Guide to the Human Genome
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Name: MYO1C Sequence: fasta or formatted (1063aa) NCBI GI: 124494238
Description:

myosin IC isoform a

Referenced in:

Myosin

Other entries for this name:
alt prot [1028aa] myosin IC isoform c
alt prot [1044aa] myosin IC isoform b
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.0         74           2
 C cysteine            1.4         15           1
 D aspartate           4.1         44           1
 E glutamate           7.2         77           3
 F phenylalanine       4.4         47           2
 G glycine             5.5         58           2
 H histidine           2.4         25           2
 I isoleucine          4.8         51           2
 K lysine              6.2         66           2
 L leucine            11.2        119           3
 M methionine          0.9         10           1
 N asparagine          4.0         43           2
 P proline             4.2         45           3
 Q glutamine           4.7         50           2
 R arginine            8.5         90           3
 S serine              6.3         67           2
 T threonine           5.3         56           2
 V valine              7.2         77           2
 W tryptophan          1.3         14           2
 Y tyrosine            3.3         35           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   myosin IC isoform a 
MYO1C                 0.976   myosin IC isoform b 
MYO1C                 0.967   myosin IC isoform c 
MYO1H                 0.601   myosin 1H 
MYO1B                 0.371   myosin IB isoform 2 
MYO1A                 0.364   myosin IA 
MYO1B                 0.342   myosin IB isoform 1 
MYO1B                 0.342   myosin IB isoform 1 
MYO1D                 0.320   myosin ID 
MYO1G                 0.302   myosin IG 
MYO1F                 0.280   myosin IF 
MYO1E                 0.278   myosin IE 
MYO7B                 0.233   myosin VIIB 
MYO7A                 0.229   myosin VIIA isoform 2 
MYO7A                 0.229   myosin VIIA isoform 3 
MYO7A                 0.229   myosin VIIA isoform 1 
MYO10                 0.218   myosin X 
MYO5C                 0.217   myosin VC 
MYO15A                0.211   myosin XV 
MYO5A                 0.204   myosin VA isoform 2 
MYO5A                 0.204   myosin VA isoform 1 
MYO5B                 0.203   myosin VB 
MYH7                  0.200   myosin, heavy chain 7, cardiac muscle, beta 
MYH6                  0.200   myosin heavy chain 6 
MYH10                 0.196   myosin, heavy polypeptide 10, non-muscle 
MYH14                 0.195   myosin, heavy chain 14 isoform 2 
MYH3                  0.194   myosin, heavy chain 3, skeletal muscle, embryonic [H...
MYH14                 0.194   myosin, heavy chain 14 isoform 1 
MYH11                 0.193   smooth muscle myosin heavy chain 11 isoform SM1A [Ho...
MYH11                 0.193   smooth muscle myosin heavy chain 11 isoform SM2A [Ho...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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