Guide to the Human Genome
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Name: INO80 Sequence: fasta or formatted (1556aa) NCBI GI: 38708321
Description:

INO80 complex homolog 1

Referenced in:

Nonhistone Chromosomal Proteins

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.2        112           4
 C cysteine            1.0         16           1
 D aspartate           4.9         77           3
 E glutamate           6.7        105           3
 F phenylalanine       3.5         55           2
 G glycine             5.5         85           3
 H histidine           2.6         41           3
 I isoleucine          4.4         68           2
 K lysine              8.1        126           4
 L leucine            11.1        172           3
 M methionine          2.1         33           1
 N asparagine          4.4         68           2
 P proline             4.2         66           3
 Q glutamine           5.1         79           2
 R arginine            7.3        113           3
 S serine             10.0        156           4
 T threonine           3.7         57           2
 V valine              4.0         62           3
 W tryptophan          1.3         20           1
 Y tyrosine            2.9         45           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   INO80 complex homolog 1 
SRCAP                 0.093   Snf2-related CBP activator protein 
SMARCA1               0.078   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA1               0.078   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA4               0.076   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.076   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.076   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.076   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.076   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.076   SWI/SNF-related matrix-associated actin-dependent r...
SMARCA4               0.076   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.076   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA2               0.076   SWI/SNF-related matrix-associated actin-dependent re...
SMARCA5               0.073   SWI/SNF-related matrix-associated actin-dependent re...
HELLS                 0.066   helicase, lymphoid-specific 
CHD2                  0.066   chromodomain helicase DNA binding protein 2 isoform...
SMARCAD1              0.065   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.065   SWI/SNF-related, matrix-associated actin-dependent ...
SMARCAD1              0.065   SWI/SNF-related, matrix-associated actin-dependent ...
EP400                 0.064   E1A binding protein p400 
CHD1                  0.063   chromodomain helicase DNA binding protein 1 
CHD1L                 0.061   chromodomain helicase DNA binding protein 1-like [H...
CHD3                  0.058   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.058   chromodomain helicase DNA binding protein 3 isoform ...
CHD3                  0.058   chromodomain helicase DNA binding protein 3 isoform...
CHD5                  0.057   chromodomain helicase DNA binding protein 5 
CHD7                  0.056   chromodomain helicase DNA binding protein 7 
CHD9                  0.056   chromodomain helicase DNA binding protein 9 
CHD4                  0.055   chromodomain helicase DNA binding protein 4 
CHD8                  0.055   chromodomain helicase DNA binding protein 8 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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