Guide to the Human Genome
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Name: IQCF6 Sequence: fasta or formatted (107aa) NCBI GI: 254028213
Description:

IQ motif containing F6

Referenced in:

Additional Interaction Domain Families

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            12.1         13           2
 C cysteine            2.8          3           1
 D aspartate           0.9          1           1
 E glutamate           4.7          5           1
 F phenylalanine       0.9          1           1
 G glycine             1.9          2           1
 H histidine           2.8          3           1
 I isoleucine          5.6          6           2
 K lysine              1.9          2           1
 L leucine            11.2         12           2
 M methionine          4.7          5           1
 N asparagine          0.0          0           0
 P proline             0.0          0           0
 Q glutamine          11.2         12           1
 R arginine           16.8         18           3
 S serine              3.7          4           1
 T threonine           3.7          4           1
 V valine              6.5          7           2
 W tryptophan          6.5          7           2
 Y tyrosine            1.9          2           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   IQ motif containing F6 
IQCF5                 0.510   IQ motif containing F5 
IQCF2                 0.459   IQ motif containing F2 
IQCF1                 0.454   IQ motif containing F1 
IQCF3                 0.378   IQ motif containing F3 
ASPM                  0.071   asp (abnormal spindle)-like, microcephaly associate...
CAMTA2                0.061   calmodulin binding transcription activator 2 
MYO5B                 0.051   myosin VB 
MYO5C                 0.051   myosin VC 
MYO15A                0.051   myosin XV 
MYO7A                 0.051   myosin VIIA isoform 2 
MYO7A                 0.051   myosin VIIA isoform 3 
MYO7A                 0.051   myosin VIIA isoform 1 
MYO5A                 0.046   myosin VA isoform 2 
MYO5A                 0.046   myosin VA isoform 1 
IQGAP3                0.046   IQ motif containing GTPase activating protein 3 [Hom...
MYO1C                 0.041   myosin IC isoform b 
MYO1C                 0.041   myosin IC isoform a 
MYO1C                 0.041   myosin IC isoform c 
MYO1H                 0.036   myosin 1H 
IQGAP1                0.036   IQ motif containing GTPase activating protein 1 [Homo...
CAMTA1                0.036   calmodulin-binding transcription activator 1 
MYO7B                 0.036   myosin VIIB 
KIAA1683              0.031   KIAA1683 isoform a 
KIAA1683              0.031   KIAA1683 isoform c 
KIAA1683              0.031   KIAA1683 isoform b 
MYO9A                 0.026   myosin IXA 
MYO9B                 0.026   myosin IXB isoform 2 
MYO9B                 0.026   myosin IXB isoform 1 
MYO19                 0.026   myosin head domain containing 1 isoform 1 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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