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Search of human proteins with 121949746
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|121949746 family with sequence similarity 132, member A
[Homo sapiens]
(302 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|121949746 family with sequence similarity 132, member A [Homo... 602 e-172
gi|169164936 PREDICTED: family with sequence similarity 132, mem... 172 3e-43
gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo sap... 172 3e-43
gi|221139764 PHD and ring finger domains 1 [Homo sapiens] 37 0.021
gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens] 36 0.048
gi|62739183 C1q and tumor necrosis factor related protein 3 isof... 35 0.081
gi|156071470 hyperpolarization activated cyclic nucleotide-gated... 33 0.40
gi|4505419 nucleolar protein 3 [Homo sapiens] 32 0.90
gi|49472835 bridging integrator 2 [Homo sapiens] 32 0.90
gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens] 31 1.2
gi|239757813 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|89060771 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|51477177 PREDICTED: hypothetical protein [Homo sapiens] 31 1.2
gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens] 31 1.2
gi|22218341 matrix metalloproteinase 21 preproprotein [Homo sapi... 31 1.2
gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens] 31 1.2
gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens] 31 1.2
gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens] 31 1.2
gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Ho... 31 1.5
gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Ho... 31 1.5
gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Ho... 31 1.5
gi|134142824 forkhead box D2 [Homo sapiens] 31 1.5
gi|50511941 EMI domain containing 1 [Homo sapiens] 31 1.5
gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein ... 30 2.0
gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein ... 30 2.0
gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein ... 30 2.0
gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isofo... 30 2.6
gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isofor... 30 2.6
gi|239755068 PREDICTED: hypothetical protein [Homo sapiens] 30 2.6
gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sap... 30 2.6
>gi|121949746 family with sequence similarity 132, member A [Homo
sapiens]
Length = 302
Score = 602 bits (1553), Expect = e-172
Identities = 302/302 (100%), Positives = 302/302 (100%)
Query: 1 MRRWAWAAVVVLLGPQLVLLGGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKP 60
MRRWAWAAVVVLLGPQLVLLGGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKP
Sbjct: 1 MRRWAWAAVVVLLGPQLVLLGGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKP 60
Query: 61 SQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRDKKPRDLFGPPGPPGAEVTAETLLHE 120
SQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRDKKPRDLFGPPGPPGAEVTAETLLHE
Sbjct: 61 SQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRDKKPRDLFGPPGPPGAEVTAETLLHE 120
Query: 121 FQELLKEATERRFSGLLDPLLPQGAGLRLVGEAFHCRLQGPRRVDKRTLVELHGFQAPAA 180
FQELLKEATERRFSGLLDPLLPQGAGLRLVGEAFHCRLQGPRRVDKRTLVELHGFQAPAA
Sbjct: 121 FQELLKEATERRFSGLLDPLLPQGAGLRLVGEAFHCRLQGPRRVDKRTLVELHGFQAPAA 180
Query: 181 QGAFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKARLRARDVVCVLICIESLC 240
QGAFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKARLRARDVVCVLICIESLC
Sbjct: 181 QGAFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKARLRARDVVCVLICIESLC 240
Query: 241 QRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGSGAVLTIQAGSSFSGLLL 300
QRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGSGAVLTIQAGSSFSGLLL
Sbjct: 241 QRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGSGAVLTIQAGSSFSGLLL 300
Query: 301 GT 302
GT
Sbjct: 301 GT 302
>gi|169164936 PREDICTED: family with sequence similarity 132, member
B [Homo sapiens]
Length = 367
Score = 172 bits (436), Expect = 3e-43
Identities = 122/318 (38%), Positives = 162/318 (50%), Gaps = 53/318 (16%)
Query: 35 PGQRADPPNATASASSRE-----GLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGAL-R 88
P R+ PP A A E GL +P+ A D W+ FVR+ D G +
Sbjct: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPT-AERAHSVDPRDAWMLFVRQSDKGVNGK 109
Query: 89 KRCGSRDKKPR-DLFGPPGPPGAE------VTAETLLHEFQELLKEATERR--------- 132
KR + KK + L GPPGPPG + + E LL EFQ LLK A +R
Sbjct: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCT 169
Query: 133 -----------------------------FSGLLDPLLPQGAGLRLVGEAFHCRLQGPRR 163
+ L PL P G V AF CRL+
Sbjct: 170 CGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAP-GPRAPRVEAAFLCRLRRDAL 228
Query: 164 VDKRTLVELHGFQAPAAQGAFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKAR 223
V++R L EL + P A+GAF RG GL+L SG++ APV+G + +A+LHV E +
Sbjct: 229 VERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGP 288
Query: 224 LRARDVVCVLICIESLCQRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGS 283
R RD + +LICI+S CQR+ LEA+ GLES+S +FT+ V G+L LQ GQ+ SVF+DN S
Sbjct: 289 PRPRDHLRLLICIQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNAS 348
Query: 284 GAVLTIQAGSSFSGLLLG 301
G LT+++GS FS +LLG
Sbjct: 349 GCSLTVRSGSHFSAVLLG 366
>gi|169163362 PREDICTED: hypothetical protein LOC151176 [Homo
sapiens]
Length = 367
Score = 172 bits (436), Expect = 3e-43
Identities = 122/318 (38%), Positives = 162/318 (50%), Gaps = 53/318 (16%)
Query: 35 PGQRADPPNATASASSRE-----GLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGAL-R 88
P R+ PP A A E GL +P+ A D W+ FVR+ D G +
Sbjct: 51 PFPRSHPPRAGGEAEPSEANRPAGLAVFQEPT-AERAHSVDPRDAWMLFVRQSDKGVNGK 109
Query: 89 KRCGSRDKKPR-DLFGPPGPPGAE------VTAETLLHEFQELLKEATERR--------- 132
KR + KK + L GPPGPPG + + E LL EFQ LLK A +R
Sbjct: 110 KRSRGKAKKLKFGLPGPPGPPGPQGPPGPIIPPEALLKEFQLLLKGAVRQRERAEPEPCT 169
Query: 133 -----------------------------FSGLLDPLLPQGAGLRLVGEAFHCRLQGPRR 163
+ L PL P G V AF CRL+
Sbjct: 170 CGPAGPVAASLAPVSATAGEDDDDVVGDVLALLAAPLAP-GPRAPRVEAAFLCRLRRDAL 228
Query: 164 VDKRTLVELHGFQAPAAQGAFLRGSGLSLASGRFTAPVSGIFQFSASLHVDHSELQGKAR 223
V++R L EL + P A+GAF RG GL+L SG++ APV+G + +A+LHV E +
Sbjct: 229 VERRALHELGVYYLPDAEGAFRRGPGLNLTSGQYRAPVAGFYALAATLHVALGEPPRRGP 288
Query: 224 LRARDVVCVLICIESLCQRHTCLEAVSGLESNSRVFTLQVQGLLQLQAGQYASVFVDNGS 283
R RD + +LICI+S CQR+ LEA+ GLES+S +FT+ V G+L LQ GQ+ SVF+DN S
Sbjct: 289 PRPRDHLRLLICIQSRCQRNASLEAIMGLESSSELFTISVNGVLYLQMGQWTSVFLDNAS 348
Query: 284 GAVLTIQAGSSFSGLLLG 301
G LT+++GS FS +LLG
Sbjct: 349 GCSLTVRSGSHFSAVLLG 366
>gi|221139764 PHD and ring finger domains 1 [Homo sapiens]
Length = 1648
Score = 37.0 bits (84), Expect = 0.021
Identities = 39/127 (30%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Query: 13 LGPQLVLLGGVGARREAQRTQQPGQ----RADPPNATASASSREGLPEAPKPSQA----- 63
L P+ + G R Q G R+ P TA A R LP AP QA
