Guide to the Human Genome
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Name: HLTF Sequence: fasta or formatted (1009aa) NCBI GI: 21071054
Description:

helicase-like transcription factor

Referenced in:

Nonhistone Chromosomal Proteins
Ring Finger Proteins

Other entries for this name:
alt mRNA [1009aa] helicase-like transcription factor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.7         58           2
 C cysteine            1.8         18           2
 D aspartate           5.5         55           2
 E glutamate           7.0         71           2
 F phenylalanine       3.6         36           2
 G glycine             5.7         58           2
 H histidine           2.5         25           1
 I isoleucine          5.6         56           2
 K lysine              8.7         88           3
 L leucine            10.1        102           3
 M methionine          2.4         24           1
 N asparagine          5.3         53           3
 P proline             5.1         51           2
 Q glutamine           3.9         39           2
 R arginine            5.3         53           2
 S serine              7.1         72           3
 T threonine           5.6         57           2
 V valine              5.7         58           2
 W tryptophan          1.4         14           2
 Y tyrosine            2.1         21           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   helicase-like transcription factor 
HLTF                  1.000   helicase-like transcription factor 
TTF2                  0.115   transcription termination factor, RNA polymerase II ...
HELLS                 0.062   helicase, lymphoid-specific 
SMARCAD1              0.060   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.060   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.059   SWI/SNF-related, matrix-associated actin-dependent ...
SHPRH                 0.043   SNF2 histone linker PHD RING helicase isoform a [Ho...
SHPRH                 0.043   SNF2 histone linker PHD RING helicase isoform b [Hom...
CHD2                  0.037   chromodomain helicase DNA binding protein 2 isoform...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.036   SWI/SNF-related matrix-associated actin-dependent re...
ERCC6L                0.036   excision repair protein ERCC6-like 
CHD4                  0.036   chromodomain helicase DNA binding protein 4 
SMARCA1               0.036   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.036   SWI/SNF-related matrix-associated actin-dependent re...
CHD5                  0.036   chromodomain helicase DNA binding protein 5 
CHD3                  0.035   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.035   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.035   chromodomain helicase DNA binding protein 3 isoform...
INO80                 0.035   INO80 complex homolog 1 
SRCAP                 0.035   Snf2-related CBP activator protein 
SMARCA2               0.035   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.035   SWI/SNF-related matrix-associated actin-dependent re...
RAD54B                0.034   RAD54 homolog B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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