDI+   L  +   + ++       E +     F  D  I +
Sbjct: 865  ELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFV 924

Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
             LL    G  G+ +  A  V+L +   NP ++ QA  R HR+GQTK  +V + + + TIE
Sbjct: 925  FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 984

Query: 1644 ERM 1646
            E M
Sbjct: 985  ESM 987



 Score = 43.9 bits (102), Expect = 0.001
 Identities = 57/267 (21%), Positives = 107/267 (40%), Gaps = 57/267 (21%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDG----FLQPHFLAEQDIVIITYDV 774
           LI+ P+S    W+ E+N  +   +L+VL Y G +++     F       + ++++ TY+ 
Sbjct: 549 LIVVPASTIDNWLREVN--LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNC 606

Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
             S          +S+D    R  K   AI              DE  M++       + 
Sbjct: 607 AIS----------SSDDRSLFRRLKLNYAI-------------FDEGHMLKNMGSIRYQH 643

Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRP----------Y 884
              ++  NR  ++GTPVQ  L +L  L+ F+    +      +R ++            Y
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703

Query: 885 CKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY---------- 934
            K+   H    I   + R  K++V+   Q+PP+ + I     S  +   Y          
Sbjct: 704 EKERIAHAKQIIKPFILRRVKEEVLK--QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKS 761

Query: 935 ----HRQHEVCCQDVVVKLRKISDWAL 957
                +  E+C  +V+++LRK+++  L
Sbjct: 762 INNLEKNTEMC--NVMMQLRKMANHPL 786



 Score = 34.3 bits (77), Expect = 1.0
 Identities = 14/21 (66%), Positives = 18/21 (85%)

Query: 367 LGGILADEMGLGKTVEVLALI 387
           L GILADEMGLGKT++ +A +
Sbjct: 516 LNGILADEMGLGKTIQAIAFL 536


>gi|190358532 SWI/SNF-related, matrix-associated actin-dependent
            regulator of chromatin, subfamily a, containing DEAD/H
            box 1 isoform a [Homo sapiens]
          Length = 1028

 Score = 60.8 bits (146), Expect = 1e-08
 Identities = 36/123 (29%), Positives = 61/123 (49%), Gaps = 3/123 (2%)

Query: 1527 QLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKTFQENL---SAFKRDPQINI 1583
            +L+  G + ++FS +  +LDI+   L  +   + ++       E +     F  D  I +
Sbjct: 867  ELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFNTDMDIFV 926

Query: 1584 LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKATIE 1643
             LL    G  G+ +  A  V+L +   NP ++ QA  R HR+GQTK  +V + + + TIE
Sbjct: 927  FLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQGTIE 986

Query: 1644 ERM 1646
            E M
Sbjct: 987  ESM 989



 Score = 43.1 bits (100), Expect = 0.002
 Identities = 57/269 (21%), Positives = 107/269 (39%), Gaps = 59/269 (21%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDG----FLQPHFLAEQDIVIITYDV 774
           LI+ P+S    W+ E+N  +   +L+VL Y G +++     F       + ++++ TY+ 
Sbjct: 549 LIVVPASTIDNWLREVN--LWCPTLKVLCYYGSQEERKQIRFNIHSRYEDYNVIVTTYNC 606

Query: 775 LRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEM 834
             S          +S+D    R  K   AI              DE  M++       + 
Sbjct: 607 AIS----------SSDDRSLFRRLKLNYAI-------------FDEGHMLKNMGSIRYQH 643

Query: 835 AQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRP----------Y 884
              ++  NR  ++GTPVQ  L +L  L+ F+    +      +R ++            Y
Sbjct: 644 LMTINANNRLLLTGTPVQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIY 703

Query: 885 CKKNPQHLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY---------- 934
            K+   H    I   + R  K++V+   Q+PP+ + I     S  +   Y          
Sbjct: 704 EKERIAHAKQIIKPFILRRVKEEVLK--QLPPKKDRIELCAMSEKQEQLYLGLFNRLKKS 761

Query: 935 ------HRQHEVCCQDVVVKLRKISDWAL 957
                  +  E+C  +V+++LRK+++  L
Sbjct: 762 INNLVTEKNTEMC--NVMMQLRKMANHPL 788



 Score = 34.3 bits (77), Expect = 1.0
 Identities = 14/21 (66%), Positives = 18/21 (85%)

Query: 367 LGGILADEMGLGKTVEVLALI 387
           L GILADEMGLGKT++ +A +
Sbjct: 516 LNGILADEMGLGKTIQAIAFL 536


>gi|4885377 histone cluster 1, H1d [Homo sapiens]
          Length = 221

 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 36/100 (36%), Positives = 52/100 (52%), Gaps = 1/100 (1%)