Sbjct: 558 LQPRALPSGSPAQGPSGNRPQSTGLSCQGRSRTPARTAGAPVRLDLPAAPGAVQARNLSN 617
Query: 64 -SGPEFSDAHMTWLNFVRR---PDDGALRKRCGSRDKKPRDLFGPPGPPGAEVTAETLLH 119
S P F +H W N + P A K SRD KP PGPP T +
Sbjct: 618 GSVPGFRQSHSPWFNGTNKHTLPLASAASK-ISSRDSKPPCRSVVPGPPLKPAPRRTDIS 676
Query: 120 EFQELLK 126
E + K
Sbjct: 677 ELPRIPK 683
>gi|89276751 alpha 1 type V collagen preproprotein [Homo sapiens]
Length = 1838
Score = 35.8 bits (81), Expect = 0.048
Identities = 29/89 (32%), Positives = 34/89 (38%), Gaps = 10/89 (11%)
Query: 21 GGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFVR 80
G GAR +T G R + A +G P PS GP D
Sbjct: 613 GSDGARGMPGQTGPKGDRGF--DGLAGLPGEKGHRGDPGPSGPPGPPGDDGE-------- 662
Query: 81 RPDDGALRKRCGSRDKKPRDLFGPPGPPG 109
R DDG + R + PR L GP GPPG
Sbjct: 663 RGDDGEVGPRGLPGEPGPRGLLGPKGPPG 691
>gi|62739183 C1q and tumor necrosis factor related protein 3 isoform
b [Homo sapiens]
Length = 319
Score = 35.0 bits (79), Expect = 0.081
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 9/92 (9%)
Query: 21 GGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFVR 80
G G+RRE R +R+ P T ++ L ++ +P + PE D + +
Sbjct: 48 GRSGSRREKVR-----ERSHPKTGTVDNNTSTDL-KSLRPDELPHPEVDDLAQITTFWGQ 101
Query: 81 RPDDGALR---KRCGSRDKKPRDLFGPPGPPG 109
P G L +C D R GPPGPPG
Sbjct: 102 SPQTGGLPPDCSKCCHGDYSFRGYQGPPGPPG 133
Score = 28.1 bits (61), Expect = 10.0
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 187 GSGLSLASGRFTAPVSGI--FQFSASLHVDHSEL 218
G+ + +GRF APVSG+ F FS H D E+
Sbjct: 218 GNFFDVMTGRFGAPVSGVYFFTFSMMKHEDVEEV 251
>gi|156071470 hyperpolarization activated cyclic nucleotide-gated
potassium channel 2 [Homo sapiens]
Length = 889
Score = 32.7 bits (73), Expect = 0.40
Identities = 31/96 (32%), Positives = 34/96 (35%), Gaps = 6/96 (6%)
Query: 21 GGVGARREAQ-RTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFV 79
GG G E+ T PG PP A P AP P P L
Sbjct: 5 GGGGRPGESPGATPAPGPPPPPPPAPPQQQPPPPPPPAPPPGPGPAPPQHPPRAEALP-P 63
Query: 80 RRPDDGALRKRCGSRDKKPRDLFGPPGPPGAEVTAE 115
D+G R R SRD G PG PGA TA+
Sbjct: 64 EAADEGGPRGRLRSRDSS----CGRPGTPGAASTAK 95
>gi|4505419 nucleolar protein 3 [Homo sapiens]
Length = 208
Score = 31.6 bits (70), Expect = 0.90
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 22 GVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDA 71
G G R + PG P A S ++ GLP A P +A GPE S+A
Sbjct: 97 GPGYRDRSYDPPCPGHWT--PEAPGSGTTCPGLPRASDPDEAGGPEGSEA 144
>gi|49472835 bridging integrator 2 [Homo sapiens]
Length = 565
Score = 31.6 bits (70), Expect = 0.90
Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 26 RREAQRTQQPGQRADPPNATASASSREG-LPEAPKPSQASGP 66
R QRT P R PP ATAS G +P +P S P
Sbjct: 404 RASIQRTSAPPSRPPPPRATASPRPSSGNIPSSPTASGGGSP 445
>gi|148536825 alpha 1 type IV collagen preproprotein [Homo sapiens]
Length = 1669
Score = 31.2 bits (69), Expect = 1.2
Identities = 29/100 (29%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
Query: 14 GPQLVLLGG--VGARREAQRTQQPGQRADP-PNATASASSREGLPEAPKPSQASGPEFSD 70
GP +++G +G + E PG R +P P + G P P P QA P F
Sbjct: 329 GPPGIVIGTGPLGEKGERGYPGTPGPRGEPGPKGFPGLPGQPGPPGLPVPGQAGAPGFPG 388
Query: 71 AHMTWLNFVRRPDDGALRKRCGSRDKKPRDLFGPPGPPGA 110
R + G R G+ P G PGPPG+
Sbjct: 389 ---------ERGEKGD-RGFPGTSLPGPSGRDGLPGPPGS 418
Score = 29.3 bits (64), Expect = 4.5
Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 2/76 (2%)
Query: 34 QPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGALRKRCGS 93
