Guide to the Human Genome
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Name: ARHGEF18 Sequence: fasta or formatted (1173aa) NCBI GI: 195972857
Description:

Rho/Rac guanine nucleotide exchange factor 18 isoform b

Referenced in:

Rho and Rac

Other entries for this name:
alt prot [1015aa] Rho/Rac guanine nucleotide exchange factor 18 isoform a
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.8         91           2
 C cysteine            0.7          8           1
 D aspartate           4.5         53           2
 E glutamate           9.5        111           3
 F phenylalanine       2.9         34           2
 G glycine             6.6         77           2
 H histidine           1.7         20           2
 I isoleucine          3.6         42           2
 K lysine              5.7         67           3
 L leucine            11.1        130           4
 M methionine          1.6         19           1
 N asparagine          2.9         34           1
 P proline             6.9         81           3
 Q glutamine           6.8         80           3
 R arginine            7.9         93           2
 S serine              9.0        106           3
 T threonine           4.3         50           2
 V valine              4.3         50           2
 W tryptophan          0.7          8           1
 Y tyrosine            1.6         19           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   Rho/Rac guanine nucleotide exchange factor 18 isofo... 
ARHGEF18              0.862   Rho/Rac guanine nucleotide exchange factor 18 isofor...
RGNEF                 0.269   Rho-guanine nucleotide exchange factor 
AKAP13                0.250   A-kinase anchor protein 13 isoform 1 
AKAP13                0.250   A-kinase anchor protein 13 isoform 3 
AKAP13                0.250   A-kinase anchor protein 13 isoform 2 
ARHGEF2               0.194   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF2               0.194   Rho/Rac guanine nucleotide exchange factor 2 isoofor...
ARHGEF2               0.191   Rho/Rac guanine nucleotide exchange factor 2 isofor...
ARHGEF11              0.072   Rho guanine nucleotide exchange factor (GEF) 11 isof...
ARHGEF11              0.072   Rho guanine nucleotide exchange factor (GEF) 11 isofo...
ARHGEF12              0.069   Rho guanine nucleotide exchange factor (GEF) 12 [Homo...
ARHGEF1               0.068   Rho guanine nucleotide exchange factor 1 isoform 1 [...
ARHGEF1               0.068   Rho guanine nucleotide exchange factor 1 isoform 3 [...
ARHGEF1               0.068   Rho guanine nucleotide exchange factor 1 isoform 2 [...
ITSN2                 0.029   intersectin 2 isoform 3 
ITSN2                 0.029   intersectin 2 isoform 1 
ARHGEF3               0.027   Rho guanine nucleotide exchange factor 3 isoform 2 ...
ARHGEF3               0.027   Rho guanine nucleotide exchange factor 3 isoform 1 ...
ARHGEF3               0.027   Rho guanine nucleotide exchange factor 3 isoform 3 [H...
ITSN1                 0.026   intersectin 1 isoform ITSN-l 
PLEKHG5               0.021   pleckstrin homology domain containing family G membe...
PLEKHG5               0.021   pleckstrin homology domain containing family G memb...
PLEKHG5               0.021   pleckstrin homology domain containing family G memb...
PLEKHG5               0.021   pleckstrin homology domain containing family G memb...
PLEKHG5               0.021   pleckstrin homology domain containing family G memb...
MAP4K4                0.020   mitogen-activated protein kinase kinase kinase kinas...
MED15                 0.019   mediator complex subunit 15 isoform b 
FGD4                  0.019   FYVE, RhoGEF and PH domain containing 4 
NET1                  0.019   neuroepithelial cell transforming gene 1 isoform 1 ...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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