Query: 434 KEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFE 493
           K K   PP   +I  AV     + GVS+ ++ K +++   YDV++N S +K  LK L+ +
Sbjct: 33  KRKASGPPVSELITKAVAASKERSGVSLAALKKALAAA-GYDVEKNNSRIKLGLKSLVSK 91

Query: 494 GLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRK 533
           G + Q KG G SG+F L K     +   K KK     PRK
Sbjct: 92  GTLVQTKGTGASGSFKLNKKAASGEGKPKAKKAGAAKPRK 131


>gi|148612870 chromodomain helicase DNA binding protein 1-like [Homo
            sapiens]
          Length = 897

 Score = 60.5 bits (145), Expect = 1e-08
 Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 4/139 (2%)

Query: 1510 GSHSTKVEAVVRTLMKIQ--LRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQISRVKT 1567
            G H T+    +  L K+   L   G + L+FS    +LDI+   +      + ++     
Sbjct: 339  GDHLTEASGKLHLLDKLLAFLYSGGHRVLLFSQMTQMLDILQDYMDYRGYSYERVDGSVR 398

Query: 1568 FQENLSAFKRDPQ--INILLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRI 1625
             +E   A K   Q  I + LL    G  G+ +  A  V+ V+   NP ++LQA  R HRI
Sbjct: 399  GEERHLAIKNFGQQPIFVFLLSTRAGGVGMNLTAADTVIFVDSDFNPQNDLQAAARAHRI 458

Query: 1626 GQTKPTIVHRFLIKATIEE 1644
            GQ K   V R + + T+EE
Sbjct: 459  GQNKSVKVIRLIGRDTVEE 477



 Score = 40.8 bits (94), Expect = 0.011
 Identities = 42/224 (18%), Positives = 91/224 (40%), Gaps = 40/224 (17%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQGVKKDGFLQPHFLAEQD---IVIITYDVL 775
           LI+ P S+   W +E+ R   +  L  + Y G K++       L ++    +++ TY++ 
Sbjct: 99  LILCPLSVLSNWKEEMQRF--APGLSCVTYAGDKEERACLQQDLKQESRFHVLLTTYEIC 156

Query: 776 RSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVKAAEMA 835
             + ++                          L +  W  + +DEA  ++  +    +  
Sbjct: 157 LKDASF--------------------------LKSFPWSVLVVDEAHRLKNQSSLLHKTL 190

Query: 836 QRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYC-----KKNPQ 890
              S +    ++GTP+Q  L++L+ L+ F  +EP       V    + Y       ++  
Sbjct: 191 SEFSVVFSLLLTGTPIQNSLQELYSLLSF--VEPDLFSKEEVGDFIQRYQDIEKESESAS 248

Query: 891 HLYSFIAKILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY 934
            L+  +   L R  K +V    ++P +TE + +   S +++ +Y
Sbjct: 249 ELHKLLQPFLLRRVKAEV--ATELPKKTEVVIYHGMSALQKKYY 290



 Score = 31.6 bits (70), Expect = 6.7
 Identities = 19/45 (42%), Positives = 23/45 (51%), Gaps = 8/45 (17%)

Query: 352 TGCIIREYPNSGPQLL--------GGILADEMGLGKTVEVLALIL 388
           TG  +R Y   G   L        G IL DEMGLGKT + +AL +
Sbjct: 42  TGIHLRSYQLEGVNWLAQRFHCQNGCILGDEMGLGKTCQTIALFI 86


>gi|4885381 histone cluster 1, H1b [Homo sapiens]
          Length = 226

 Score = 58.9 bits (141), Expect = 4e-08
 Identities = 44/156 (28%), Positives = 70/156 (44%), Gaps = 11/156 (7%)

Query: 434 KEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFE 493
           K K   PP   +I  AV     + G+S+ ++ K +++   YDV++N S +K  LK L+ +
Sbjct: 35  KRKATGPPVSELITKAVAASKERNGLSLAALKKALAA-GGYDVEKNNSRIKLGLKSLVSK 93

Query: 494 GLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRKIQKETRKSGNKDTDSEYLPS 553
           G + Q KG G SG+F L K     +   K KK      +K    T K   K   ++    
Sbjct: 94  GTLVQTKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKKPAGATPKKAKKAAGAKKAVK 153

Query: 554 DTSDDDDDPYYYYYKSRRNRSKLRKKLVPSTKKGKS 589
            T            K+++  +   KK+  S KK K+
Sbjct: 154 KTPK----------KAKKPAAAGVKKVAKSPKKAKA 179