+ GQ+ +P +G P P P G + F P L R G
Sbjct: 259 EKGQKGEPGFQGMPGVGEKGEPGKPGPRGKPGKDGDKGEKGSPGFPGEPGYPGLIGRQGP 318
Query: 94 RDKKPRDLFGPPGPPG 109
+ +K GPPGPPG
Sbjct: 319 QGEKGEA--GPPGPPG 332
>gi|239757813 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 31.2 bits (69), Expect = 1.2
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 20 LGGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFV 79
+G V R AQR ++ +R P A +A + G A P G A WL +
Sbjct: 16 MGRVRNRATAQRRRR--KRPGDPPAACAAIAVMGASRAQCPRVQVGVGSHAAAKRWLGKL 73
Query: 80 RRPDDGALRKRCGSRDKKP-RDLFGPPGP 107
RR + GSRD P L PP P
Sbjct: 74 RRKRRWRRAREAGSRDPLPSAPLPDPPAP 102
>gi|89060771 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 31.2 bits (69), Expect = 1.2
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 20 LGGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFV 79
+G V R AQR ++ +R P A +A + G A P G A WL +
Sbjct: 16 MGRVRNRATAQRRRR--KRPGDPPAACAAIAVMGASRAQCPRVQVGVGSHAAAKRWLGKL 73
Query: 80 RRPDDGALRKRCGSRDKKP-RDLFGPPGP 107
RR + GSRD P L PP P
Sbjct: 74 RRKRRWRRAREAGSRDPLPSAPLPDPPAP 102
>gi|51477177 PREDICTED: hypothetical protein [Homo sapiens]
Length = 287
Score = 31.2 bits (69), Expect = 1.2
Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 3/89 (3%)
Query: 20 LGGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFV 79
+G V R AQR ++ +R P A +A + G A P G A WL +
Sbjct: 16 MGRVRNRATAQRRRR--KRPGDPPAACAAIAVMGASRAQCPRVQVGVGSHAAAKRWLGKL 73
Query: 80 RRPDDGALRKRCGSRDKKP-RDLFGPPGP 107
RR + GSRD P L PP P
Sbjct: 74 RRKRRWRRAREAGSRDPLPSAPLPDPPAP 102
>gi|4502961 alpha 1 type VII collagen precursor [Homo sapiens]
Length = 2944
Score = 31.2 bits (69), Expect = 1.2
Identities = 25/91 (27%), Positives = 34/91 (37%), Gaps = 2/91 (2%)
Query: 19 LLGGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNF 78
L G G + + +PG+ P + GLP P PS GP+ S +
Sbjct: 2193 LAGPAGPQGPSGLKGEPGETGPPGRGLTGPTGAVGLPGPPGPSGLVGPQGSPGLPGQVGE 2252
Query: 79 VRRPDDGALRKRCGSRDKKPRDLFGPPGPPG 109
+P GA + S R G PG PG
Sbjct: 2253 TGKP--GAPGRDGASGKDGDRGSPGVPGSPG 2281
Score = 30.8 bits (68), Expect = 1.5
Identities = 24/88 (27%), Positives = 35/88 (39%), Gaps = 20/88 (22%)
Query: 36 GQRADP-PNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSR 94
G+R P P+ A + G+P P + G RP + R G R
Sbjct: 2022 GERGPPGPSGLAGEPGKPGIPGLPGRAGGVGE------------AGRPGERGERGEKGER 2069
Query: 95 DKKPRD-------LFGPPGPPGAEVTAE 115
++ RD GPPGPPG +V+ +
Sbjct: 2070 GEQGRDGPPGLPGTPGPPGPPGPKVSVD 2097
>gi|22218341 matrix metalloproteinase 21 preproprotein [Homo
sapiens]
Length = 569
Score = 31.2 bits (69), Expect = 1.2
Identities = 23/69 (33%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 50 SREGLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGAL---------RKRCGSRDKKPRD 100
S EG PE PK G ++A + P G L R RCG D +P
Sbjct: 72 SPEGPPETPK-----GAALAEAVRRFQRANALPASGELDAATLAAMNRPRCGVPDMRPPP 126
Query: 101 LFGPPGPPG 109
PP PPG
Sbjct: 127 PSAPPSPPG 135
>gi|22027603 alpha 1 type XIII collagen isoform 16 [Homo sapiens]
Length = 660
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 55 PEAPKPSQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRDKKPRDLFGPPGPPG 109
P+ K + E+ + LN VR +++R ++ + GPPGPPG
Sbjct: 165 PQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPG 219
>gi|22027593 alpha 1 type XIII collagen isoform 11 [Homo sapiens]
Length = 686
