Guide to the Human Genome
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Name: SMARCA1 Sequence: fasta or formatted (1054aa) NCBI GI: 21071044
Description:

SWI/SNF-related matrix-associated actin-dependent regulator of chromatin a1 isoform a

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [1042aa] SWI/SNF-related matrix-associated actin-dependent regulator of ch...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         71           5
 C cysteine            1.1         12           2
 D aspartate           5.4         57           2
 E glutamate          10.5        111           3
 F phenylalanine       4.4         46           2
 G glycine             4.4         46           2
 H histidine           1.6         17           1
 I isoleucine          6.0         63           1
 K lysine              9.1         96           3
 L leucine             9.1         96           3
 M methionine          3.1         33           2
 N asparagine          4.0         42           2
 P proline             4.6         48           2
 Q glutamine           4.3         45           2
 R arginine            7.3         77           2
 S serine              5.1         54           2
 T threonine           4.4         46           2
 V valine              4.7         50           2
 W tryptophan          1.3         14           1
 Y tyrosine            2.8         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWI/SNF-related matrix-associated actin-dependent re... 
SMARCA1               0.984   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA5               0.813   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.210   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.210   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.210   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.210   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.209   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.209   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.209   SWI/SNF-related matrix-associated actin-dependent re...
CHD2                  0.205   chromodomain helicase DNA binding protein 2 isoform...
SMARCA2               0.199   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.199   SWI/SNF-related matrix-associated actin-dependent re...
CHD1                  0.198   chromodomain helicase DNA binding protein 1 
CHD3                  0.197   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.197   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.197   chromodomain helicase DNA binding protein 3 isoform...
CHD1L                 0.195   chromodomain helicase DNA binding protein 1-like [H...
CHD5                  0.192   chromodomain helicase DNA binding protein 5 
CHD4                  0.189   chromodomain helicase DNA binding protein 4 
CHD6                  0.179   chromodomain helicase DNA binding protein 6 
CHD8                  0.179   chromodomain helicase DNA binding protein 8 
CHD7                  0.177   chromodomain helicase DNA binding protein 7 
CHD9                  0.177   chromodomain helicase DNA binding protein 9 
SMARCAD1              0.138   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.138   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.138   SWI/SNF-related, matrix-associated actin-dependent ...
SRCAP                 0.120   Snf2-related CBP activator protein 
ERCC6                 0.119   excision repair cross-complementing rodent repair def...
INO80                 0.115   INO80 complex homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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