Guide to the Human Genome
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Name: AGER Sequence: fasta or formatted (342aa) NCBI GI: 26787962
Description:

advanced glycosylation end product-specific receptor isoform 2 precursor

Referenced in:

Additional Immunoglobulin-related Receptors

Other entries for this name:
alt prot [404aa] advanced glycosylation end product-specific receptor isoform 1 pr...
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         28           2
 C cysteine            2.3          8           1
 D aspartate           2.6          9           1
 E glutamate           6.1         21           2
 F phenylalanine       1.5          5           1
 G glycine            13.7         47           3
 H histidine           1.8          6           1
 I isoleucine          2.6          9           1
 K lysine              4.4         15           2
 L leucine             7.3         25           1
 M methionine          1.2          4           1
 N asparagine          2.6          9           1
 P proline            10.5         36           2
 Q glutamine           3.2         11           1
 R arginine            8.5         29           2
 S serine              5.8         20           2
 T threonine           5.6         19           1
 V valine              8.8         30           2
 W tryptophan          2.3          8           1
 Y tyrosine            0.9          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   advanced glycosylation end product-specific receptor... 
AGER                  0.733   advanced glycosylation end product-specific receptor...
ALCAM                 0.078   activated leukocyte cell adhesion molecule 
MCAM                  0.064   melanoma cell adhesion molecule 
HMCN2                 0.061   PREDICTED: hemicentin 2 
HMCN2                 0.061   PREDICTED: hemicentin 2 
HMCN2                 0.061   PREDICTED: hemicentin 2 
ROBO1                 0.057   roundabout 1 isoform d 
ROBO1                 0.057   roundabout 1 isoform c 
ROBO1                 0.057   roundabout 1 isoform b 
LOC642132             0.057   PREDICTED: similar to roundabout 1 isoform 1 
LOC642132             0.057   PREDICTED: similar to roundabout 1 isoform 2 
ROBO1                 0.057   roundabout 1 isoform a 
ROBO3                 0.054   roundabout, axon guidance receptor, homolog 3 
MDGA1                 0.048   MAM domain containing glycosylphosphatidylinositol a...
HMCN1                 0.045   hemicentin 1 
ROBO2                 0.045   roundabout, axon guidance receptor, homolog 2 isofo...
ROBO2                 0.045   roundabout, axon guidance receptor, homolog 2 isofor...
PXDN                  0.042   peroxidasin 
LOC100292387          0.042   PREDICTED: similar to hemicentin 2 
ROBO4                 0.039   roundabout homolog 4, magic roundabout 
NTM                   0.038   neurotrimin isoform 4 
NTM                   0.038   neurotrimin isoform 3 
NTM                   0.038   neurotrimin isoform 2 
NTM                   0.038   neurotrimin isoform 1 
HSPG2                 0.036   heparan sulfate proteoglycan 2 
BCAM                  0.036   basal cell adhesion molecule isoform 2 precursor [Ho...
BCAM                  0.036   basal cell adhesion molecule isoform 1 precursor [Ho...
IGSF10                0.036   immunoglobulin superfamily, member 10 
LOC100289200          0.035   PREDICTED: hypothetical protein XP_002342997 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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