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 55 PEAPKPSQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRDKKPRDLFGPPGPPG 109
P+ K + E+ + LN VR +++R ++ + GPPGPPG
Sbjct: 203 PQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPG 257
>gi|22027574 alpha 1 type XIII collagen isoform 4 [Homo sapiens]
Length = 698
Score = 31.2 bits (69), Expect = 1.2
Identities = 15/55 (27%), Positives = 25/55 (45%)
Query: 55 PEAPKPSQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRDKKPRDLFGPPGPPG 109
P+ K + E+ + LN VR +++R ++ + GPPGPPG
Sbjct: 203 PQGQKGEKGQCGEYPHRLLPLLNSVRLAPPPVIKRRTFQGEQSQASIQGPPGPPG 257
>gi|206597445 alpha 1 type XVIII collagen isoform 3 precursor [Homo
sapiens]
Length = 1751
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 36 GQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRD 95
G + DP +G P P GP F +T+++ G L G
Sbjct: 850 GDKGDPGVGERGPPGPQGPPGPP------GPSFRHDKLTFIDMEGSGFGGDLEALRG--- 900
Query: 96 KKPRDLFGPPGPPG 109
PR GPPGPPG
Sbjct: 901 --PRGFPGPPGPPG 912
Score = 28.5 bits (62), Expect = 7.6
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 21 GGVGARREAQRTQQPGQRADP-----PNATASASSREGLPEAPKPSQASGPEFSDAHMTW 75
G +G++ E G++ +P P+ A +++G P GP +
Sbjct: 1160 GNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGE 1219
Query: 76 LNFVRRPDDGALRKRCGSRDKKP--------RDLFGPPGPPG 109
+ F RP + G + + R + GPPGPPG
Sbjct: 1220 IGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPG 1261
>gi|110611233 alpha 1 type XVIII collagen isoform 2 precursor [Homo
sapiens]
Length = 1336
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 36 GQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRD 95
G + DP +G P P GP F +T+++ G L G
Sbjct: 435 GDKGDPGVGERGPPGPQGPPGPP------GPSFRHDKLTFIDMEGSGFGGDLEALRG--- 485
Query: 96 KKPRDLFGPPGPPG 109
PR GPPGPPG
Sbjct: 486 --PRGFPGPPGPPG 497
Score = 28.5 bits (62), Expect = 7.6
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 21 GGVGARREAQRTQQPGQRADP-----PNATASASSREGLPEAPKPSQASGPEFSDAHMTW 75
G +G++ E G++ +P P+ A +++G P GP +
Sbjct: 745 GNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGE 804
Query: 76 LNFVRRPDDGALRKRCGSRDKKP--------RDLFGPPGPPG 109
+ F RP + G + + R + GPPGPPG
Sbjct: 805 IGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPG 846
>gi|110611235 alpha 1 type XVIII collagen isoform 1 precursor [Homo
sapiens]
Length = 1516
Score = 30.8 bits (68), Expect = 1.5
Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 11/74 (14%)
Query: 36 GQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLNFVRRPDDGALRKRCGSRD 95
G + DP +G P P GP F +T+++ G L G
Sbjct: 615 GDKGDPGVGERGPPGPQGPPGPP------GPSFRHDKLTFIDMEGSGFGGDLEALRG--- 665
Query: 96 KKPRDLFGPPGPPG 109
PR GPPGPPG
Sbjct: 666 --PRGFPGPPGPPG 677
Score = 28.5 bits (62), Expect = 7.6
Identities = 23/102 (22%), Positives = 39/102 (38%), Gaps = 13/102 (12%)
Query: 21 GGVGARREAQRTQQPGQRADP-----PNATASASSREGLPEAPKPSQASGPEFSDAHMTW 75
G +G++ E G++ +P P+ A +++G P GP +
Sbjct: 925 GNLGSKGERGSPGPKGEKGEPGSIFSPDGGALGPAQKGAKGEPGFRGPPGPYGRPGYKGE 984
Query: 76 LNFVRRPDDGALRKRCGSRDKKP--------RDLFGPPGPPG 109
+ F RP + G + + R + GPPGPPG
Sbjct: 985 IGFPGRPGRPGMNGLKGEKGEPGDASLGFGMRGMPGPPGPPG 1026
>gi|134142824 forkhead box D2 [Homo sapiens]
Length = 495
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/51 (33%), Positives = 21/51 (41%)
Query: 15 PQLVLLGGVGARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASG 65
P A Q + PG+ A PP +AS G AP P+ ASG
