PRPF38A 23968

Name: PRPF38A	Sequence: fasta or formatted (312aa)		NCBI GI: 24762236
Description: PRP38 pre-mRNA processing factor 38 (yeast) domain containing A		Referenced in: Capping and Splicing
Composition: Amino acid Percentage Count Longest homopolymer A alanine 2.6 8 1 C cysteine 1.3 4 1 D aspartate 5.4 17 2 E glutamate 10.6 33 6 F phenylalanine 2.2 7 1 G glycine 3.5 11 2 H histidine 4.5 14 2 I isoleucine 4.5 14 2 K lysine 7.7 24 2 L leucine 7.7 24 2 M methionine 2.2 7 1 N asparagine 2.6 8 1 P proline 5.8 18 1 Q glutamine 1.9 6 1 R arginine 15.7 49 3 S serine 9.9 31 2 T threonine 2.9 9 1 V valine 4.5 14 2 W tryptophan 0.3 1 1 Y tyrosine 4.2 13 1			Comparative genomics: Search single species RefSeq proteins at NCBI H. sapiens M. musculus D. rerio C. intestinalis S. purpuratus D. melanogaster C. elegans A. thaliana S. cerevisiae E. coli W3110 A. pernix K1 Search summary Figure data Additional searches of RefSeq proteins at NCBI All Eukaryotes Bacteria Archaea Viruses Primates Mammals Vertebrates
Related human proteins: Protein Relative score Description Self-match 1.000 PRP38 pre-mRNA processing factor 38 (yeast) domain c... PRPF38B 0.102 PRP38 pre-mRNA processing factor 38 (yeast) domain ... CROP 0.093 cisplatin resistance-associated overexpressed protei... CROP 0.093 cisplatin resistance-associated overexpressed protei... SRRM2 0.074 splicing coactivator subunit SRm300 LUC7L2 0.074 LUC7-like 2 SON 0.070 SON DNA-binding protein isoform F SON 0.070 SON DNA-binding protein isoform B RSRC2 0.069 arginine/serine-rich coiled-coil 2 isoform a RSRC2 0.069 arginine/serine-rich coiled-coil 2 isoform b SFRS11 0.069 splicing factor, arginine/serine-rich 11 DDX46 0.067 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 SFRS6 0.067 arginine/serine-rich splicing factor 6 SRRM1 0.067 serine/arginine repetitive matrix 1 LOC100170229 0.066 hypothetical protein LOC100170229 LUC7L 0.064 LUC7-like isoform b ZRANB2 0.064 zinc finger protein 265 isoform 1 ZRANB2 0.064 zinc finger protein 265 isoform 2 SNRNP27 0.062 small nuclear ribonucleoprotein 27kDa (U4/U6.U5) [Ho... PRPF4B 0.062 serine/threonine-protein kinase PRP4K LUC7L 0.061 LUC7-like isoform a C2orf16 0.061 hypothetical protein LOC84226 SFRS12 0.061 splicing factor, arginine/serine-rich 12 isoform a ... SFRS12 0.061 splicing factor, arginine/serine-rich 12 isoform b [... DDX23 0.061 DEAD (Asp-Glu-Ala-Asp) box polypeptide 23 RBM39 0.059 RNA binding motif protein 39 isoform b RBM39 0.059 RNA binding motif protein 39 isoform a LOC100133599 0.059 PREDICTED: hypothetical protein SR140 0.059 U2-associated SR140 protein SFRS8 0.057 splicing factor, arginine/serine-rich 8 Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.