Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: EYA1 Sequence: fasta or formatted (559aa) NCBI GI: 26667222
Description:

eyes absent 1 isoform a

Referenced in:

Additional Genes in Development

Other entries for this name:
alt prot [592aa] eyes absent 1 isoform b
alt prot [592aa] eyes absent 1 isoform b
alt prot [557aa] eyes absent 1 isoform c
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         38           3
 C cysteine            0.7          4           1
 D aspartate           4.5         25           2
 E glutamate           4.1         23           3
 F phenylalanine       3.9         22           2
 G glycine             8.1         45           2
 H histidine           2.1         12           2
 I isoleucine          4.8         27           2
 K lysine              2.7         15           2
 L leucine             7.9         44           2
 M methionine          2.0         11           1
 N asparagine          4.5         25           3
 P proline             7.2         40           3
 Q glutamine           5.5         31           2
 R arginine            4.5         25           2
 S serine             12.2         68           3
 T threonine           8.4         47           3
 V valine              3.8         21           2
 W tryptophan          1.1          6           1
 Y tyrosine            5.4         30           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   eyes absent 1 isoform a 
EYA1                  0.987   eyes absent 1 isoform b 
EYA1                  0.987   eyes absent 1 isoform b 
EYA1                  0.903   eyes absent 1 isoform c 
EYA4                  0.712   eyes absent 4 isoform b 
EYA4                  0.712   eyes absent 4 isoform a 
EYA4                  0.698   eyes absent 4 isoform d 
EYA2                  0.593   eyes absent 2 isoform a 
EYA2                  0.593   eyes absent 2 isoform b 
EYA2                  0.593   eyes absent 2 isoform a 
EYA2                  0.593   eyes absent 2 isoform a 
EYA2                  0.557   eyes absent 2 isoform c 
EYA3                  0.470   eyes absent 3 
EWSR1                 0.031   Ewing sarcoma breakpoint region 1 isoform 4 
EWSR1                 0.027   Ewing sarcoma breakpoint region 1 isoform 5 
EWSR1                 0.027   Ewing sarcoma breakpoint region 1 isoform 3 
EWSR1                 0.027   Ewing sarcoma breakpoint region 1 isoform 2 
EWSR1                 0.025   Ewing sarcoma breakpoint region 1 isoform 1 
RBM14                 0.024   RNA binding motif protein 14 
FUS                   0.022   fusion (involved in t(12;16) in malignant liposarcoma...
RBBP6                 0.022   retinoblastoma-binding protein 6 isoform 2 
MUC4                  0.020   mucin 4 isoform a 
POLR2A                0.018   DNA-directed RNA polymerase II A 
MUC21                 0.017   mucin 21 
MUC6                  0.017   mucin 6, gastric 
ANKRD17               0.017   ankyrin repeat domain protein 17 isoform a 
ANKRD17               0.017   ankyrin repeat domain protein 17 isoform b 
ZMIZ2                 0.017   zinc finger, MIZ-type containing 2 isoform 1 
NUP214                0.016   nucleoporin 214kDa 
NR4A1                 0.016   nuclear receptor subfamily 4, group A, member 1 [Hom...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press