Guide to the Human Genome
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Name: ERCC6 Sequence: fasta or formatted (1493aa) NCBI GI: 4557565
Description:

excision repair cross-complementing rodent repair deficiency, complementation group 6

Referenced in:

DNases, Recombination, and DNA Repair
DNA Transposon and Retrovirus-related Sequences

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.2         93           2
 C cysteine            1.3         20           1
 D aspartate           5.7         85           3
 E glutamate           8.4        126           7
 F phenylalanine       3.5         52           2
 G glycine             6.9        103           5
 H histidine           2.7         40           2
 I isoleucine          4.3         64           2
 K lysine              8.4        126           2
 L leucine             8.6        128           2
 M methionine          1.8         27           1
 N asparagine          3.5         53           2
 P proline             4.8         71           2
 Q glutamine           5.7         85           2
 R arginine            6.2         92           2
 S serine              8.2        122           3
 T threonine           4.8         72           3
 V valine              5.4         80           2
 W tryptophan          1.1         17           2
 Y tyrosine            2.5         37           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   excision repair cross-complementing rodent repair def... 
ERCC6L                0.105   excision repair protein ERCC6-like 
BTAF1                 0.091   BTAF1 RNA polymerase II, B-TFIID transcription facto...
SMARCA5               0.089   SWI/SNF-related matrix-associated actin-dependent re...
C9orf102              0.088   RAD26L hypothetical protein 
SMARCA1               0.086   SWI/SNF-related matrix-associated actin-dependent r...
RAD54L                0.084   RAD54-like protein 
RAD54L                0.084   RAD54-like protein 
RAD54B                0.084   RAD54 homolog B 
SMARCA1               0.083   SWI/SNF-related matrix-associated actin-dependent re...
CHD2                  0.080   chromodomain helicase DNA binding protein 2 isoform...
SMARCA2               0.080   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.080   SWI/SNF-related matrix-associated actin-dependent re...
CHD3                  0.079   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.079   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.079   chromodomain helicase DNA binding protein 3 isoform...
CHD5                  0.079   chromodomain helicase DNA binding protein 5 
SMARCA4               0.079   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.078   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.078   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.078   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.078   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.078   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.078   SWI/SNF-related matrix-associated actin-dependent r...
CHD1                  0.078   chromodomain helicase DNA binding protein 1 
CHD7                  0.077   chromodomain helicase DNA binding protein 7 
CHD4                  0.077   chromodomain helicase DNA binding protein 4 
CHD6                  0.075   chromodomain helicase DNA binding protein 6 
CHD9                  0.074   chromodomain helicase DNA binding protein 9 
SMARCAD1              0.074   SWI/SNF-related, matrix-associated actin-dependent ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
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