Guide to the Human Genome
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Name: LRCH1 Sequence: fasta or formatted (728aa) NCBI GI: 33859670
Description:

leucine-rich repeats and calponin homology (CH) domain containing 1

Referenced in:

Leucine-rich Repeat Family

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         43           2
 C cysteine            2.5         18           1
 D aspartate           5.1         37           1
 E glutamate           8.1         59           3
 F phenylalanine       2.6         19           1
 G glycine             5.8         42           6
 H histidine           4.3         31           7
 I isoleucine          4.9         36           2
 K lysine              4.3         31           2
 L leucine            13.3         97           3
 M methionine          2.3         17           1
 N asparagine          4.8         35           2
 P proline             6.5         47           3
 Q glutamine           5.1         37           2
 R arginine            5.2         38           2
 S serine              8.0         58           3
 T threonine           3.7         27           2
 V valine              6.0         44           2
 W tryptophan          0.3          2           1
 Y tyrosine            1.4         10           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   leucine-rich repeats and calponin homology (CH) doma... 
LRCH2                 0.363   leucine-rich repeats and calponin homology (CH) dom...
LRCH4                 0.282   leucine-rich repeats and calponin homology (CH) doma...
LRCH3                 0.266   leucine-rich repeats and calponin homology (CH) doma...
RSU1                  0.054   ras suppressor protein 1 isoform 1 
MFHAS1                0.051   malignant fibrous histiocytoma amplified sequence 1...
LRRC7                 0.051   leucine rich repeat containing 7 
LOC401387             0.049   leucine-rich repeat and death domain-containing pro...
RSU1                  0.049   ras suppressor protein 1 isoform 2 
LRRC40                0.048   leucine rich repeat containing 40 
LRRC69                0.048   leucine rich repeat containing 69 
SHOC2                 0.047   soc-2 suppressor of clear homolog 
LRDD                  0.047   leucine rich repeat and death domain containing prot...
LRDD                  0.047   leucine rich repeat and death domain containing prot...
SCRIB                 0.045   scribble isoform b 
SCRIB                 0.045   scribble isoform a 
LRRC28                0.045   leucine rich repeat containing 28 
ERBB2IP               0.044   ERBB2 interacting protein isoform 7 
ERBB2IP               0.044   ERBB2 interacting protein isoform 2 
LRRC1                 0.043   leucine rich repeat containing 1 
LRSAM1                0.042   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.042   leucine rich repeat and sterile alpha motif containi...
LRSAM1                0.042   leucine rich repeat and sterile alpha motif containi...
LRDD                  0.042   leucine rich repeat and death domain containing prot...
LRRIQ4                0.041   leucine-rich repeats and IQ motif containing 4 [Hom...
LRRC39                0.040   leucine rich repeat containing 39 
FLII                  0.040   flightless I homolog 
LRRC8D                0.040   leucine rich repeat containing 8 family, member D [...
LRRC8D                0.040   leucine rich repeat containing 8 family, member D [H...
LRRC30                0.039   leucine rich repeat containing 30 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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