Guide to the Human Genome
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Name: SMARCAD1 Sequence: fasta or formatted (1028aa) NCBI GI: 190358532
Description:

SWI/SNF-related, matrix-associated actin-dependent regulator of chromatin, subfamily a, containing DEAD/H box 1 isoform a

Referenced in:

Nonhistone Chromosomal Proteins

Other entries for this name:
alt prot [1026aa] SWI/SNF-related, matrix-associated actin-dependent regulator of c...
alt mRNA [1028aa] SWI/SNF-related, matrix-associated actin-dependent regulator of c...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         42           3
 C cysteine            1.4         14           1
 D aspartate           6.2         64           2
 E glutamate           9.2         95           3
 F phenylalanine       3.4         35           1
 G glycine             4.6         47           3
 H histidine           2.2         23           2
 I isoleucine          5.8         60           2
 K lysine              8.1         83           2
 L leucine            11.0        113           3
 M methionine          3.5         36           2
 N asparagine          6.0         62           2
 P proline             3.5         36           2
 Q glutamine           5.2         53           2
 R arginine            4.4         45           2
 S serine              8.6         88           4
 T threonine           4.9         50           2
 V valine              4.7         48           2
 W tryptophan          0.8          8           1
 Y tyrosine            2.5         26           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   SWI/SNF-related, matrix-associated actin-dependent ... 
SMARCAD1              1.000   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.996   SWI/SNF-related, matrix-associated actin-dependent ...
HELLS                 0.155   helicase, lymphoid-specific 
SMARCA1               0.147   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA5               0.146   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA1               0.143   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.139   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.139   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.139   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.139   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.139   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.139   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.139   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.137   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.137   SWI/SNF-related matrix-associated actin-dependent re...
CHD1                  0.135   chromodomain helicase DNA binding protein 1 
CHD2                  0.135   chromodomain helicase DNA binding protein 2 isoform...
CHD7                  0.125   chromodomain helicase DNA binding protein 7 
CHD4                  0.123   chromodomain helicase DNA binding protein 4 
CHD8                  0.123   chromodomain helicase DNA binding protein 8 
CHD6                  0.123   chromodomain helicase DNA binding protein 6 
CHD3                  0.122   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.122   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.122   chromodomain helicase DNA binding protein 3 isoform...
CHD9                  0.120   chromodomain helicase DNA binding protein 9 
CHD1L                 0.117   chromodomain helicase DNA binding protein 1-like [H...
CHD5                  0.111   chromodomain helicase DNA binding protein 5 
BTAF1                 0.111   BTAF1 RNA polymerase II, B-TFIID transcription facto...
ERCC6                 0.107   excision repair cross-complementing rodent repair def...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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