Sbjct: 292 PHAFAFAAAAAAAPCQLSVPPGRAAAPPPGPPTASVFAGAGSAPAPAPASG 342
>gi|50511941 EMI domain containing 1 [Homo sapiens]
Length = 443
Score = 30.8 bits (68), Expect = 1.5
Identities = 26/81 (32%), Positives = 34/81 (41%), Gaps = 16/81 (19%)
Query: 103 GPPGPPGAEVTAETLLHEFQELLKEATER-----RFSGLLDPLLPQGAGL---------- 147
GP G PG + LH+ +E LK ER GL +P L GAG
Sbjct: 362 GPKGDPGEKSHWGEGLHQLREALKILAERVLILETMIGLYEPELGSGAGPAGTGTPSLLR 421
Query: 148 -RLVGEAFHCRLQGPRRVDKR 167
+ G A + R+ PR D+R
Sbjct: 422 GKRGGHATNYRIVAPRSRDER 442
>gi|111118972 collagen, type XI, alpha 2 isoform 2 preproprotein
[Homo sapiens]
Length = 1650
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 81 RPDDGALRKRCGSRDKKPRDLFGPPGPPG 109
R DDG + R + PR L GP GPPG
Sbjct: 505 RGDDGEIGPRGLPGESGPRGLLGPKGPPG 533
>gi|111118968 collagen, type XI, alpha 2 isoform 3 preproprotein
[Homo sapiens]
Length = 1629
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 81 RPDDGALRKRCGSRDKKPRDLFGPPGPPG 109
R DDG + R + PR L GP GPPG
Sbjct: 484 RGDDGEIGPRGLPGESGPRGLLGPKGPPG 512
>gi|111118970 collagen, type XI, alpha 2 isoform 1 preproprotein
[Homo sapiens]
Length = 1736
Score = 30.4 bits (67), Expect = 2.0
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 81 RPDDGALRKRCGSRDKKPRDLFGPPGPPG 109
R DDG + R + PR L GP GPPG
Sbjct: 591 RGDDGEIGPRGLPGESGPRGLLGPKGPPG 619
>gi|195972857 Rho/Rac guanine nucleotide exchange factor 18 isoform
b [Homo sapiens]
Length = 1173
Score = 30.0 bits (66), Expect = 2.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 84 DGALRKRCGSRDKKPRDLFGPPGPPGAEVT 113
+G+ +K+ S D +PRD GPP P +++
Sbjct: 737 NGSFKKKVSSTDPRPRDWRGPPNSPDLKLS 766
>gi|41327769 Rho/Rac guanine nucleotide exchange factor 18 isoform a
[Homo sapiens]
Length = 1015
Score = 30.0 bits (66), Expect = 2.6
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 84 DGALRKRCGSRDKKPRDLFGPPGPPGAEVT 113
+G+ +K+ S D +PRD GPP P +++
Sbjct: 579 NGSFKKKVSSTDPRPRDWRGPPNSPDLKLS 608
>gi|239755068 PREDICTED: hypothetical protein [Homo sapiens]
Length = 205
Score = 30.0 bits (66), Expect = 2.6
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 24 GARREAQRTQQPGQRADPPNATASASSREGLPEAPKPSQASGPEFSDAHMTWLN 77
G RR A R RADP S SSREG + KPS+A H+ L+
Sbjct: 133 GQRRRADRES----RADPQVTGTSDSSREGDTDHGKPSEARDAGLPGFHVRSLS 182
>gi|169167062 PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
Length = 1826
Score = 30.0 bits (66), Expect = 2.6
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 29/106 (27%)
Query: 24 GARREAQRTQQPG-QRADPPNATASA-------SSREGLPEAPKPSQASGPEFSDAHMTW 75
G+ + +PG R PPN++A+ S+R +P + K SQ SG + W
Sbjct: 1510 GSSAAGELLSRPGASREGPPNSSAATLCSLPPLSARSQVPSSSKGSQVSGT----SRPAW 1565
Query: 76 LNFVRRPDDGALRKRCGSRDKKPRD-LFGPPGPPGAEVTAETLLHE 120
+PD+ PR+ + PPGP E T+ H+
Sbjct: 1566 RT---KPDN-------------PRETVAAPPGPQSPEHPPTTIYHQ 1595
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,056,355
Number of Sequences: 37866
Number of extensions: 672189
Number of successful extensions: 3793
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 83
Number of HSP's that attempted gapping in prelim test: 3306
Number of HSP's gapped (non-prelim): 567
length of query: 302
length of database: 18,247,518
effective HSP length: 102
effective length of query: 200
effective length of database: 14,385,186
effective search space: 2877037200
effective search space used: 2877037200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.