>gi|68299795 chromodomain helicase DNA binding protein 1 [Homo
            sapiens]
          Length = 1710

 Score = 58.2 bits (139), Expect = 7e-08
 Identities = 36/123 (29%), Positives = 64/123 (52%), Gaps = 4/123 (3%)

Query: 1526 IQLRDPGAKALVFSTWQDVLDIISKALTDNNMEFAQIS---RVKTFQENLSAFKRDPQIN 1582
            I+LR+ G + L+FS    +LDI+++ L      F ++    + +  ++ L  F  +   +
Sbjct: 798  IRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRKQALDHFNAEGSED 857

Query: 1583 I-LLLPLHTGSNGLTIIEATHVLLVEPILNPAHELQAIGRVHRIGQTKPTIVHRFLIKAT 1641
               LL    G  G+ +  A  V++ +   NP ++LQA  R HRIGQ K   ++R + K +
Sbjct: 858  FCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQKKQVNIYRLVTKGS 917

Query: 1642 IEE 1644
            +EE
Sbjct: 918  VEE 920



 Score = 34.3 bits (77), Expect = 1.0
 Identities = 48/228 (21%), Positives = 89/228 (39%), Gaps = 47/228 (20%)

Query: 719 LIISPSSICHQWVDEINRHVRSSSLRVLVYQG-VKKDGFLQPHFLAEQ-------DIVII 770
           L++ P S    W  EI     +S +  +VY G +     ++ H            +I++ 
Sbjct: 534 LLVVPLSTLTSWQREIQTW--ASQMNAVVYLGDINSRNMIRTHEWTHHQTKRLKFNILLT 591

Query: 771 TYDVLRSELNYVDIPHSNSEDGRRLRNQKRYMAIPSPLVAVEWWRICLDEAQMVECPTVK 830
           TY++L  +  +                          L  + W  I +DEA  ++     
Sbjct: 592 TYEILLKDKAF--------------------------LGGLNWAFIGVDEAHRLKNDDSL 625

Query: 831 AAEMAQRLSGINRWCISGTPVQRGLEDLFGLVVFLGIEPYCVKHWWVRLLYRPYCKKNPQ 890
             +        +R  I+GTP+Q  L++L+ L+ F  I P     W     +     K  +
Sbjct: 626 LYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHF--IMPEKFSSWED---FEEEHGKGRE 680

Query: 891 HLYSFIAK----ILWRSAKKDVIDQIQIPPQTEEIHWLHFSPVERHFY 934
           + Y+ + K     L R  KKDV  +  +P + E+I  +  S +++ +Y
Sbjct: 681 YGYASLHKELEPFLLRRVKKDV--EKSLPAKVEQILRMEMSALQKQYY 726



 Score = 31.2 bits (69), Expect = 8.7
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 10/57 (17%)

Query: 347 YYNPYTGCIIREYPNSGPQLLGG--------ILADEMGLGKTVEVLALI--LTHTRQ 393
           Y   + G  +R+Y  +G   L          ILADEMGLGKT++ ++ +  L H  Q
Sbjct: 472 YIGGHEGLELRDYQLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQ 528


>gi|4885379 histone cluster 1, H1e [Homo sapiens]
          Length = 219

 Score = 57.4 bits (137), Expect = 1e-07
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 1/100 (1%)

Query: 434 KEKVQCPPTRVMILTAVKEMNGKKGVSILSIYKYVSSIYRYDVQRNRSLLKRMLKCLIFE 493
           K K   PP   +I  AV     + GVS+ ++ K +++   YDV++N S +K  LK L+ +
Sbjct: 32  KRKASGPPVSELITKAVAASKERSGVSLAALKKALAAA-GYDVEKNNSRIKLGLKSLVSK 90

Query: 494 GLVKQIKGHGFSGTFTLGKNYKEEDICDKTKKQAVGSPRK 533
           G + Q KG G SG+F L K     +   K KK      +K
Sbjct: 91  GTLVQTKGTGASGSFKLNKKAASGEAKPKAKKAGAAKAKK 130


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,413,027
Number of Sequences: 37866
Number of extensions: 2967471
Number of successful extensions: 10531
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 146
Number of HSP's that attempted gapping in prelim test: 10086
Number of HSP's gapped (non-prelim): 528
length of query: 1659
length of database: 18,247,518
effective HSP length: 116
effective length of query: 1543
effective length of database: 13,855,062
effective search space: 21378360666
effective search space used: 21378360666
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 69 (31.2 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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