Guide to the Human Genome
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Name: HELLS Sequence: fasta or formatted (838aa) NCBI GI: 21914927
Description:

helicase, lymphoid-specific

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             4.1         34           3
 C cysteine            1.3         11           2
 D aspartate           5.4         45           2
 E glutamate           9.7         81           4
 F phenylalanine       3.7         31           3
 G glycine             4.3         36           2
 H histidine           1.8         15           1
 I isoleucine          6.6         55           2
 K lysine              8.8         74           3
 L leucine            10.9         91           3
 M methionine          3.6         30           2
 N asparagine          5.1         43           2
 P proline             4.4         37           2
 Q glutamine           4.2         35           3
 R arginine            6.6         55           2
 S serine              6.8         57           3
 T threonine           4.3         36           1
 V valine              5.4         45           3
 W tryptophan          1.1          9           1
 Y tyrosine            2.1         18           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   helicase, lymphoid-specific 
SMARCA4               0.217   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.217   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.217   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.217   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.217   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.217   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.217   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.216   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.216   SWI/SNF-related matrix-associated actin-dependent re...
CHD7                  0.210   chromodomain helicase DNA binding protein 7 
CHD6                  0.208   chromodomain helicase DNA binding protein 6 
CHD9                  0.202   chromodomain helicase DNA binding protein 9 
CHD1L                 0.198   chromodomain helicase DNA binding protein 1-like [H...
CHD8                  0.197   chromodomain helicase DNA binding protein 8 
SMARCAD1              0.190   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.190   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.190   SWI/SNF-related, matrix-associated actin-dependent ...
CHD2                  0.172   chromodomain helicase DNA binding protein 2 isoform...
CHD3                  0.161   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.161   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.161   chromodomain helicase DNA binding protein 3 isoform...
CHD5                  0.161   chromodomain helicase DNA binding protein 5 
CHD4                  0.149   chromodomain helicase DNA binding protein 4 
SMARCA5               0.141   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA1               0.140   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.140   SWI/SNF-related matrix-associated actin-dependent re...
BTAF1                 0.135   BTAF1 RNA polymerase II, B-TFIID transcription facto...
ERCC6L                0.124   excision repair protein ERCC6-like 
INO80                 0.124   INO80 complex homolog 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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